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README.md
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@@ -4,6 +4,8 @@ configs:
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- config_name: study_meta
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data_files: study_meta.csv
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default: true
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- config_name: example_meta
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data_files: example_dataset/GSE194378_meta_sample.csv
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- config_name: example_bulk_gene_expr
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***Sep 9, 2025*** We corrected technical issues in GSE194378_gene_expr.csv, GSE199750_gene_expr.csv, and GSE276544_gene_expr.csv. These files have been re-uploaded, and users are advised to re-run analyses if relying on them.
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# Dataset Description:
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- This repo contains 66 studies (59 bulk and 7 single cell studies), comprising 3178 subjects and 14,136 observations along with 2,557,942 single cells.
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- We provide preprocessed and normalized gene expression data, raw gene expression data, metadata and antibody data.
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- config_name: study_meta
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data_files: study_meta.csv
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default: true
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- config_name: Meta_variable_description
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data_files: Meta_variable_description.csv
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- config_name: example_meta
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data_files: example_dataset/GSE194378_meta_sample.csv
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- config_name: example_bulk_gene_expr
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***Sep 9, 2025*** We corrected technical issues in GSE194378_gene_expr.csv, GSE199750_gene_expr.csv, and GSE276544_gene_expr.csv. These files have been re-uploaded, and users are advised to re-run analyses if relying on them.
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***Oct 13, 2025*** Data repo V2 release
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1. GSE169159_gene_expr.csv: updated to incorporate the authors’ latest data revision.
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2. GSE230494_antibody.csv: added antibody measurements and updated the corresponding metadata.
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3. study_meta: updated to include the number of genes and timepoint information; added Meta_variable_description.csv.
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# Dataset Description:
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- This repo contains 66 studies (59 bulk and 7 single cell studies), comprising 3178 subjects and 14,136 observations along with 2,557,942 single cells.
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- We provide preprocessed and normalized gene expression data, raw gene expression data, metadata and antibody data.
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