Paper Reporting Summary
This directory is the paper-facing result snapshot generated from existing Seq2State artifacts.
Headline Comparison
Only full-benchmark trainable rows are included here, so AUPRCs are directly comparable within each scoreboard.
| result_type | comparison_scope | source_name | model_or_feature | scoreboard | evaluation_universe | auprc | ci_low | ci_high | auroc | mrr | recall_at_1 | terms_ok_for_training |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | field_compatible_e2g | full_benchmark_138k | 0.6515 | 0.5661 | 0.6866 | 0.9790 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | field_compatible_e2g | full_benchmark_138k | 0.6440 | 0.5547 | 0.6778 | 0.9750 | 0.0613 | 0.0606 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | field_compatible_e2g | full_benchmark_138k | 0.6379 | 0.5414 | 0.6664 | 0.9741 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | field_compatible_e2g | full_benchmark_138k | 0.6349 | 0.5590 | 0.6736 | 0.9768 | 0.0613 | 0.0605 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6286 | 0.5341 | 0.6553 | 0.9747 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | field_compatible_e2g | full_benchmark_138k | 0.6250 | 0.5470 | 0.6608 | 0.9761 | 0.0611 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | field_compatible_e2g | full_benchmark_138k | 0.6163 | 0.5266 | 0.6481 | 0.9747 | 0.0611 | 0.0603 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6125 | 0.5291 | 0.6570 | 0.9743 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6084 | 0.5184 | 0.6431 | 0.9761 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | field_compatible_e2g | full_benchmark_138k | 0.5951 | 0.5036 | 0.6294 | 0.9768 | 0.0613 | 0.0605 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.5730 | 0.4814 | 0.6018 | 0.9715 | 0.0609 | 0.0598 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.4898 | 0.4202 | 0.5399 | 0.9636 | 0.0604 | 0.0592 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | field_compatible_e2g | full_benchmark_138k | 0.3860 | 0.3147 | 0.4282 | 0.9501 | 0.0598 | 0.0578 | True |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | high_confidence | full_benchmark_138k | 0.6286 | 0.5443 | 0.6640 | 0.9742 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | high_confidence | full_benchmark_138k | 0.6215 | 0.5333 | 0.6598 | 0.9705 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | high_confidence | full_benchmark_138k | 0.6163 | 0.5211 | 0.6444 | 0.9702 | 0.0591 | 0.0579 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | high_confidence | full_benchmark_138k | 0.6121 | 0.5295 | 0.6500 | 0.9725 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | high_confidence | full_benchmark_138k | 0.6042 | 0.5052 | 0.6352 | 0.9694 | 0.0591 | 0.0577 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | high_confidence | full_benchmark_138k | 0.6022 | 0.5200 | 0.6393 | 0.9713 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5936 | 0.5131 | 0.6351 | 0.9704 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | high_confidence | full_benchmark_138k | 0.5931 | 0.5050 | 0.6267 | 0.9701 | 0.0591 | 0.0581 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | high_confidence | full_benchmark_138k | 0.5846 | 0.4925 | 0.6212 | 0.9699 | 0.0591 | 0.0579 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | high_confidence | full_benchmark_138k | 0.5750 | 0.4818 | 0.6083 | 0.9712 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5552 | 0.4622 | 0.5897 | 0.9686 | 0.0589 | 0.0575 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | high_confidence | full_benchmark_138k | 0.4762 | 0.4075 | 0.5253 | 0.9622 | 0.0587 | 0.0573 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | high_confidence | full_benchmark_138k | 0.3672 | 0.3054 | 0.4129 | 0.9465 | 0.0580 | 0.0559 | True |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | strict_all | full_benchmark_138k | 0.2965 | 0.2543 | 0.3232 | 0.8816 | 0.0886 | 0.0806 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | strict_all | full_benchmark_138k | 0.2900 | 0.2416 | 0.3172 | 0.8831 | 0.0886 | 0.0805 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | strict_all | full_benchmark_138k | 0.2879 | 0.2426 | 0.3165 | 0.8790 | 0.0886 | 0.0809 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | strict_all | full_benchmark_138k | 0.2849 | 0.2430 | 0.3101 | 0.8817 | 0.0887 | 0.0803 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | strict_all | full_benchmark_138k | 0.2817 | 0.2366 | 0.3088 | 0.8660 | 0.0879 | 0.0799 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | strict_all | full_benchmark_138k | 0.2784 | 0.2366 | 0.3047 | 0.8776 | 0.0884 | 0.0804 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | strict_all | full_benchmark_138k | 0.2784 | 0.2338 | 0.3000 | 0.8830 | 0.0885 | 0.0806 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | strict_all | full_benchmark_138k | 0.2734 | 0.2339 | 0.3019 | 0.8649 | 0.0869 | 0.0783 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | strict_all | full_benchmark_138k | 0.2730 | 0.2306 | 0.2975 | 0.8672 | 0.0878 | 0.0799 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | strict_all | full_benchmark_138k | 0.2601 | 0.2180 | 0.2824 | 0.8647 | 0.0884 | 0.0808 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | strict_all | full_benchmark_138k | 0.2594 | 0.2248 | 0.2909 | 0.8682 | 0.0873 | 0.0790 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | strict_all | full_benchmark_138k | 0.2256 | 0.1924 | 0.2521 | 0.8601 | 0.0875 | 0.0796 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | strict_all | full_benchmark_138k | 0.1842 | 0.1527 | 0.2024 | 0.8511 | 0.0866 | 0.0781 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | very_high_confidence | full_benchmark_138k | 0.7136 | 0.5814 | 0.7727 | 0.9842 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | very_high_confidence | full_benchmark_138k | 0.7117 | 0.5867 | 0.7695 | 0.9803 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6984 | 0.5645 | 0.7625 | 0.9831 | 0.0258 | 0.0255 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | very_high_confidence | full_benchmark_138k | 0.6924 | 0.5508 | 0.7464 | 0.9844 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | very_high_confidence | full_benchmark_138k | 0.6751 | 0.5392 | 0.7317 | 0.9804 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | very_high_confidence | full_benchmark_138k | 0.6741 | 0.5416 | 0.7376 | 0.9773 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6708 | 0.5406 | 0.7307 | 0.9816 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | very_high_confidence | full_benchmark_138k | 0.6614 | 0.5348 | 0.7251 | 0.9776 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | very_high_confidence | full_benchmark_138k | 0.6440 | 0.5037 | 0.7074 | 0.9724 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | very_high_confidence | full_benchmark_138k | 0.6179 | 0.5028 | 0.7055 | 0.9727 | 0.0254 | 0.0249 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6096 | 0.4687 | 0.6710 | 0.9816 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.5192 | 0.3782 | 0.5887 | 0.9774 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | very_high_confidence | full_benchmark_138k | 0.3723 | 0.2717 | 0.4553 | 0.9607 | 0.0252 | 0.0246 | True |
Unmatched Oracle-Panel Context
WARNING: The table below intentionally mixes evaluation universes for context. Trainable rows are scored on the full 138k-pair benchmark (low prevalence) while oracle rows are scored on positive-region panels (high prevalence), so AUPRCs must not be interpreted as a leaderboard. For the prevalence-matched, apples-to-apples comparison see
paper_matched_panel_comparison.csv/.mdandpaper_matched_panel_paired_diff.csvproduced byscripts/build_matched_panel_comparison.py.
| result_type | comparison_scope | source_name | model_or_feature | scoreboard | evaluation_universe | auprc | ci_low | ci_high | auroc | mrr | recall_at_1 | terms_ok_for_training |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | field_compatible_e2g | oracle_panel_all_positive | 0.8282 | 0.7850 | 0.8599 | 0.9358 | 0.4789 | 0.4608 | False |
| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | field_compatible_e2g | oracle_panel_top250 | 0.8724 | 0.8281 | 0.9104 | 0.9405 | 0.6440 | 0.6198 | False |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | field_compatible_e2g | full_benchmark_138k | 0.6515 | 0.5661 | 0.6866 | 0.9790 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | field_compatible_e2g | full_benchmark_138k | 0.6440 | 0.5547 | 0.6778 | 0.9750 | 0.0613 | 0.0606 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | field_compatible_e2g | full_benchmark_138k | 0.6379 | 0.5414 | 0.6664 | 0.9741 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | field_compatible_e2g | full_benchmark_138k | 0.6349 | 0.5590 | 0.6736 | 0.9768 | 0.0613 | 0.0605 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6286 | 0.5341 | 0.6553 | 0.9747 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | field_compatible_e2g | full_benchmark_138k | 0.6250 | 0.5470 | 0.6608 | 0.9761 | 0.0611 | 0.0603 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | field_compatible_e2g | full_benchmark_138k | 0.6163 | 0.5266 | 0.6481 | 0.9747 | 0.0611 | 0.0603 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6125 | 0.5291 | 0.6570 | 0.9743 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6084 | 0.5184 | 0.6431 | 0.9761 | 0.0612 | 0.0603 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | field_compatible_e2g | full_benchmark_138k | 0.5951 | 0.5036 | 0.6294 | 0.9768 | 0.0613 | 0.0605 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.5730 | 0.4814 | 0.6018 | 0.9715 | 0.0609 | 0.0598 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.4898 | 0.4202 | 0.5399 | 0.9636 | 0.0604 | 0.0592 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | field_compatible_e2g | full_benchmark_138k | 0.3860 | 0.3147 | 0.4282 | 0.9501 | 0.0598 | 0.0578 | True |
| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | high_confidence | oracle_panel_all_positive | 0.8064 | 0.7629 | 0.8365 | 0.9201 | 0.4821 | 0.4602 | False |
| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | high_confidence | oracle_panel_top250 | 0.8443 | 0.7997 | 0.8778 | 0.9156 | 0.6654 | 0.6322 | False |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | high_confidence | full_benchmark_138k | 0.6286 | 0.5443 | 0.6640 | 0.9742 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | high_confidence | full_benchmark_138k | 0.6215 | 0.5333 | 0.6598 | 0.9705 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | high_confidence | full_benchmark_138k | 0.6163 | 0.5211 | 0.6444 | 0.9702 | 0.0591 | 0.0579 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | high_confidence | full_benchmark_138k | 0.6121 | 0.5295 | 0.6500 | 0.9725 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | high_confidence | full_benchmark_138k | 0.6042 | 0.5052 | 0.6352 | 0.9694 | 0.0591 | 0.0577 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | high_confidence | full_benchmark_138k | 0.6022 | 0.5200 | 0.6393 | 0.9713 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5936 | 0.5131 | 0.6351 | 0.9704 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | high_confidence | full_benchmark_138k | 0.5931 | 0.5050 | 0.6267 | 0.9701 | 0.0591 | 0.0581 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | high_confidence | full_benchmark_138k | 0.5846 | 0.4925 | 0.6212 | 0.9699 | 0.0591 | 0.0579 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | high_confidence | full_benchmark_138k | 0.5750 | 0.4818 | 0.6083 | 0.9712 | 0.0592 | 0.0581 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5552 | 0.4622 | 0.5897 | 0.9686 | 0.0589 | 0.0575 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | high_confidence | full_benchmark_138k | 0.4762 | 0.4075 | 0.5253 | 0.9622 | 0.0587 | 0.0573 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | high_confidence | full_benchmark_138k | 0.3672 | 0.3054 | 0.4129 | 0.9465 | 0.0580 | 0.0559 | True |
| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | strict_all | oracle_panel_all_positive | 0.5952 | 0.5534 | 0.6235 | 0.8268 | 0.7764 | 0.6852 | False |
| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | strict_all | oracle_panel_top250 | 0.6438 | 0.5917 | 0.6878 | 0.8155 | 0.8155 | 0.7366 | False |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | strict_all | full_benchmark_138k | 0.2965 | 0.2543 | 0.3232 | 0.8816 | 0.0886 | 0.0806 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | strict_all | full_benchmark_138k | 0.2900 | 0.2416 | 0.3172 | 0.8831 | 0.0886 | 0.0805 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | strict_all | full_benchmark_138k | 0.2879 | 0.2426 | 0.3165 | 0.8790 | 0.0886 | 0.0809 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | strict_all | full_benchmark_138k | 0.2849 | 0.2430 | 0.3101 | 0.8817 | 0.0887 | 0.0803 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | strict_all | full_benchmark_138k | 0.2817 | 0.2366 | 0.3088 | 0.8660 | 0.0879 | 0.0799 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | strict_all | full_benchmark_138k | 0.2784 | 0.2366 | 0.3047 | 0.8776 | 0.0884 | 0.0804 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | strict_all | full_benchmark_138k | 0.2784 | 0.2338 | 0.3000 | 0.8830 | 0.0885 | 0.0806 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | strict_all | full_benchmark_138k | 0.2734 | 0.2339 | 0.3019 | 0.8649 | 0.0869 | 0.0783 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | strict_all | full_benchmark_138k | 0.2730 | 0.2306 | 0.2975 | 0.8672 | 0.0878 | 0.0799 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | strict_all | full_benchmark_138k | 0.2601 | 0.2180 | 0.2824 | 0.8647 | 0.0884 | 0.0808 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | strict_all | full_benchmark_138k | 0.2594 | 0.2248 | 0.2909 | 0.8682 | 0.0873 | 0.0790 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | strict_all | full_benchmark_138k | 0.2256 | 0.1924 | 0.2521 | 0.8601 | 0.0875 | 0.0796 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | strict_all | full_benchmark_138k | 0.1842 | 0.1527 | 0.2024 | 0.8511 | 0.0866 | 0.0781 | True |
| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | very_high_confidence | oracle_panel_all_positive | 0.8396 | 0.7555 | 0.8741 | 0.9296 | 0.2016 | 0.1947 | False |
| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | very_high_confidence | oracle_panel_top250 | 0.8881 | 0.8171 | 0.9153 | 0.9222 | 0.4669 | 0.4510 | False |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | very_high_confidence | full_benchmark_138k | 0.7136 | 0.5814 | 0.7727 | 0.9842 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | very_high_confidence | full_benchmark_138k | 0.7117 | 0.5867 | 0.7695 | 0.9803 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6984 | 0.5645 | 0.7625 | 0.9831 | 0.0258 | 0.0255 | True |
| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | very_high_confidence | full_benchmark_138k | 0.6924 | 0.5508 | 0.7464 | 0.9844 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | very_high_confidence | full_benchmark_138k | 0.6751 | 0.5392 | 0.7317 | 0.9804 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | very_high_confidence | full_benchmark_138k | 0.6741 | 0.5416 | 0.7376 | 0.9773 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6708 | 0.5406 | 0.7307 | 0.9816 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | very_high_confidence | full_benchmark_138k | 0.6614 | 0.5348 | 0.7251 | 0.9776 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | very_high_confidence | full_benchmark_138k | 0.6440 | 0.5037 | 0.7074 | 0.9724 | 0.0255 | 0.0249 | True |
| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | very_high_confidence | full_benchmark_138k | 0.6179 | 0.5028 | 0.7055 | 0.9727 | 0.0254 | 0.0249 | True |
| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6096 | 0.4687 | 0.6710 | 0.9816 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.5192 | 0.3782 | 0.5887 | 0.9774 | 0.0256 | 0.0252 | True |
| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | very_high_confidence | full_benchmark_138k | 0.3723 | 0.2717 | 0.4553 | 0.9607 | 0.0252 | 0.0246 | True |