Update dataset card with paper/code links and task categories
#2
by nielsr HF Staff - opened
README.md
CHANGED
|
@@ -1,29 +1,34 @@
|
|
| 1 |
---
|
| 2 |
-
pretty_name: PrimeKG-CL
|
| 3 |
-
license: cc-by-4.0
|
| 4 |
-
task_categories:
|
| 5 |
-
- other
|
| 6 |
language:
|
| 7 |
- en
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 8 |
tags:
|
| 9 |
- biomedical
|
| 10 |
- knowledge-graph
|
| 11 |
- continual-learning
|
| 12 |
- link-prediction
|
| 13 |
-
size_categories:
|
| 14 |
-
- 10M<n<100M
|
| 15 |
---
|
| 16 |
|
| 17 |
# PrimeKG-CL
|
| 18 |
|
| 19 |
-
PrimeKG-CL is a continual graph learning benchmark built on an evolving biomedical knowledge graph. It
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20 |
|
| 21 |
This dataset repository stores the benchmark under the `benchmark/` directory.
|
| 22 |
|
| 23 |
## Dataset Summary
|
| 24 |
|
| 25 |
- **Domain:** Biomedical knowledge graphs
|
| 26 |
-
- **Primary use:** Continual knowledge graph completion / link prediction
|
| 27 |
- **Snapshots:**
|
| 28 |
- `benchmark/snapshots/kg_t0.csv` (June 2021 PrimeKG release): 8,100,498 triples, 129,375 nodes, 30 relations
|
| 29 |
- `benchmark/snapshots/kg_t1.csv` (July 2023 reconstruction): 13,001,666 triples, 134,211 nodes, 25 relations
|
|
@@ -51,11 +56,17 @@ This dataset repository stores the benchmark under the `benchmark/` directory.
|
|
| 51 |
- Task splits use 70/10/20 train/valid/test.
|
| 52 |
- Feature tensors are stored as `.pt` files.
|
| 53 |
|
| 54 |
-
##
|
| 55 |
|
| 56 |
-
|
| 57 |
-
|
| 58 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 59 |
|
| 60 |
## Limitations and Considerations
|
| 61 |
|
|
@@ -81,4 +92,4 @@ If you use this dataset, please cite:
|
|
| 81 |
booktitle={NeurIPS Datasets and Benchmarks Track},
|
| 82 |
year={2026}
|
| 83 |
}
|
| 84 |
-
```
|
|
|
|
| 1 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
| 2 |
language:
|
| 3 |
- en
|
| 4 |
+
license: cc-by-4.0
|
| 5 |
+
size_categories:
|
| 6 |
+
- 10M<n<100M
|
| 7 |
+
task_categories:
|
| 8 |
+
- graph-ml
|
| 9 |
+
- question-answering
|
| 10 |
+
pretty_name: PrimeKG-CL
|
| 11 |
tags:
|
| 12 |
- biomedical
|
| 13 |
- knowledge-graph
|
| 14 |
- continual-learning
|
| 15 |
- link-prediction
|
|
|
|
|
|
|
| 16 |
---
|
| 17 |
|
| 18 |
# PrimeKG-CL
|
| 19 |
|
| 20 |
+
PrimeKG-CL is a continual graph learning benchmark built on an evolving biomedical knowledge graph. It was introduced in the paper [PrimeKG-CL: A Continual Graph Learning Benchmark on Evolving Biomedical Knowledge Graphs](https://huggingface.co/papers/2605.10529).
|
| 21 |
+
|
| 22 |
+
- **Code:** [https://github.com/yradwan147/primekg-cl-neurips2026](https://github.com/yradwan147/primekg-cl-neurips2026)
|
| 23 |
+
|
| 24 |
+
PrimeKG-CL contains two temporal snapshots (`t0`, `t1`), temporal diffs, 10 continual-learning tasks, and multimodal node features for evaluating retention/forgetting under distribution shift.
|
| 25 |
|
| 26 |
This dataset repository stores the benchmark under the `benchmark/` directory.
|
| 27 |
|
| 28 |
## Dataset Summary
|
| 29 |
|
| 30 |
- **Domain:** Biomedical knowledge graphs
|
| 31 |
+
- **Primary use:** Continual knowledge graph completion / link prediction / KGQA
|
| 32 |
- **Snapshots:**
|
| 33 |
- `benchmark/snapshots/kg_t0.csv` (June 2021 PrimeKG release): 8,100,498 triples, 129,375 nodes, 30 relations
|
| 34 |
- `benchmark/snapshots/kg_t1.csv` (July 2023 reconstruction): 13,001,666 triples, 134,211 nodes, 25 relations
|
|
|
|
| 56 |
- Task splits use 70/10/20 train/valid/test.
|
| 57 |
- Feature tensors are stored as `.pt` files.
|
| 58 |
|
| 59 |
+
## Sample Usage
|
| 60 |
|
| 61 |
+
After setting up the environment using the `environment.yml` from the GitHub repository, you can run a baseline (e.g., EWC on DistMult) using the following command:
|
| 62 |
+
|
| 63 |
+
```bash
|
| 64 |
+
python scripts/run_baselines.py \
|
| 65 |
+
--method ewc --decoder DistMult \
|
| 66 |
+
--seeds 42 123 456 789 1024 \
|
| 67 |
+
--data_root data/benchmark \
|
| 68 |
+
--output results/
|
| 69 |
+
```
|
| 70 |
|
| 71 |
## Limitations and Considerations
|
| 72 |
|
|
|
|
| 92 |
booktitle={NeurIPS Datasets and Benchmarks Track},
|
| 93 |
year={2026}
|
| 94 |
}
|
| 95 |
+
```
|