Datasets:

---

zongyanliu

/

reloc

like 1

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'sid,Cell membrane,Cytoplasm,Endoplasmic reticulum,Golgi apparatus,Lysosome/Vacuole,Mitochondrion,Nucleus,Peroxisome,Lengths,fasta'}) and 1 missing columns ({',ACC,Kingdom,Partition,Membrane,Cytoplasm,Nucleus,Extracellular,Cell membrane,Mitochondrion,Plastid,Endoplasmic reticulum,Lysosome/Vacuole,Golgi apparatus,Peroxisome,Sequence'}).

This happened while the csv dataset builder was generating data using

hf://datasets/zongyanliu/reloc/data/DeepLoc/hpa_testset.csv (at revision 8509395db55b3037b8d8ad40ab31bf049b55abf5), ['hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/DeepLoc/Swissprot_Train_Validation_dataset.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/DeepLoc/hpa_testset.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/HPA/subcellular_location.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/HPA/subcellular_location.tsv.zip', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/PPDB/ppdb_localization.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/18_8_2022_suba5_FP.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/18_8_2022_suba5_MSMS.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/19_8_2022_suba5_summary.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_fungi_4751_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_metazoa_33208_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_viridiplantae_33090_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/cropPAL/cropPAL2020_localisations_18_8_20.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/aux_labels.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/aux_labels_plus.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/emb_input.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/fig3_gold_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/gold_candidates.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/gold_manual_worklist.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/labels_plant_isoform.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/labels_uniprot.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p0.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p1.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p2.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p3.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p4.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/new_seqs_to_extract.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/pair_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier1_gold_accepted.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier1_review_template.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier2_db_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier3_natural_negatives.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier3_synthetic_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/uniprot_human_seqs.tsv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
                  writer.write_table(table)
                  ~~~~~~~~~~~~~~~~~~^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                  ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              sid,Cell membrane,Cytoplasm,Endoplasmic reticulum,Golgi apparatus,Lysosome/Vacuole,Mitochondrion,Nuc (... 29 chars omitted): string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 638
              to
              {',ACC,Kingdom,Partition,Membrane,Cytoplasm,Nucleus,Extracellular,Cell membrane,Mitochondrion,Plastid,Endoplasmic reticulum,Lysosome/Vacuole,Golgi apparatus,Peroxisome,Sequence': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      builder, max_dataset_size_bytes=max_dataset_size_bytes
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                  ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1683, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^
                      gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  ):
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1839, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
                  ...<4 lines>...
                  )
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'sid,Cell membrane,Cytoplasm,Endoplasmic reticulum,Golgi apparatus,Lysosome/Vacuole,Mitochondrion,Nucleus,Peroxisome,Lengths,fasta'}) and 1 missing columns ({',ACC,Kingdom,Partition,Membrane,Cytoplasm,Nucleus,Extracellular,Cell membrane,Mitochondrion,Plastid,Endoplasmic reticulum,Lysosome/Vacuole,Golgi apparatus,Peroxisome,Sequence'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/zongyanliu/reloc/data/DeepLoc/hpa_testset.csv (at revision 8509395db55b3037b8d8ad40ab31bf049b55abf5), ['hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/DeepLoc/Swissprot_Train_Validation_dataset.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/DeepLoc/hpa_testset.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/HPA/subcellular_location.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/HPA/subcellular_location.tsv.zip', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/PPDB/ppdb_localization.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/18_8_2022_suba5_FP.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/18_8_2022_suba5_MSMS.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/SUBA5/19_8_2022_suba5_summary.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_fungi_4751_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_metazoa_33208_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/UniProt/uniprot_viridiplantae_33090_reviewed_full.tsv.gz', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/cropPAL/cropPAL2020_localisations_18_8_20.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/aux_labels.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/aux_labels_plus.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/emb_input.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/fig3_gold_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/gold_candidates.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/gold_manual_worklist.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/labels_plant_isoform.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/labels_uniprot.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p0.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p1.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p2.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p3.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_dedup_p4.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_plus_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/loc_extra_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/new_seqs_to_extract.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/pair_seqs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier1_gold_accepted.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier1_review_template.csv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier2_db_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier3_natural_negatives.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/tier3_synthetic_pairs.tsv', 'hf://datasets/zongyanliu/reloc@8509395db55b3037b8d8ad40ab31bf049b55abf5/data/processed/uniprot_human_seqs.tsv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)