ncbi/ncbi_disease
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How to use datummd/NCBI_BC5CDR_disease with Transformers:
# Use a pipeline as a high-level helper
from transformers import pipeline
pipe = pipeline("token-classification", model="datummd/NCBI_BC5CDR_disease") # Load model directly
from transformers import AutoTokenizer, AutoModelForTokenClassification
tokenizer = AutoTokenizer.from_pretrained("datummd/NCBI_BC5CDR_disease")
model = AutoModelForTokenClassification.from_pretrained("datummd/NCBI_BC5CDR_disease")BioBERT model fine-tuned in NER task with BC5CDR-diseases and NCBI-diseases corpus along with selected pubtator annotations from LitCOVID dataset
This was fine-tuned in order to use it in a datummd/bionlp system which is available at: https://github.com/datummd/bionlp