metadata
tags:
- chest-xray
- radiology
- report-generation
- mimic-cxr
license: apache-2.0
LAPVQA — Radiology Report Generation (Captioning-Pretrained Encoder)
Part of the LAPVQA collection.
Description
RRG decoder trained on the frozen LAPVQA captioning-pretrained encoder
(lapvqa-pretrain-captioning).
Checkpoint format: {state_dict, vis_dim, d_model, num_layers, nhead, encoder, epoch, val_bleu4}.
Loading
import torch
import tiktoken
from lapvqa.rrg.heads import ReportGenerationHead
ckpt = torch.load("pretrain-captioning.pt", map_location="cpu")
head = ReportGenerationHead(
vis_dim = ckpt["vis_dim"],
d_model = ckpt["d_model"],
num_layers = ckpt["num_layers"],
nhead = ckpt["nhead"],
)
head.load_state_dict(ckpt["state_dict"])
head.eval()
enc = tiktoken.get_encoding("gpt2")
bos_id = eos_id = enc.eot_token
# pair with encoder_final.pt from lapvqa-pretrain-captioning
token_ids = head.generate(vis_tokens, bos_id=bos_id, eos_id=eos_id)
reports = [enc.decode(ids) for ids in token_ids]