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simcse-dna

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Data Science for Social Impact 76

This repository contains the trained model for our manuscript, which is currently being reviewed by BMC Bioinformatics. This model, called simcse-dna, is based on the original implementation of SimCSE. The original model was adapted for DNA downstream tasks by training it on a small sample size k-mer tokens generated from the human reference genome, and can be used to generate sentence embeddings for DNA tasks.