ge8rgia/ChromBPNet-GH3-SOX2

Rat GH3 ChromBPNet Model

Description

ChromBPNet model trained on bulk ATAC-seq data from GH3 cells.

Files

• models/chrombpnet.h5 — Full ChromBPNet model
• models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
• models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

• Genome: mm10
• Cell type: GH3
• Data type: Bulk ATAC-seq
• Condition: SOX2 overexpression
• Bias model used: Tn5-bias-rn6-GH3/bias.h5
• Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of rat pituitary cell types.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full atlas: Pituitary ChromBPNet - Bulk ATAC-seq Models