Preganancy-Prediction / scripts /fetal_plane_classifier.py
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import os
import pandas as pd
import numpy as np
from PIL import Image
import torch
from torch.utils.data import Dataset, DataLoader
from transformers import ViTImageProcessor, ViTForImageClassification, TrainingArguments, Trainer
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import LabelEncoder
from sklearn.metrics import accuracy_score, classification_report
import warnings
import platform
warnings.filterwarnings('ignore')
def get_device():
if torch.backends.mps.is_available() and torch.backends.mps.is_built():
print("πŸš€ Using Apple Silicon MPS (Metal Performance Shaders)")
return torch.device("mps")
elif torch.cuda.is_available():
print("πŸš€ Using CUDA GPU")
return torch.device("cuda")
else:
print("πŸ’» Using CPU")
return torch.device("cpu")
def optimize_for_apple_silicon():
if platform.machine() == 'arm64':
os.environ['PYTORCH_ENABLE_MPS_FALLBACK'] = '1'
if torch.backends.mps.is_available():
try:
if hasattr(torch.backends.mps, 'empty_cache'):
torch.backends.mps.empty_cache()
except AttributeError:
pass
print("βœ… Apple Silicon optimizations enabled")
class FetalPlaneDataset(Dataset):
def __init__(self, image_paths, labels, processor, transform=None):
self.image_paths = image_paths
self.labels = labels
self.processor = processor
self.transform = transform
def __len__(self):
return len(self.image_paths)
def __getitem__(self, idx):
try:
image_path = self.image_paths[idx]
image = Image.open(image_path).convert('RGB')
if self.transform:
image = self.transform(image)
inputs = self.processor(images=image, return_tensors="pt")
pixel_values = inputs['pixel_values'].squeeze()
return {
'pixel_values': pixel_values,
'labels': torch.tensor(self.labels[idx], dtype=torch.long)
}
except Exception as e:
print(f"Error loading image {image_path}: {e}")
return self.__getitem__((idx + 1) % len(self.image_paths))
def load_and_preprocess_data(data_dir):
csv_path = os.path.join(data_dir, 'FETAL_PLANES_DB_data.csv')
images_dir = os.path.join(data_dir, 'Images')
df = pd.read_csv(csv_path, delimiter=';')
df['image_path'] = df['Image_name'].apply(lambda x: os.path.join(images_dir, f"{x}.png"))
existing_images = df[df['image_path'].apply(os.path.exists)]
print(f"Found {len(existing_images)} existing images out of {len(df)} total entries")
existing_images['combined_label'] = existing_images['Plane'] + '_' + existing_images['Brain_plane']
label_encoder = LabelEncoder()
existing_images['encoded_label'] = label_encoder.fit_transform(existing_images['combined_label'])
print("\nLabel distribution:")
print(existing_images['combined_label'].value_counts())
return existing_images, label_encoder
def compute_metrics(eval_pred):
predictions, labels = eval_pred
predictions = np.argmax(predictions, axis=1)
return {'accuracy': accuracy_score(labels, predictions)}
def train_fetal_plane_classifier(data_dir, output_dir='./fetal_plane_model', epochs=10, batch_size=16):
print("πŸ”¬ Initializing Fetal Plane Classifier Training")
print("=" * 50)
optimize_for_apple_silicon()
device = get_device()
if device.type == 'mps':
batch_size = min(batch_size, 8)
print(f"πŸ“± Optimized batch size for Apple Silicon: {batch_size}")
print("Loading and preprocessing data...")
df, label_encoder = load_and_preprocess_data(data_dir)
model_name = "google/vit-base-patch16-224-in21k"
processor = ViTImageProcessor.from_pretrained(model_name)
num_labels = len(label_encoder.classes_)
model = ViTForImageClassification.from_pretrained(
model_name,
num_labels=num_labels,
ignore_mismatched_sizes=True
)
model = model.to(device)
print(f"πŸ“± Model moved to device: {device}")
train_df, val_df = train_test_split(
df,
test_size=0.2,
random_state=42,
stratify=df['encoded_label']
)
print(f"Training samples: {len(train_df)}")
print(f"Validation samples: {len(val_df)}")
train_dataset = FetalPlaneDataset(
train_df['image_path'].tolist(),
train_df['encoded_label'].tolist(),
processor
)
val_dataset = FetalPlaneDataset(
val_df['image_path'].tolist(),
val_df['encoded_label'].tolist(),
processor
)
training_args = TrainingArguments(
output_dir=output_dir,
num_train_epochs=epochs,
per_device_train_batch_size=batch_size,
per_device_eval_batch_size=batch_size,
warmup_steps=min(500, len(train_df) // (batch_size * 4)),
weight_decay=0.01,
logging_dir=f'{output_dir}/logs',
logging_steps=50,
evaluation_strategy="epoch",
save_strategy="epoch",
load_best_model_at_end=True,
metric_for_best_model="accuracy",
greater_is_better=True,
save_total_limit=2,
remove_unused_columns=False,
dataloader_pin_memory=False,
dataloader_num_workers=0 if device.type == 'mps' else 2,
fp16=False,
bf16=False,
use_mps_device=device.type == 'mps',
gradient_accumulation_steps=2 if device.type == 'mps' else 1,
max_grad_norm=1.0,
lr_scheduler_type="cosine",
learning_rate=5e-5 if device.type == 'mps' else 2e-5,
)
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=val_dataset,
compute_metrics=compute_metrics,
)
print("Starting training...")
trainer.train()
print("Evaluating model...")
eval_results = trainer.evaluate()
print(f"Validation Accuracy: {eval_results['eval_accuracy']:.4f}")
print("Saving model and processor...")
model.save_pretrained(output_dir)
processor.save_pretrained(output_dir)
import joblib
joblib.dump(label_encoder, os.path.join(output_dir, 'label_encoder.pkl'))
print(f"Model saved to {output_dir}")
return model, processor, label_encoder, eval_results
def predict_fetal_plane(image_path, model_dir='./fetal_plane_model'):
device = get_device()
processor = ViTImageProcessor.from_pretrained(model_dir)
model = ViTForImageClassification.from_pretrained(model_dir)
model = model.to(device)
model.eval()
import joblib
label_encoder = joblib.load(os.path.join(model_dir, 'label_encoder.pkl'))
image = Image.open(image_path).convert('RGB')
inputs = processor(images=image, return_tensors="pt")
inputs = {k: v.to(device) for k, v in inputs.items()}
with torch.no_grad():
outputs = model(**inputs)
predictions = torch.nn.functional.softmax(outputs.logits, dim=-1)
predicted_class_idx = predictions.argmax().item()
confidence = predictions[0][predicted_class_idx].item()
predicted_label = label_encoder.inverse_transform([predicted_class_idx])[0]
return predicted_label, confidence
def main():
data_dir = '../datasets/FETAL_PLANES_ZENODO'
output_dir = '/Users/karthik/Projects/hackathon15092025/models/fetal_plane_model'
os.makedirs(output_dir, exist_ok=True)
print("πŸ”¬ Fetal Plane Classification Model Training")
print("🍎 Optimized for Apple Silicon (M4 Chip)")
print("=" * 50)
device = get_device()
optimal_batch_size = 4 if device.type == 'mps' else 8
optimal_epochs = 3 if device.type == 'mps' else 5
print(f"πŸ“Š Training Configuration:")
print(f" - Device: {device}")
print(f" - Batch Size: {optimal_batch_size}")
print(f" - Epochs: {optimal_epochs}")
print(f" - Architecture: {platform.machine()}")
model, processor, label_encoder, results = train_fetal_plane_classifier(
data_dir=data_dir,
output_dir=output_dir,
epochs=optimal_epochs,
batch_size=optimal_batch_size
)
print("\nβœ… Training completed successfully!")
print(f"Final validation accuracy: {results['eval_accuracy']:.4f}")
print("\nπŸ“‹ Available classes:")
for i, class_name in enumerate(label_encoder.classes_):
print(f"{i}: {class_name}")
sample_image = '/Users/karthik/Projects/hackathon15092025/FETAL_PLANES_ZENODO/Images/Patient00037_Plane1_1_of_3.png'
if os.path.exists(sample_image):
print(f"\nπŸ” Testing prediction on sample image: {sample_image}")
predicted_label, confidence = predict_fetal_plane(sample_image, output_dir)
print(f"Predicted: {predicted_label} (Confidence: {confidence:.3f})")
if __name__ == "__main__":
main()