| sample caller variant_ID is_pass svtype_DEL svtype_DUP svtype_INS svtype_INV svtype_BND svlen_log cipos_width ciend_width is_imprecise pe_support sr_support total_support vaf gt_hom gq qual_norm local_depth gc_min gc_max entropy_min microhom_max in_segdup_either in_segdup_both in_difficult_either in_difficult_both in_lowmap_either in_tandem_either in_Alu_either in_L1_either in_SVA_either in_LTR_either frac_span_repeat n_neighbors nn_log_dist CS_raw CS tier |
| HG00097 manta chr1:861885:BND:None 1 0 0 0 0 1 -99999.0 31.0 -99999.0 0 5.0 7.0 12.0 0.1538461538461538 0 182.0 182.0 43.0 0.297029702970297 0.297029702970297 1.6350564503142977 -99999.0 1 1 1 1 0 1 0 0 0 0 -99999.0 2 4.424979586745809 0.0077 0.0016 LOW |
| HG00097 manta chr1:888490:DEL:888577 1 1 0 0 0 0 1.944482672150169 55.0 -99999.0 0 0.0 5.0 5.0 0.2631578947368421 0 93.0 116.0 5.0 0.495049504950495 0.5247524752475248 1.119875913690787 50.0 1 1 1 1 0 1 0 0 0 0 1.0 2 4.20382130251655 0.7047 0.8104 HIGH |
| HG00097 manta chr1:904478:DEL:904576 1 1 0 0 0 0 1.99563519459755 14.0 -99999.0 0 0.0 10.0 10.0 0.4166666666666667 0 31.0 294.0 3.0 0.7227722772277227 0.7722772277227723 1.6490755403817534 14.0 0 0 1 1 0 1 0 0 0 0 1.0 3 4.20382130251655 0.616 0.6822 MODERATE |
| HG00097 manta chr1:998763:INS:None 1 0 0 1 0 0 1.7708520116421442 -99999.0 -99999.0 0 0.0 15.0 15.0 0.6521739130434783 0 43.0 538.0 -99999.0 0.7920792079207921 0.7920792079207921 1.6906469647232745 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 3 4.472888033769636 0.6379 0.7226 HIGH |
| HG00097 manta chr1:1028471:DEL:1029081 1 1 0 0 0 0 2.786041210242554 19.0 -99999.0 0 13.0 12.0 25.0 0.352112676056338 0 477.0 654.0 36.0 0.6534653465346535 0.7227722772277227 1.7262819301695698 19.0 0 0 1 1 0 1 0 0 0 0 1.0 2 4.472888033769636 0.809 0.8988 HIGH |
| HG00097 manta chr1:1068824:INS:None 1 0 0 1 0 0 1.8976270912904412 10.0 -99999.0 0 0.0 29.0 29.0 0.9666666666666668 1 75.0 999.0 -99999.0 0.8514851485148515 0.8514851485148515 1.5447689726449716 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 2 4.60588658966101 0.7489 0.8545 HIGH |
| HG00097 manta chr1:1427385:DEL:1427442 0 1 0 0 0 0 1.7634279935629371 -99999.0 -99999.0 0 0.0 2.0 2.0 0.1666666666666666 0 13.0 13.0 3.0 0.693069306930693 0.7029702970297029 1.3844773445130296 0.0 0 0 1 1 0 1 0 0 0 0 1.0 0 5.22457708545644 0.1506 0.1012 LOW |
| HG00097 manta chr1:1595101:DEL:1595183 1 1 0 0 0 0 1.919078092376074 2.0 -99999.0 0 0.0 10.0 10.0 0.1923076923076923 0 266.0 266.0 12.0 0.5148514851485149 0.5247524752475248 1.4455984547909615 2.0 0 0 1 1 1 1 0 0 0 0 1.0 1 4.856571815297643 0.4295 0.4349 WARNING |
| HG00097 manta chr1:1666974:DEL:1667141 1 1 0 0 0 0 2.225309281725863 18.0 -99999.0 0 11.0 21.0 32.0 1.0 1 59.0 888.0 11.0 0.5247524752475248 0.5445544554455446 1.9680479893568856 18.0 1 1 1 1 1 0 1 0 0 0 1.0 3 4.763375575548453 0.7289 0.8283 HIGH |
| HG00097 manta chr1:1724966:DEL:1726924 1 1 0 0 0 0 3.2920344359947364 27.0 27.0 0 8.0 10.0 18.0 0.2727272727272727 0 420.0 420.0 31.0 0.5643564356435643 0.6435643564356436 1.9231444533753872 27.0 1 1 1 1 1 1 1 0 0 0 1.0 2 4.391640703492388 0.8005 0.8964 HIGH |
| HG00097 manta chr1:1749605:INS:None 1 0 0 1 0 0 1.7075701760979365 23.0 -99999.0 0 0.0 10.0 10.0 0.3703703703703703 0 262.0 358.0 -99999.0 0.4752475247524752 0.4752475247524752 1.6885390899981634 -99999.0 1 1 1 1 1 1 0 0 0 0 -99999.0 2 4.391640703492388 0.7091 0.8117 HIGH |
| HG00097 manta chr1:1924223:INS:None 1 0 0 1 0 0 2.0170333392987803 10.0 -99999.0 0 0.0 16.0 16.0 1.0 1 41.0 630.0 -99999.0 0.7425742574257426 0.7425742574257426 1.6063691498853343 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 5 3.71281800020785 0.526 0.5557 MODERATE |
| HG00097 manta chr1:1929384:INS:None 1 0 0 1 0 0 -99999.0 5.0 5.0 0 0.0 19.0 19.0 1.0 1 39.0 580.0 -99999.0 0.693069306930693 0.693069306930693 1.4041502486751618 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 5 3.71281800020785 0.2185 0.1761 LOW |
| HG00097 manta chr1:1934989:DEL:1935584 1 1 0 0 0 0 2.7752462597402365 10.0 -99999.0 0 16.0 18.0 34.0 1.0 1 86.0 934.0 16.0 0.4455445544554455 0.504950495049505 1.8451028377340413 10.0 0 0 1 1 0 1 0 0 0 0 1.0 5 3.748653093424267 0.686 0.7801 HIGH |
| HG00097 manta chr1:1948934:INS:None 1 0 0 1 0 0 2.049218022670181 2.0 -99999.0 0 3.0 22.0 25.0 1.0 1 64.0 864.0 3.0 0.5643564356435643 0.5643564356435643 1.0561905395876316 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 5 4.1444496608689 0.7533 0.8545 HIGH |
| HG00097 manta chr1:1993704:INS:None 1 0 0 1 0 0 2.170261715394957 15.0 -99999.0 0 8.0 45.0 53.0 1.0 1 128.0 999.0 8.0 0.4752475247524752 0.4752475247524752 1.981211526197009 -99999.0 0 0 0 0 0 0 1 0 0 0 -99999.0 5 4.406829613621544 0.8105 0.8988 HIGH |
| HG00097 manta chr1:2019220:INS:None 1 0 0 1 0 0 -99999.0 23.0 23.0 0 2.0 12.0 14.0 1.0 1 20.0 261.0 2.0 0.8613861386138614 0.8613861386138614 1.3524948796891727 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 5 4.406829613621544 0.5454 0.5772 MODERATE |
| HG00097 manta chr1:2421838:BND:None 1 0 0 0 0 1 -99999.0 3.0 -99999.0 0 4.0 25.0 29.0 0.3766233766233766 0 582.0 999.0 23.0 0.495049504950495 0.495049504950495 1.983371708749389 -99999.0 0 0 1 1 0 1 1 0 0 0 -99999.0 0 5.255942731372637 0.002 0.0003 LOW |
| HG00097 manta chr1:2602115:DUP:2602189 1 0 1 0 0 0 1.8750612633917 -99999.0 -99999.0 0 0.0 11.0 11.0 0.1294117647058823 0 255.0 255.0 30.0 0.5643564356435643 0.6435643564356436 1.913521655146875 1.0 0 0 0 0 0 0 0 0 0 0 0.0 1 1.6989700043360187 0.0 0.0 LOW |
| HG00097 manta chr1:2602164:INS:None 1 0 0 1 0 0 1.919078092376074 -99999.0 -99999.0 0 0.0 22.0 22.0 0.6470588235294118 0 137.0 697.0 -99999.0 0.594059405940594 0.594059405940594 1.9680479893568856 -99999.0 0 0 0 0 0 0 0 0 0 0 -99999.0 1 1.6989700043360187 0.7853 0.8865 HIGH |
| HG00097 manta chr1:3026038:INS:None 0 0 0 1 0 0 -99999.0 5.0 5.0 0 2.0 26.0 28.0 0.875 1 6.0 831.0 6.0 0.4851485148514851 0.4851485148514851 1.556688426030284 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 0 5.192483819902663 0.8821 0.935 HIGH |
| HG00097 manta chr1:3181807:DEL:3181925 1 1 0 0 0 0 2.075546961392531 14.0 -99999.0 0 0.0 27.0 27.0 1.0 1 65.0 999.0 -99999.0 0.4455445544554455 0.4653465346534653 1.939544697237768 14.0 0 0 1 1 0 1 0 0 0 0 1.0 2 4.525860772931853 0.6932 0.798 HIGH |
| HG00097 manta chr1:3215369:INS:None 1 0 0 1 0 0 1.792391689498254 54.0 -99999.0 0 0.0 27.0 27.0 1.0 1 68.0 999.0 -99999.0 0.6831683168316832 0.6831683168316832 1.850366467248344 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 2 4.525860772931853 0.8417 0.9154 HIGH |
| HG00097 manta chr1:3260742:INS:None 1 0 0 1 0 0 -99999.0 5.0 5.0 0 8.0 29.0 37.0 1.0 1 95.0 999.0 8.0 0.4752475247524752 0.4752475247524752 1.6383659495376368 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 3 4.656807066710448 0.8274 0.9091 HIGH |
| HG00097 manta chr1:3316611:DEL:3316667 1 1 0 0 0 0 1.7558748556724917 23.0 -99999.0 0 0.0 10.0 10.0 0.3703703703703703 0 177.0 306.0 5.0 0.495049504950495 0.495049504950495 1.8200734972498984 23.0 0 0 1 1 0 1 0 0 0 0 1.0 1 4.747178671360165 0.8483 0.917 HIGH |
| HG00097 manta chr1:3832372:DEL:3832444 1 1 0 0 0 0 1.863322860120456 45.0 -99999.0 0 0.0 5.0 5.0 0.625 0 25.0 127.0 1.0 0.5247524752475248 0.5841584158415841 1.9137004533259432 45.0 0 0 1 1 0 1 0 0 0 0 1.0 2 4.560086048497414 0.6316 0.7133 HIGH |
| HG00097 manta chr1:3868686:INS:None 1 0 0 1 0 0 2.4712917110589387 1.0 -99999.0 0 4.0 38.0 42.0 1.0 1 29.0 708.0 4.0 0.6336633663366337 0.6336633663366337 1.5250608688455582 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 2 4.560086048497414 0.6765 0.7715 HIGH |
| HG00097 manta chr1:3929498:INS:None 1 0 0 1 0 0 2.4668676203541096 4.0 -99999.0 0 2.0 27.0 29.0 1.0 1 62.0 707.0 2.0 0.4455445544554455 0.4455445544554455 1.4880199108409586 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 3 4.7839964283643 0.4086 0.3836 WARNING |
| HG00097 manta chr1:3999775:DEL:3999895 1 1 0 0 0 0 2.08278537031645 -99999.0 -99999.0 0 0.0 25.0 25.0 1.0 1 73.0 999.0 -99999.0 0.6633663366336634 0.693069306930693 1.7648687041978608 1.0 0 0 1 1 1 1 0 0 0 0 1.0 1 4.846819393669543 0.7755 0.874 HIGH |
| HG00097 manta chr1:4129813:DEL:4129873 1 1 0 0 0 0 1.7853298350107671 45.0 -99999.0 0 0.0 9.0 9.0 0.3461538461538461 0 162.0 312.0 6.0 0.6039603960396039 0.6831683168316832 1.8738460050301151 45.0 0 0 1 1 0 1 0 0 0 0 1.0 2 4.16660770308391 0.8085 0.8988 HIGH |
| HG00097 manta chr1:4144488:DUP:4144620 0 0 1 0 0 0 2.123851640967086 4.0 4.0 0 0.0 22.0 22.0 0.4313725490196078 0 332.0 518.0 11.0 0.4257425742574257 0.4851485148514851 1.4784771363149791 4.0 0 0 1 1 0 1 0 0 0 0 1.0 2 2.14921911265538 0.0007 0.0 LOW |
| HG00097 manta chr1:4144628:INS:None 0 0 0 1 0 0 1.9084850188786495 2.0 -99999.0 0 0.0 28.0 28.0 1.0 1 71.0 982.0 -99999.0 0.4851485148514851 0.4851485148514851 1.4687802326926382 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 2 2.14921911265538 0.1717 0.1265 LOW |
| HG00097 manta chr1:4333580:BND:None 1 0 0 0 0 1 -99999.0 -99999.0 -99999.0 0 12.0 0.0 12.0 0.5 0 142.0 142.0 24.0 0.5643564356435643 0.5643564356435643 1.9623130244403804 -99999.0 0 0 1 1 0 1 0 0 0 1 -99999.0 1 3.465680211598278 0.0055 0.0012 LOW |
| HG00097 manta chr1:4336501:INS:None 1 0 0 1 0 0 -99999.0 27.0 27.0 0 3.0 37.0 40.0 1.0 1 68.0 929.0 3.0 0.4059405940594059 0.4059405940594059 1.747964514410695 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 1 3.465680211598278 0.7674 0.8684 HIGH |
| HG00097 manta chr1:4939764:BND:None 0 0 0 0 0 1 -99999.0 599.0 -99999.0 1 14.0 0.0 14.0 0.4117647058823529 0 115.0 115.0 34.0 0.4554455445544554 0.4554455445544554 1.9728402340561 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 0 5.133363239048624 0.0303 0.0134 LOW |
| HG00097 manta chr1:5075708:INS:None 1 0 0 1 0 0 1.863322860120456 13.0 -99999.0 0 0.0 12.0 12.0 1.0 1 26.0 288.0 -99999.0 0.0792079207920792 0.0792079207920792 1.3986907959255488 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 1 4.927334427020689 0.749 0.8545 HIGH |
| HG00097 manta chr1:5160300:INS:None 0 0 0 1 0 0 2.765668554759014 -99999.0 -99999.0 0 0.0 46.0 46.0 0.92 1 52.0 999.0 4.0 0.3762376237623762 0.3762376237623762 1.7050759800383022 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 1 4.927334427020689 0.7965 0.8914 HIGH |
| HG00097 manta chr1:5387025:BND:None 1 0 0 0 0 1 -99999.0 466.0 -99999.0 1 15.0 0.0 15.0 0.6 0 116.0 228.0 25.0 0.5148514851485149 0.5148514851485149 1.3511081047001698 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 2 2.161368002234975 0.0015 0.0 LOW |
| HG00097 manta chr1:5387169:DUP:5387401 1 0 1 0 0 0 2.367355921026019 -99999.0 -99999.0 0 1.0 23.0 24.0 0.4285714285714285 0 338.0 481.0 13.0 0.4554455445544554 0.4752475247524752 1.5481463016741694 0.0 0 0 1 1 0 1 0 0 0 0 1.0 2 2.161368002234975 0.0005 0.0 LOW |
| HG00097 manta chr1:5414152:DEL:5414227 1 1 0 0 0 0 1.8808135922807916 18.0 -99999.0 0 0.0 7.0 7.0 0.3333333333333333 0 102.0 157.0 6.0 0.5346534653465347 0.5346534653465347 1.9698531038077964 18.0 0 0 1 1 0 1 0 0 0 0 1.0 3 4.431106328181145 0.6073 0.67 MODERATE |
| HG00097 manta chr1:5499440:DEL:5499546 1 1 0 0 0 0 2.0293837776852097 8.0 -99999.0 0 0.0 9.0 9.0 0.2195121951219512 0 276.0 276.0 7.0 0.2673267326732673 0.2673267326732673 1.6246863594780123 8.0 0 0 1 1 0 1 0 0 0 0 1.0 2 4.930893022406026 0.5474 0.5784 MODERATE |
| HG00097 manta chr1:5593288:INS:None 1 0 0 1 0 0 1.806179973983887 2.0 -99999.0 0 0.0 22.0 22.0 0.6470588235294118 0 142.0 889.0 -99999.0 0.5544554455445545 0.5544554455445545 1.989225629887876 -99999.0 0 0 0 0 0 0 0 0 0 0 -99999.0 2 4.9076585372801205 0.9166 0.9509 HIGH |
| HG00097 manta chr1:5674133:BND:None 0 0 0 0 0 1 -99999.0 7.0 -99999.0 0 11.0 47.0 58.0 0.3020833333333333 0 999.0 999.0 78.0 0.3861386138613861 0.3861386138613861 1.905091895547532 -99999.0 0 0 0 0 0 0 0 1 0 0 -99999.0 1 4.9076585372801205 0.0368 0.0188 LOW |
| HG00097 manta chr1:5874228:INS:None 1 0 0 1 0 0 2.453318340047037 13.0 -99999.0 0 18.0 23.0 41.0 0.5394736842105263 0 327.0 571.0 37.0 0.4455445544554455 0.4455445544554455 1.9714887292053216 -99999.0 0 0 0 0 0 0 0 0 0 0 -99999.0 0 5.116717299877443 0.9601 0.9697 HIGH |
| HG00097 manta chr1:6005060:DEL:6005340 1 1 0 0 0 0 2.44870631990508 -99999.0 -99999.0 0 14.0 15.0 29.0 0.9666666666666668 1 23.0 314.0 15.0 0.6237623762376238 0.6831683168316832 1.5376840111363732 2.0 0 0 1 1 0 1 0 0 0 0 1.0 1 4.317666442356501 0.7321 0.8286 HIGH |
| HG00097 manta chr1:6025840:DEL:6025908 1 1 0 0 0 0 1.8388490907372552 74.0 -99999.0 0 0.0 6.0 6.0 0.2222222222222222 0 182.0 184.0 9.0 0.6435643564356436 0.7029702970297029 1.7307956407165326 50.0 0 0 1 1 1 1 0 0 0 0 1.0 1 4.317666442356501 0.876 0.9325 HIGH |
| HG00097 manta chr1:6742557:INS:None 1 0 0 1 0 0 -99999.0 4.0 4.0 0 5.0 31.0 36.0 1.0 1 101.0 999.0 5.0 0.0792079207920792 0.0792079207920792 1.320097363865938 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 0 5.297445341827969 0.6745 0.7695 HIGH |
| HG00097 manta chr1:6940912:INS:None 1 0 0 1 0 0 -99999.0 4.0 4.0 0 0.0 34.0 34.0 0.9714285714285714 1 95.0 999.0 -99999.0 0.6336633663366337 0.6336633663366337 1.902230293166466 -99999.0 0 0 0 0 0 0 0 0 0 0 -99999.0 1 4.635272580112365 0.7578 0.8633 HIGH |
| HG00097 manta chr1:6984090:INS:None 1 0 0 1 0 0 2.311753861055754 2.0 -99999.0 0 6.0 35.0 41.0 1.0 1 72.0 999.0 6.0 0.4851485148514851 0.4851485148514851 1.5136654464703396 -99999.0 0 0 1 1 0 1 0 0 0 0 -99999.0 1 4.635272580112365 0.8751 0.9325 HIGH |
| HG00097 manta chr1:7510011:DEL:7511458 1 1 0 0 0 0 3.1607685618611283 -99999.0 -99999.0 0 11.0 15.0 26.0 0.3661971830985915 0 527.0 711.0 35.0 0.4653465346534653 0.4851485148514851 1.817566994368736 0.0 0 0 1 0 0 1 0 0 0 0 0.0151933701657458 1 4.512457586197344 0.7788 0.8742 HIGH |
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