Installation

pip install -U pip setuptools wheel
pip install "en-core-med7-trf @ https://huggingface.co/kormilitzin/en_core_med7_trf/resolve/main/en_core_med7_trf-1.1.0-py3-none-any.whl"

en_core_med7_trf

en_core_med7_trf is a transformer-based spaCy pipeline for medication-related named entity recognition in English clinical text.

The model extracts the following entity types:

• DRUG
• STRENGTH
• DOSAGE
• DURATION
• FREQUENCY
• FORM
• ROUTE

Version

Current release: 1.1.0

This release was retrained and repackaged for the modern spaCy/transformers stack:

• Python 3.12.13
• spaCy 3.8.14
• spacy-transformers 1.4.0
• transformers 4.53.2
• tokenizers 0.21.4
• torch 2.6.0+cu118

This version replaces the previous 1.0.0 wheel, which depended on an older spacy-transformers stack and could trigger installation problems on Python 3.12.

Citation

If you use this model, please cite the original Med7 paper:

Kormilitzin, A., Vaci, N., Liu, Q., & Nevado-Holgado, A. (2021). Med7: A transferable clinical natural language processing model for electronic health records. Artificial Intelligence in Medicine, 118, 102086. https://doi.org/10.1016/j.artmed.2021.102086

BibTeX:

@article{kormilitzin2021med7,
  title = {Med7: A transferable clinical natural language processing model for electronic health records},
  author = {Kormilitzin, Andrey and Vaci, Nemanja and Liu, Qiang and Nevado-Holgado, Alejo},
  journal = {Artificial Intelligence in Medicine},
  volume = {118},
  pages = {102086},
  year = {2021},
  doi = {10.1016/j.artmed.2021.102086},
  publisher = {Elsevier}
}