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kouroshSA
/
ppiGPLM
like
0
Text Generation
PyTorch
protein-protein-interaction
ppi
protein-language-model
gpt-2
nanogpt
character-level
trained-from-scratch
bioinformatics
biology
License:
mit
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ppiGPLM
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1 contributor
History:
4 commits
kouroshSA
Quick-start: document how to wire the downloaded ckpt into the inference script (model_dir + hardcoded ckpt.pt rename, configurator override, meta.pkl path)
a6dfb61
verified
6 days ago
assets
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
checkpoints
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
config
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
data
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
.gitattributes
1.64 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
.gitignore
571 Bytes
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6 days ago
LES-wrapper.md
5.65 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
LES-wrapper.py
26.7 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
LICENSE
2.04 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
MED4-PPIs-low-confidence_ppiGPLM_prompts.csv
6.98 MB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
MED4_100_PRS.csv
52.2 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
MED4_100_RRS.csv
52.5 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
README.md
9.66 kB
Quick-start: document how to wire the downloaded ckpt into the inference script (model_dir + hardcoded ckpt.pt rename, configurator override, meta.pkl path)
6 days ago
configurator.py
Safe
1.76 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
model.py
Safe
16.3 kB
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6 days ago
requirements.txt
138 Bytes
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6 days ago
roc_analysis_color_threshold_F1e.py
Safe
7.79 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
sample_fasta3.3_softmax_error_handling3e.py
7.35 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago
train_.py
14.7 kB
Mirror of github.com/kouroshSA/ppiGPLM + MED4 ckpt_7e checkpoint and sidecar note
6 days ago