Madhavan Venkatesh

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New activity in ctheodoris/Geneformer over 1 year ago

RuntimeError: CUDA error: device-side assert triggered during Geneformer validation

2

#411 opened over 1 year ago by

fs00431

New activity in madhavanvenkatesh/staging over 1 year ago

Create testbook.ipynb

#1 opened over 1 year ago by

mvenk

New activity in ctheodoris/Geneformer over 1 year ago

Upload Multi-Task_cell_classification.ipynb

#417 opened over 1 year ago by

madhavanvenkatesh

CUDA kernels incompatible with standard PyTorch device movement with 4bit/8bit, necessitating device-specific handling

#416 opened over 1 year ago by

madhavanvenkatesh

remove token dictionary and unpickling from init

#403 opened over 1 year ago by

madhavanvenkatesh

dictionaries from parent dir

#405 opened over 1 year ago by

madhavanvenkatesh

parent directory for dictionary

#404 opened over 1 year ago by

madhavanvenkatesh

inheritance issues

#396 opened over 1 year ago by

madhavanvenkatesh

Errors from the new version of the geneformer (classifier.py)

10

#394 opened over 1 year ago by

bsb0613

add peft==0.11.1 to req

#386 opened over 1 year ago by

madhavanvenkatesh

comment out "def save_model_without_heads(original_model_save_directory)"; redundant for ISP/Emb extractor

#383 opened over 1 year ago by

madhavanvenkatesh

New activity in ctheodoris/Geneformer over 2 years ago

Package errors when running hyperparam_optimiz_for_disease_classifier.py

6

#217 opened over 2 years ago by

swang12

what does "/path/to/miniconda3/lib:/path/to/sw/lib:/path/to/sw/lib" refer to?

1

#236 opened over 2 years ago by

kamisama0101

Conflicted version of "protobuf" in "ray" and "BertForSequenceClassification"

1

#218 opened over 2 years ago by

kamisama0101

Package errors when running hyperparam_optimiz_for_disease_classifier.py

6

#217 opened over 2 years ago by

swang12