pino-source-code / src /pino /train_hf.py
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feat(embeddings): expand input token from 145-D to 151-D with physical-functional payload
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from __future__ import annotations
import json
import logging
import os
import random
import torch.multiprocessing as mp
from pathlib import Path
from typing import Any
import numpy as np
import torch
from datasets import load_dataset
from sentence_transformers import SentenceTransformer
from transformers import Trainer, TrainingArguments
from pino.pimt_model import FragranceTrajectoryDataset, DEFAULT_EMBEDDING_DIM
from pino.pimt_model_hf import PIMTConfig, PhysicsInformedMixtureTransformer
logger = logging.getLogger("pino.train_hf")
_TEXT_ENCODER: SentenceTransformer | None = None
def get_text_encoder() -> SentenceTransformer:
global _TEXT_ENCODER
if _TEXT_ENCODER is None:
_TEXT_ENCODER = SentenceTransformer("sentence-transformers/all-MiniLM-L6-v2")
return _TEXT_ENCODER
def seed_everything(seed: int = 42) -> None:
"""Lock all RNGs for fully reproducible training runs."""
random.seed(seed)
os.environ["PYTHONHASHSEED"] = str(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
def pad_trajectory_collate(batch: list) -> dict:
"""Custom collate for variable-length ingredient formulations with text conditioning."""
max_molecules = max(item["tokens"].size(0) for item in batch)
max_timesteps = max(item["physics"].size(0) for item in batch)
bsz = len(batch)
tokens = torch.zeros(bsz, max_molecules, DEFAULT_EMBEDDING_DIM, dtype=torch.float32)
physics = torch.zeros(bsz, max_timesteps, max_molecules, 2, dtype=torch.float32)
src_key_padding_mask = torch.ones(bsz, max_molecules, dtype=torch.bool)
labels_obj = torch.zeros(bsz, max_timesteps, 138, dtype=torch.float32)
labels_sub = torch.zeros(bsz, 7, dtype=torch.float32)
genre_labels = torch.zeros(bsz, dtype=torch.int64)
# Encode text on-the-fly using sentence-transformers only if a record is missing
# its pre-computed embedding. This avoids loading the encoder inside forked
# dataloader workers (which can fail on CUDA re-init).
text_encoder = None
text_embeddings = torch.zeros(bsz, 384, dtype=torch.float32)
for i, item in enumerate(batch):
n_mol = item["tokens"].size(0)
t_steps = item["physics"].size(0)
tokens[i, :n_mol] = item["tokens"]
physics[i, :t_steps, :n_mol] = item["physics"]
src_key_padding_mask[i, :n_mol] = False
labels_obj[i, :t_steps] = item["target_obj"]
labels_sub[i] = item["target_sub"]
if "text_embedding" in item:
text_embeddings[i] = item["text_embedding"].clone().detach().float() if torch.is_tensor(item["text_embedding"]) else torch.tensor(item["text_embedding"], dtype=torch.float32)
elif "text_conditioning" in item:
if text_encoder is None:
text_encoder = get_text_encoder()
emb = text_encoder.encode(item["text_conditioning"], convert_to_numpy=True)
text_embeddings[i] = torch.from_numpy(emb).float()
# Fuse objective and subjective labels into a single (B, T, 151) tensor for HF Trainer (legacy shape).
labels_sub_t = labels_sub.unsqueeze(1).expand(-1, max_timesteps, -1)
labels = torch.cat([labels_obj, labels_sub_t], dim=-1)
return {
"tokens": tokens,
"physics": physics,
"src_key_padding_mask": src_key_padding_mask,
"text_embedding": text_embeddings,
"labels": labels,
}
def compute_metrics(eval_pred) -> dict[str, float]:
"""
Compute isolated objective and subjective metrics from eval predictions.
"""
predictions, labels = eval_pred
obj_pred = predictions[:, :, :138]
obj_true = labels[:, :, :138]
sub_pred = predictions[:, 0, 138:]
sub_true = labels[:, 0, 138:]
obj_mse = float(np.mean((obj_pred - obj_true) ** 2))
sub_mae = float(np.mean(np.abs(sub_pred - sub_true)))
return {
"objective_mse": round(obj_mse, 6),
"subjective_mae": round(sub_mae, 6),
"eval_loss": round(obj_mse + 0.5 * sub_mae, 6),
}
def export_publication_metrics(
trainer: Trainer,
val_ds: FragranceTrajectoryDataset,
output_path: str = "data/publication_metrics.json",
) -> None:
"""Run evaluation on the validation set and save raw prediction/target pairs."""
logger.info("Exporting publication validation metrics to %s", output_path)
predictions = trainer.predict(val_ds)
pred_arr = predictions.predictions
true_arr = predictions.label_ids
obj_pred = pred_arr[:, :, :138]
obj_true = true_arr[:, :, :138]
sub_pred = pred_arr[:, 0, 138:]
sub_true = true_arr[:, 0, 138:]
# Save a subset (first 200 records) for graphing predicted-vs-actual.
subset_size = min(200, obj_pred.shape[0])
metrics = {
"objective": {
"predictions": obj_pred[:subset_size].tolist(),
"targets": obj_true[:subset_size].tolist(),
"mse": float(np.mean((obj_pred - obj_true) ** 2)),
},
"subjective": {
"predictions": sub_pred[:subset_size].tolist(),
"targets": sub_true[:subset_size].tolist(),
"mae": float(np.mean(np.abs(sub_pred - sub_true))),
},
}
Path(output_path).parent.mkdir(parents=True, exist_ok=True)
Path(output_path).write_text(json.dumps(metrics, indent=2))
logger.info("Publication metrics saved")
def run_training() -> None:
"""Entry point used by the Hugging Face training Space."""
main()
def main() -> None:
# Use spawn for dataloader workers so CUDA is safe with multiprocessing.
try:
mp.set_start_method("spawn", force=True)
except Exception:
pass
logging.basicConfig(
level=logging.INFO,
format="%(asctime)s %(levelname)s %(name)s: %(message)s",
)
logger.info("Training PIMT with Hugging Face transformers")
seed = 42
seed_everything(seed)
# Load the verified stratified partitions from the Hugging Face Hub.
logger.info("Loading PINO synthetic dataset from Hugging Face Hub")
hub_dataset = load_dataset("mattbitzesty/pino-synthetic-dataset")
train_records = list(hub_dataset["train"])
val_records = list(hub_dataset["validation"])
train_ds = FragranceTrajectoryDataset(records=train_records, use_embedding_fallback=True)
val_ds = FragranceTrajectoryDataset(records=val_records, use_embedding_fallback=True)
config = PIMTConfig(
embedding_dim=DEFAULT_EMBEDDING_DIM,
objective_dim=138,
state_dim=2,
hidden_dim=256,
num_heads=8,
num_layers=4,
num_classes_sub=7,
)
model = PhysicsInformedMixtureTransformer(config)
training_args = TrainingArguments(
output_dir="./models/pino_publication_run",
do_train=True,
do_eval=True,
evaluation_strategy="epoch",
num_train_epochs=5,
per_device_train_batch_size=32,
per_device_eval_batch_size=32,
fp16=True,
gradient_accumulation_steps=4,
dataloader_num_workers=2,
dataloader_pin_memory=True,
logging_steps=10,
logging_dir="./logs/tensorboard",
logging_strategy="steps",
report_to=["tensorboard"],
save_strategy="epoch",
save_total_limit=2,
load_best_model_at_end=True,
metric_for_best_model="eval_loss",
greater_is_better=False,
disable_tqdm=False,
seed=seed,
remove_unused_columns=False,
push_to_hub=True,
hub_model_id="mattbitzesty/pino-pimt",
hub_strategy="end",
)
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_ds,
eval_dataset=val_ds,
data_collator=pad_trajectory_collate,
compute_metrics=compute_metrics,
)
trainer.train()
export_publication_metrics(trainer, val_ds)
logger.info("HF training complete")
if __name__ == "__main__":
main()