Instructions to use nferruz/ProtGPT2 with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use nferruz/ProtGPT2 with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("text-generation", model="nferruz/ProtGPT2")# Load model directly from transformers import AutoTokenizer, AutoModelForCausalLM tokenizer = AutoTokenizer.from_pretrained("nferruz/ProtGPT2") model = AutoModelForCausalLM.from_pretrained("nferruz/ProtGPT2") - Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- vLLM
How to use nferruz/ProtGPT2 with vLLM:
Install from pip and serve model
# Install vLLM from pip: pip install vllm # Start the vLLM server: vllm serve "nferruz/ProtGPT2" # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:8000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "nferruz/ProtGPT2", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker
docker model run hf.co/nferruz/ProtGPT2
- SGLang
How to use nferruz/ProtGPT2 with SGLang:
Install from pip and serve model
# Install SGLang from pip: pip install sglang # Start the SGLang server: python3 -m sglang.launch_server \ --model-path "nferruz/ProtGPT2" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "nferruz/ProtGPT2", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker images
docker run --gpus all \ --shm-size 32g \ -p 30000:30000 \ -v ~/.cache/huggingface:/root/.cache/huggingface \ --env "HF_TOKEN=<secret>" \ --ipc=host \ lmsysorg/sglang:latest \ python3 -m sglang.launch_server \ --model-path "nferruz/ProtGPT2" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "nferruz/ProtGPT2", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }' - Docker Model Runner
How to use nferruz/ProtGPT2 with Docker Model Runner:
docker model run hf.co/nferruz/ProtGPT2
More examples how to generate de novo proteins
#17
by MartinMaon - opened
Hello,
first I would like to really appreciate all the effort to build this protein language model. I would like to ask if there are some examples how to use your model, how to generate de novo proteins, or what parameters could be set up to generate these new proteins. As a ML specialist I see a big potential in your model, but not able to explain and show it easily to my colleagues (biologists) how it can be beneficial. Thank you for your reaction in advance.