Ctrl+K

1 contributor

History: 15 commits

nickrb

Re-translate protenix-v2 under jax 0.10

81a257b verified 13 days ago

.gitattributes

1.91 kB
Upload protenix-v2.eqx with huggingface_hub about 1 month ago
LICENSE

11.8 kB
Upload LICENSE with huggingface_hub about 1 month ago
README.md

3.73 kB
Upload README.md with huggingface_hub about 1 month ago
clusters-by-entity-40.txt

9.39 MB
Upload clusters-by-entity-40.txt with huggingface_hub 3 months ago
components.v20240608.cif

428 MB
xet

Upload components.v20240608.cif with huggingface_hub 3 months ago
components.v20240608.cif.rdkit_mol.pkl
Detected Pickle imports (4)
- "rdkit.Chem.rdchem.Mol",
- "numpy.ndarray",
- "numpy.core.multiarray._reconstruct",
- "numpy.dtype"
How to fix it?
126 MB
xet

Upload components.v20240608.cif.rdkit_mol.pkl with huggingface_hub 3 months ago
protenix-v2.eqx

1.86 GB
xet

Upload protenix-v2.eqx with huggingface_hub about 1 month ago
protenix-v2.pt
Detected Pickle imports (3)
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
1.86 GB
xet

Upload protenix-v2.pt with huggingface_hub about 1 month ago
protenix-v2.skeleton.pkl
Detected Pickle imports (40)
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.MSAStack",
- "protenix.protenij.MSABlock",
- "protenix.protenij.Protenix",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.backend.relu",
- "protenix.backend.softmax",
- "protenix.protenij.DistogramHead",
- "protenix.backend.LayerNorm",
- "protenix.protenij.Attention",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.MSAPairWeightedAveraging",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.protenij.TriangleAttention",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionTransformerBlock",
- "numpy.dtype",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.AtomAttentionDecoder",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.Sequential",
- "protenix.protenij.ProtenixAttention",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.FourierEmbedding",
- "protenix.backend.Identity",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.ConfidenceHead",
- "protenix.backend.Linear",
- "jax.ShapeDtypeStruct",
- "protenix.backend.sigmoid",
- "protenix.protenij.MSAModule",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.Transition",
- "protenix.protenij.Dropout",
- "protenix.protenij.DiffusionTransformer"
How to fix it?
39.2 kB
xet

Re-translate protenix-v2 under jax 0.10 13 days ago
protenix_base_20250630_v1.0.0.eqx

1.47 GB
xet

Upload folder using huggingface_hub 3 months ago
protenix_base_20250630_v1.0.0.skeleton.pkl
Detected Pickle imports (40)
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.MSAStack",
- "protenix.protenij.MSABlock",
- "protenix.protenij.Protenix",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.backend.relu",
- "protenix.backend.softmax",
- "protenix.protenij.DistogramHead",
- "protenix.backend.LayerNorm",
- "protenix.protenij.Attention",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.MSAPairWeightedAveraging",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.protenij.TriangleAttention",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionTransformerBlock",
- "numpy.dtype",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.AtomAttentionDecoder",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.Sequential",
- "protenix.protenij.ProtenixAttention",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.FourierEmbedding",
- "protenix.backend.Identity",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.ConfidenceHead",
- "protenix.backend.Linear",
- "jax.ShapeDtypeStruct",
- "protenix.backend.sigmoid",
- "protenix.protenij.MSAModule",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.Transition",
- "protenix.protenij.Dropout",
- "protenix.protenij.DiffusionTransformer"
How to fix it?
39.1 kB
xet

Re-translate protenix_base_20250630_v1.0.0 under jax 0.10 13 days ago
protenix_base_default_v1.0.0.eqx

1.47 GB
xet

Upload folder using huggingface_hub 3 months ago
protenix_base_default_v1.0.0.skeleton.pkl
Detected Pickle imports (40)
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.MSAStack",
- "protenix.protenij.MSABlock",
- "protenix.protenij.Protenix",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.backend.relu",
- "protenix.backend.softmax",
- "protenix.protenij.DistogramHead",
- "protenix.backend.LayerNorm",
- "protenix.protenij.Attention",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.MSAPairWeightedAveraging",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.protenij.TriangleAttention",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionTransformerBlock",
- "numpy.dtype",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.AtomAttentionDecoder",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.Sequential",
- "protenix.protenij.ProtenixAttention",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.FourierEmbedding",
- "protenix.backend.Identity",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.ConfidenceHead",
- "protenix.backend.Linear",
- "jax.ShapeDtypeStruct",
- "protenix.backend.sigmoid",
- "protenix.protenij.MSAModule",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.Transition",
- "protenix.protenij.Dropout",
- "protenix.protenij.DiffusionTransformer"
How to fix it?
39.1 kB
xet

Re-translate protenix_base_default_v1.0.0 under jax 0.10 13 days ago
protenix_mini_default_v0.5.0.eqx

536 MB
xet

Upload folder using huggingface_hub 3 months ago
protenix_mini_default_v0.5.0.skeleton.pkl
Detected Pickle imports (37)
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.MSABlock",
- "protenix.protenij.Protenix",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.backend.relu",
- "protenix.protenij.DistogramHead",
- "protenix.backend.LayerNorm",
- "protenix.protenij.Attention",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.protenij.TriangleAttention",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionTransformerBlock",
- "numpy.dtype",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.AtomAttentionDecoder",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.Sequential",
- "protenix.protenij.ProtenixAttention",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.FourierEmbedding",
- "protenix.backend.Identity",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.ConfidenceHead",
- "protenix.backend.Linear",
- "jax.ShapeDtypeStruct",
- "protenix.backend.sigmoid",
- "protenix.protenij.MSAModule",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.Transition",
- "protenix.protenij.Dropout",
- "protenix.protenij.DiffusionTransformer"
How to fix it?
34.2 kB
xet

Re-translate protenix_mini_default_v0.5.0 under jax 0.10 13 days ago
protenix_tiny_default_v0.5.0.eqx

438 MB
xet

Upload folder using huggingface_hub 3 months ago
protenix_tiny_default_v0.5.0.skeleton.pkl
Detected Pickle imports (37)
- "protenix.protenij.DiffusionTransformer",
- "protenix.protenij.AdaptiveLayerNorm",
- "protenix.protenij.PairformerBlock",
- "protenix.protenij.InputFeatureEmbedder",
- "protenix.protenij.AttentionPairBias",
- "protenix.protenij.TemplateEmbedder",
- "protenix.protenij.TriangleAttention",
- "protenix.backend.Sequential",
- "protenix.protenij.Transition",
- "protenix.protenij.DistogramHead",
- "protenix.protenij.AtomAttentionDecoder",
- "numpy.dtype",
- "protenix.protenij.RelativePositionEncoding",
- "protenix.backend.relu",
- "protenix.protenij.AtomAttentionEncoder",
- "protenix.backend.LayerNorm",
- "jax.ShapeDtypeStruct",
- "protenix.protenij.DiffusionConditioning",
- "protenix.protenij.DiffusionTransformerBlock",
- "protenix.protenij.OuterProductMean",
- "protenix.protenij.TriangleMultiplication",
- "protenix.protenij.ProtenixAttention",
- "protenix.backend.sigmoid",
- "protenix.protenij.InferenceNoiseScheduler",
- "protenix.backend.Linear",
- "protenix.protenij.MSAModule",
- "protenix.protenij.FourierEmbedding",
- "protenix.protenij.ConfidenceHead",
- "protenix.protenij.Dropout",
- "protenix.protenij.Pairformer",
- "protenix.protenij.AtomTransformer",
- "protenix.protenij.Protenix",
- "protenix.protenij.ConditionedTransitionBlock",
- "protenix.protenij.DiffusionModel",
- "protenix.protenij.Attention",
- "protenix.protenij.MSABlock",
- "protenix.backend.Identity"
How to fix it?
34.1 kB
xet

Re-translate protenix_tiny_default_v0.5.0 under jax 0.10 13 days ago

Detected Pickle imports (4)

Detected Pickle imports (3)

Detected Pickle imports (40)

Detected Pickle imports (40)

Detected Pickle imports (40)

Detected Pickle imports (37)

Detected Pickle imports (37)