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Jun 3

Adapting Pre-Trained Vision Models for Novel Instance Detection and Segmentation

Novel Instance Detection and Segmentation (NIDS) aims at detecting and segmenting novel object instances given a few examples of each instance. We propose a unified, simple, yet effective framework (NIDS-Net) comprising object proposal generation, embedding creation for both instance templates and proposal regions, and embedding matching for instance label assignment. Leveraging recent advancements in large vision methods, we utilize Grounding DINO and Segment Anything Model (SAM) to obtain object proposals with accurate bounding boxes and masks. Central to our approach is the generation of high-quality instance embeddings. We utilized foreground feature averages of patch embeddings from the DINOv2 ViT backbone, followed by refinement through a weight adapter mechanism that we introduce. We show experimentally that our weight adapter can adjust the embeddings locally within their feature space and effectively limit overfitting in the few-shot setting. Furthermore, the weight adapter optimizes weights to enhance the distinctiveness of instance embeddings during similarity computation. This methodology enables a straightforward matching strategy that results in significant performance gains. Our framework surpasses current state-of-the-art methods, demonstrating notable improvements in four detection datasets. In the segmentation tasks on seven core datasets of the BOP challenge, our method outperforms the leading published RGB methods and remains competitive with the best RGB-D method. We have also verified our method using real-world images from a Fetch robot and a RealSense camera. Project Page: https://irvlutd.github.io/NIDSNet/

  • 5 authors
·
May 28, 2024

Exposing flaws of generative model evaluation metrics and their unfair treatment of diffusion models

We systematically study a wide variety of image-based generative models spanning semantically-diverse datasets to understand and improve the feature extractors and metrics used to evaluate them. Using best practices in psychophysics, we measure human perception of image realism for generated samples by conducting the largest experiment evaluating generative models to date, and find that no existing metric strongly correlates with human evaluations. Comparing to 16 modern metrics for evaluating the overall performance, fidelity, diversity, and memorization of generative models, we find that the state-of-the-art perceptual realism of diffusion models as judged by humans is not reflected in commonly reported metrics such as FID. This discrepancy is not explained by diversity in generated samples, though one cause is over-reliance on Inception-V3. We address these flaws through a study of alternative self-supervised feature extractors, find that the semantic information encoded by individual networks strongly depends on their training procedure, and show that DINOv2-ViT-L/14 allows for much richer evaluation of generative models. Next, we investigate data memorization, and find that generative models do memorize training examples on simple, smaller datasets like CIFAR10, but not necessarily on more complex datasets like ImageNet. However, our experiments show that current metrics do not properly detect memorization; none in the literature is able to separate memorization from other phenomena such as underfitting or mode shrinkage. To facilitate further development of generative models and their evaluation we release all generated image datasets, human evaluation data, and a modular library to compute 16 common metrics for 8 different encoders at https://github.com/layer6ai-labs/dgm-eval.

Layer6 Layer 6 AI
·
Jun 7, 2023

STRADAViT: Towards a Foundational Model for Radio Astronomy through Self-Supervised Transfer

Next-generation radio astronomy surveys are delivering millions of resolved sources, but robust and scalable morphology analysis remains difficult across heterogeneous telescopes and imaging pipelines. We present STRADAViT, a self-supervised Vision Transformer continued-pretraining framework for learning transferable encoders from radio astronomy imagery. The framework combines mixed-survey data curation, radio astronomy-aware training-view generation, and a ViT-MAE-initialized encoder family with optional register tokens, and supports reconstruction-only, contrastive-only, and two-stage branches. Our pretraining dataset comprises radio astronomy cutouts drawn from four complementary sources: MeerKAT, ASKAP, LOFAR/LoTSS, and SKA SDC1 simulated data. We evaluate transfer with linear probing and fine-tuning on three morphology benchmarks spanning binary and multi-class settings: MiraBest, LoTSS DR2, and Radio Galaxy Zoo. Relative to the ViT-MAE initialization used for continued pretraining, the best two-stage models improve Macro-F1 in all reported linear-probe settings and in two of three fine-tuning settings, with the largest gain on RGZ DR1. Relative to DINOv2, gains are selective: the best two-stage models achieve higher mean Macro-F1 than the strongest DINOv2 baseline on LoTSS DR2 and RGZ DR1 under linear probing, and on MiraBest and RGZ DR1 under fine-tuning. A targeted DINOv2 initialization ablation further indicates that the adaptation recipe is not specific to the ViT-MAE starting point. The ViT-MAE-based STRADAViT checkpoint is retained as the released checkpoint because it combines competitive transfer with lower token count and downstream cost than the DINOv2-based alternative.

  • 5 authors
·
Apr 6

Rethink MAE with Linear Time-Invariant Dynamics

Standard representation probing for visual models relies on mathematically permutation-invariant operations like Global Average Pooling (GAP) or CLS tokens, treating patch representations as an unstructured bag-of-words. We challenge this paradigm by demonstrating that token order is a critical, exploitable dimension in frozen visual representations (e.g., MAE, BEiT, DINOv2, and ViT as CLS-ablation extreme). We propose SSMProbe, a probing framework driven by a State Space Model (SSM). Operating as discrete Linear Time-Invariant (LTI) dynamical systems, SSMs act as permutation-sensitive probes where sequence order strictly dictates the final state due to inherent memory decay. Formulating token ordering as an information scheduling problem, we compare fixed scan heuristics against a differentiable soft permutation (Sinkhorn-based) learned from downstream supervision. Evaluations on standard and fine-grained classification benchmarks reveal a striking order gap: while fixed scans fail dramatically on highly localized patch features, our learned soft permutation successfully extracts highly competitive performance from otherwise heavily localized patch sequences. We find that pre-training objectives fundamentally shape token structure: DINOv2 concentrates global semantics in optimized CLS tokens leaving patches hyperspecialized, pure MAE preserves distributed representations with heterogeneous patch informativeness, and ViT represents a supervised CLS-dominated extreme. BEiT occupies middle ground. This heterogeneity is order-dependent -- meaning the SSM probe's performance depends critically on which tokens are placed at which temporal positions -- and is not merely a topological property of the spatial grid. SSMProbe's learned routing effectively discovers and exploits this heterogeneity, offering a powerful new diagnostic lens for visual representation analysis.

  • 1 authors
·
Apr 28

Towards General Purpose Vision Foundation Models for Medical Image Analysis: An Experimental Study of DINOv2 on Radiology Benchmarks

The integration of deep learning systems into the medical domain has been hindered by the resource-intensive process of data annotation and the inability of these systems to generalize to different data distributions. Foundation models, which are models pre-trained on large datasets, have emerged as a solution to reduce reliance on annotated data and enhance model generalizability and robustness. DINOv2, an open-source foundation model pre-trained with self-supervised learning on 142 million curated natural images, excels in extracting general-purpose visual representations, exhibiting promising capabilities across various vision tasks. Nevertheless, a critical question remains unanswered regarding DINOv2's adaptability to radiological imaging, and the clarity on whether its features are sufficiently general to benefit radiology image analysis is yet to be established. Therefore, this study comprehensively evaluates DINOv2 for radiology, conducting over 100 experiments across diverse modalities (X-ray, CT, and MRI). Tasks include disease classification and organ segmentation on both 2D and 3D images, evaluated under different settings like kNN, few-shot learning, linear-probing, end-to-end fine-tuning, and parameter-efficient fine-tuning, to measure the effectiveness and generalizability of the DINOv2 feature embeddings. Comparative analyses with established medical image analysis models, U-Net and TransUnet for segmentation, and CNN and ViT models pre-trained via supervised, weakly supervised, and self-supervised learning for classification, reveal DINOv2's superior performance in segmentation tasks and competitive results in disease classification. The findings contribute insights to potential avenues for optimizing pre-training strategies for medical imaging and enhancing the broader understanding of DINOv2's role in bridging the gap between natural and radiological image analysis.

  • 6 authors
·
Dec 4, 2023

ExPLoRA: Parameter-Efficient Extended Pre-Training to Adapt Vision Transformers under Domain Shifts

Parameter-efficient fine-tuning (PEFT) techniques such as low-rank adaptation (LoRA) can effectively adapt large pre-trained foundation models to downstream tasks using only a small fraction (0.1%-10%) of the original trainable weights. An under-explored question of PEFT is in extending the pre-training phase without supervised labels; that is, can we adapt a pre-trained foundation model to a new domain via efficient self-supervised pre-training on this domain? In this work, we introduce ExPLoRA, a highly effective technique to improve transfer learning of pre-trained vision transformers (ViTs) under domain shifts. Initializing a ViT with pre-trained weights on large, natural-image datasets such as from DinoV2 or MAE, ExPLoRA continues the unsupervised pre-training objective on a new domain, unfreezing 1-2 pre-trained ViT blocks and tuning all other layers with LoRA. We then fine-tune the resulting model only with LoRA on this new domain for supervised learning. Our experiments demonstrate state-of-the-art results on satellite imagery, even outperforming fully pre-training and fine-tuning ViTs. Using the DinoV2 training objective, we demonstrate up to 8% improvement in linear probing top-1 accuracy on downstream tasks while using <10% of the number of parameters that are used in prior fully-tuned state-of-the art approaches. Our ablation studies confirm the efficacy of our approach over other baselines such as PEFT. Code is available on the project website: https://samar-khanna.github.io/ExPLoRA/

  • 4 authors
·
Jun 16, 2024

DReX: Pure Vision Fusion of Self-Supervised and Convolutional Representations for Image Complexity Prediction

Visual complexity prediction is a fundamental problem in computer vision with applications in image compression, retrieval, and classification. Understanding what makes humans perceive an image as complex is also a long-standing question in cognitive science. Recent approaches have leveraged multimodal models that combine visual and linguistic representations, but it remains unclear whether language information is necessary for this task. We propose DReX (DINO-ResNet Fusion), a vision-only model that fuses self-supervised and convolutional representations through a learnable attention mechanism to predict image complexity. Our architecture integrates multi-scale hierarchical features from ResNet-50 with semantically rich representations from DINOv3 ViT-S/16, enabling the model to capture both low-level texture patterns and high-level semantic structure. DReX achieves state-of-the-art performance on the IC9600 benchmark (Pearson r = 0.9581), surpassing previous methods--including those trained on multimodal image-text data--while using approximately 21.5x fewer learnable parameters. Furthermore, DReX generalizes robustly across multiple datasets and metrics, achieving superior results on Pearson and Spearman correlation, Root Mean Square Error (RMSE), and Mean Absolute Error (MAE). Ablation and attention analyses confirm that DReX leverages complementary cues from both backbones, with the DINOv3 [CLS] token enhancing sensitivity to visual complexity. Our findings suggest that visual features alone can be sufficient for human-aligned complexity prediction and that, when properly fused, self-supervised transformers and supervised deep convolutional neural networks offer complementary and synergistic benefits for this task.

  • 4 authors
·
Nov 20, 2025

Fusion Complexity Inversion: Why Simpler Cross View Modules Outperform SSMs and Cross View Attention Transformers for Pasture Biomass Regression

Accurate estimation of pasture biomass from agricultural imagery is critical for sustainable livestock management, yet existing methods are limited by the small, imbalanced, and sparsely annotated datasets typical of real world monitoring. In this study, adaptation of vision foundation models to agricultural regression is systematically evaluated on the CSIRO Pasture Biomass benchmark, a 357 image dual view dataset with laboratory validated, component wise ground truth for five biomass targets, through 17 configurations spanning four backbones (EfficientNet-B3 to DINOv3-ViT-L), five cross view fusion mechanisms, and a 4x2 metadata factorial. A counterintuitive principle, termed "fusion complexity inversion", is uncovered: on scarce agricultural data, a two layer gated depthwise convolution (R^2 = 0.903) outperforms cross view attention transformers (0.833), bidirectional SSMs (0.819), and full Mamba (0.793, below the no fusion baseline). Backbone pretraining scale is found to monotonically dominate all architectural choices, with the DINOv2 -> DINOv3 upgrade alone yielding +5.0 R^2 points. Training only metadata (species, state, and NDVI) is shown to create a universal ceiling at R^2 ~ 0.829, collapsing an 8.4 point fusion spread to 0.1 points. Actionable guidelines for sparse agricultural benchmarks are established: backbone quality should be prioritized over fusion complexity, local modules preferred over global alternatives, and features unavailable at inference excluded.

  • 1 authors
·
Apr 22

Does DINOv3 Set a New Medical Vision Standard?

The advent of large-scale vision foundation models, pre-trained on diverse natural images, has marked a paradigm shift in computer vision. However, how the frontier vision foundation models' efficacies transfer to specialized domains remains such as medical imaging remains an open question. This report investigates whether DINOv3, a state-of-the-art self-supervised vision transformer (ViT) that features strong capability in dense prediction tasks, can directly serve as a powerful, unified encoder for medical vision tasks without domain-specific pre-training. To answer this, we benchmark DINOv3 across common medical vision tasks, including 2D/3D classification and segmentation on a wide range of medical imaging modalities. We systematically analyze its scalability by varying model sizes and input image resolutions. Our findings reveal that DINOv3 shows impressive performance and establishes a formidable new baseline. Remarkably, it can even outperform medical-specific foundation models like BiomedCLIP and CT-Net on several tasks, despite being trained solely on natural images. However, we identify clear limitations: The model's features degrade in scenarios requiring deep domain specialization, such as in Whole-Slide Pathological Images (WSIs), Electron Microscopy (EM), and Positron Emission Tomography (PET). Furthermore, we observe that DINOv3 does not consistently obey scaling law in the medical domain; performance does not reliably increase with larger models or finer feature resolutions, showing diverse scaling behaviors across tasks. Ultimately, our work establishes DINOv3 as a strong baseline, whose powerful visual features can serve as a robust prior for multiple complex medical tasks. This opens promising future directions, such as leveraging its features to enforce multiview consistency in 3D reconstruction.

  • 19 authors
·
Sep 8, 2025 3

Radiology Report Generation with Layer-Wise Anatomical Attention

Automatic radiology report generation is a promising application of multimodal deep learning, aiming to reduce reporting workload and improve consistency. However, current state-of-the-art (SOTA) systems - such as Multimodal AI for Radiology Applications (MAIRA-2) and Medical Pathways Language Model-Multimodal (MedPaLM-M) - depend on large-scale multimodal training, clinical metadata, and multiple imaging views, making them resource-intensive and inaccessible for most settings. We introduce a compact image-to-text architecture that generates the Findings section of chest X-ray reports from a single frontal image. The model combines a frozen Self-Distillation with No Labels v3 (DINOv3) Vision Transformer (ViT) encoder with a Generative Pre-trained Transformer 2 (GPT-2) decoder enhanced by layer-wise anatomical attention. This mechanism integrates lung and heart segmentation masks through hierarchical Gaussian smoothing, biasing attention toward clinically relevant regions without adding trainable parameters. Evaluated on the official Medical Information Mart for Intensive Care-Chest X-ray (MIMIC-CXR) dataset using Chest Radiograph Expert (CheXpert) and Radiology Graph (RadGraph) metrics, our approach achieved substantial gains: CheXpert Macro-F1 for five key pathologies increased by 168% (0.083 -> 0.238) and Micro-F1 by 146% (0.137 -> 0.337), while broader performance across 14 observations improved by 86% (0.170 -> 0.316). Structural coherence also improved, with RadGraph F1 rising by 9.7%. Despite its small size and purely image-conditioned design, the model demonstrates that decoder-level anatomical guidance improves spatial grounding and enhances coherence in clinically relevant regions. The source code is publicly available at: https://github.com/devMuniz02/UDEM-CXR-Reporting-Thesis-2025.

  • 6 authors
·
Dec 18, 2025

Resolution scaling governs DINOv3 transfer performance in chest radiograph classification

Self-supervised learning (SSL) has advanced visual representation learning, but its value in chest radiography, a high-volume imaging modality with fine-grained findings, remains unclear. Meta's DINOv3 extends earlier SSL models through Gram-anchored self-distillation. Whether these design choices improve transfer learning for chest radiography has not been systematically tested. We benchmarked DINOv3 against DINOv2 and ImageNet initialization across seven datasets (n>814,000). Two representative backbones were evaluated: ViT-B/16 and ConvNeXt-B. Images were analyzed at 224x224, 512x512, and 1024x1024 pixels. We additionally assessed frozen features from a 7B model. The primary outcome was mean AUROC across labels. At 224x224, DINOv3 and DINOv2 achieved comparable performance on adult datasets. Increasing resolution to 512x512 yielded consistent improvements for DINOv3 over both DINOv2 and ImageNet. In contrast, results in pediatric cohort showed no differences across initializations. Across all settings, ConvNeXt-B outperformed ViT-B/16. Models using frozen DINOv3-7B features underperformed relative to fully finetuned 86-89M-parameter backbones, highlighting the importance of domain adaptation. Scaling to 1024x1024 did not further improve accuracy. Resolution-related gains were most evident for boundary-dependent and small focal abnormalities. In chest radiography, higher input resolution is critical for leveraging the benefits of modern self-supervised models. 512x512 pixels represent a practical upper limit where DINOv3-initialized ConvNeXt-B networks provide the strongest performance, while larger inputs offer minimal return on cost. Clinically, these findings support use of finetuned, mid-sized backbones at 512x512 for chest radiograph interpretation, with the greatest gains expected in detecting subtle or boundary-centered lesions relevant to emergency and critical care settings.

  • 6 authors
·
Oct 8, 2025

dinov3.seg: Open-Vocabulary Semantic Segmentation with DINOv3

Open-Vocabulary Semantic Segmentation (OVSS) assigns pixel-level labels from an open set of text-defined categories, demanding reliable generalization to unseen classes at inference. Although modern vision-language models (VLMs) support strong open-vocabulary recognition, their representations learned through global contrastive objectives remain suboptimal for dense prediction, prompting many OVSS methods to depend on limited adaptation or refinement of image-text similarity maps. This, in turn, restricts spatial precision and robustness in complex, cluttered scenes. We introduce dinov3.seg, extending dinov3.txt into a dedicated framework for OVSS. Our contributions are four-fold. First, we design a task-specific architecture tailored to this backbone, systematically adapting established design principles from prior open-vocabulary segmentation work. Second, we jointly leverage text embeddings aligned with both the global [CLS] token and local patch-level visual features from ViT-based encoder, effectively combining semantic discrimination with fine-grained spatial locality. Third, unlike prior approaches that rely primarily on post hoc similarity refinement, we perform early refinement of visual representations prior to image-text interaction, followed by late refinement of the resulting image-text correlation features, enabling more accurate and robust dense predictions in cluttered scenes. Finally, we propose a high-resolution local-global inference strategy based on sliding-window aggregation, which preserves spatial detail while maintaining global context. We conduct extensive experiments on five widely adopted OVSS benchmarks to evaluate our approach. The results demonstrate its effectiveness and robustness, consistently outperforming current state-of-the-art methods.

  • 3 authors
·
Mar 18

Test-Time Adaptation for Height Completion via Self-Supervised ViT Features and Monocular Foundation Models

Accurate digital surface models (DSMs) are essential for many geospatial applications, including urban monitoring, environmental analyses, infrastructure management, and change detection. However, large-scale DSMs frequently contain incomplete or outdated regions due to acquisition limitations, reconstruction artifacts, or changes in the built environment. Traditional height completion approaches primarily rely on spatial interpolation or which assume spatial continuity and therefore fail when objects are missing. Recent learning-based approaches improve reconstruction quality but typically require supervised training on sensor-specific datasets, limiting their generalization across domains and sensing conditions. We propose Prior2DSM, a training-free framework for metric DSM completion that operates entirely at test time by leveraging foundation models. Unlike previous height completion approaches that require task-specific training, the proposed method combines self-supervised Vision Transformer (ViT) features from DINOv3 with monocular depth foundation models to propagate metric information from incomplete height priors through semantic feature-space correspondence. Test-time adaptation (TTA) is performed using parameter-efficient low-rank adaptation (LoRA) together with a lightweight multilayer perceptron (MLP), which predicts spatially varying scale and shift parameters to convert relative depth estimates into metric heights. Experiments demonstrate consistent improvements over interpolation based methods, prior-based rescaling height approaches, and state-of-the-art monocular depth estimation models. Prior2DSM reduces reconstruction error while preserving structural fidelity, achieving up to a 46% reduction in RMSE compared to linear fitting of MDE, and further enables DSM updating and coupled RGB-DSM generation.

  • 3 authors
·
Apr 1

Toward Stable Semi-Supervised Remote Sensing Segmentation via Co-Guidance and Co-Fusion

Semi-supervised remote sensing (RS) image semantic segmentation offers a promising solution to alleviate the burden of exhaustive annotation, yet it fundamentally struggles with pseudo-label drift, a phenomenon where confirmation bias leads to the accumulation of errors during training. In this work, we propose Co2S, a stable semi-supervised RS segmentation framework that synergistically fuses priors from vision-language models and self-supervised models. Specifically, we construct a heterogeneous dual-student architecture comprising two distinct ViT-based vision foundation models initialized with pretrained CLIP and DINOv3 to mitigate error accumulation and pseudo-label drift. To effectively incorporate these distinct priors, an explicit-implicit semantic co-guidance mechanism is introduced that utilizes text embeddings and learnable queries to provide explicit and implicit class-level guidance, respectively, thereby jointly enhancing semantic consistency. Furthermore, a global-local feature collaborative fusion strategy is developed to effectively fuse the global contextual information captured by CLIP with the local details produced by DINOv3, enabling the model to generate highly precise segmentation results. Extensive experiments on six popular datasets demonstrate the superiority of the proposed method, which consistently achieves leading performance across various partition protocols and diverse scenarios. Project page is available at https://xavierjiezou.github.io/Co2S/.

  • 10 authors
·
Dec 28, 2025 4

Cross-Domain Generalization Limits of Vision Foundation Models in Facial Deepfake Detection

The rapid evolution of generative models has enabled the creation of hyper-realistic facial deepfakes, exposing a critical vulnerability in modern digital forensics: the inability of detectors to generalize to unseen manipulation techniques. Traditional networks suffer from representation collapse, overfitting to localized artifact fingerprints of specific training generators. This work investigates whether modern Vision Foundation Models can serve as generalizable, out-of-the-box feature extractors capable of tracking forensic anomalies across entirely unseen generative manifolds. We conduct a systematic cross-domain evaluation comparing three foundational learning paradigms: fully supervised macro-semantic features (RoPE-ViT), pure self-supervised geometric features (DINOv3), and multi-teacher agglomerative representations (NVIDIA C-RADIOv4-H). By deploying frozen backbones subjected to downstream linear probing, we map the performance limitations of these architectures on the challenging DF40 benchmark. Our empirical findings expose the intrinsic trade-offs between pre-training paradigms and parameter scale, proving that while foundation models retain high discriminative capabilities for entire face synthesis, localized face editing techniques expose fundamental boundaries in linear probe evaluation structures. Source code and model weights are available in http://github.com/mribrahim/deepfake

  • 1 authors
·
May 23

Denoising Vision Transformers

We delve into a nuanced but significant challenge inherent to Vision Transformers (ViTs): feature maps of these models exhibit grid-like artifacts, which detrimentally hurt the performance of ViTs in downstream tasks. Our investigations trace this fundamental issue down to the positional embeddings at the input stage. To address this, we propose a novel noise model, which is universally applicable to all ViTs. Specifically, the noise model dissects ViT outputs into three components: a semantics term free from noise artifacts and two artifact-related terms that are conditioned on pixel locations. Such a decomposition is achieved by enforcing cross-view feature consistency with neural fields in a per-image basis. This per-image optimization process extracts artifact-free features from raw ViT outputs, providing clean features for offline applications. Expanding the scope of our solution to support online functionality, we introduce a learnable denoiser to predict artifact-free features directly from unprocessed ViT outputs, which shows remarkable generalization capabilities to novel data without the need for per-image optimization. Our two-stage approach, termed Denoising Vision Transformers (DVT), does not require re-training existing pre-trained ViTs and is immediately applicable to any Transformer-based architecture. We evaluate our method on a variety of representative ViTs (DINO, MAE, DeiT-III, EVA02, CLIP, DINOv2, DINOv2-reg). Extensive evaluations demonstrate that our DVT consistently and significantly improves existing state-of-the-art general-purpose models in semantic and geometric tasks across multiple datasets (e.g., +3.84 mIoU). We hope our study will encourage a re-evaluation of ViT design, especially regarding the naive use of positional embeddings.

  • 6 authors
·
Jan 5, 2024 2