Daily Papers

A central task in virtual cell modeling is predicting single-cell transcriptional responses to unseen genetic perturbations and drug combinations, and biological networks provide valuable priors on gene relationships. Existing graph-based models commonly use the same network to structure gene representations and mediate intergene interactions, thereby implicitly treating stable associations as perturbation-response pathways. Gene Ontology and control-derived coexpression networks encode relatively stable relationships rather than intervention-specific response directions or magnitudes. We therefore propose GeneGeoFlow, which conditions a control-anchored residual flow on gene-wise geometry derived from biological networks to learn intervention-specific transcriptional responses. GeneGeoFlow derives multi-scale spectral coordinates from Gene Ontology and control-derived coexpression networks. A perturbation-conditioned, gene-wise gating module selects relevant structural scales and network sources, yielding intervention-specific gene geometry. The resulting geometry conditions a control-anchored residual flow without explicitly propagating target-derived signals along the graph. Condition-wise optimal transport couples unpaired control and perturbed populations for training, while a Delta-correlation objective aligns the predicted and observed condition-level expression-shift directions. GeneGeoFlow achieves Pearson Delta scores of 0.8979 on the Norman additive benchmark and 0.9088 on five held-out drug combinations in the fixed ComboSciPlex test split. These results support perturbation-conditioned gene geometry as an effective structural prior for intervention-specific response prediction, without conflating stable gene relationships with response propagation.

Motivated by recent observations of symmtry broken phases in lightly-doped multilayer graphene, we investigate magnetic phase transitions in a generalized electron gas model with four-component electron spin. This model simplifies the problem with a parabolic dispersion band, abstracting away the details of the graphene band structure to focus solely on the effects of the Coulomb interaction. We report four findings: 1) In the Hartree-Fock approximation, we observe that the paramagnetic state undergoes a sequence of density-driven, first-order phase transitions, progressively depopulating electrons from each spin component until achieving complete polarization within a very narrow density window where 1.2<r_s<2 (r_s being the electron gas parameter). 2) Further incorporating the correlation energy via the Bohm-Pines random-phase approximation shows that the cascade of transitions obtained within Hartree-Fock approximation is replaced by a single ferromagnetic phase transition at r_s = 6.12. 3) The disappearance of cascade is due to the correlation energy difference between the four-component paramagnetic state and symmetry-broken phases, which is nearly an order of magnitude more negative than the corresponding Hartree-Fock energy difference for 1.2 < r_s < 2. 4) The transition from the paramagnetic state to the fully polarized state at r_s=6.12 is governed by the balance between exchange and correlation energies, a competition that cannot be captured by mean-field approximations to models featuring effective (density-dependent) delta-function interactions, such as the Stoner model. We use the insights from our model to comment on the phase diagram of multilayer graphene electron gas.

Accurate segmentation of cardiac chambers in echocardiography sequences is crucial for the quantitative analysis of cardiac function, aiding in clinical diagnosis and treatment. The imaging noise, artifacts, and the deformation and motion of the heart pose challenges to segmentation algorithms. While existing methods based on convolutional neural networks, Transformers, and space-time memory networks have improved segmentation accuracy, they often struggle with the trade-off between capturing long-range spatiotemporal dependencies and maintaining computational efficiency with fine-grained feature representation. In this paper, we introduce GDKVM, a novel architecture for echocardiography video segmentation. The model employs Linear Key-Value Association (LKVA) to effectively model inter-frame correlations, and introduces Gated Delta Rule (GDR) to efficiently store intermediate memory states. Key-Pixel Feature Fusion (KPFF) module is designed to integrate local and global features at multiple scales, enhancing robustness against boundary blurring and noise interference. We validated GDKVM on two mainstream echocardiography video datasets (CAMUS and EchoNet-Dynamic) and compared it with various state-of-the-art methods. Experimental results show that GDKVM outperforms existing approaches in terms of segmentation accuracy and robustness, while ensuring real-time performance. Code is available at https://github.com/wangrui2025/GDKVM.

The classification of Intangible Cultural Heritage (ICH) images in the Mekong Delta poses unique challenges due to limited annotated data, high visual similarity among classes, and domain heterogeneity. In such low-resource settings, conventional deep learning models often suffer from high variance or overfit to spurious correlations, leading to poor generalization. To address these limitations, we propose a robust framework that integrates the hybrid CoAtNet architecture with model soups, a lightweight weight-space ensembling technique that averages checkpoints from a single training trajectory without increasing inference cost. CoAtNet captures both local and global patterns through stage-wise fusion of convolution and self-attention. We apply two ensembling strategies - greedy and uniform soup - to selectively combine diverse checkpoints into a final model. Beyond performance improvements, we analyze the ensembling effect through the lens of bias-variance decomposition. Our findings show that model soups reduces variance by stabilizing predictions across diverse model snapshots, while introducing minimal additional bias. Furthermore, using cross-entropy-based distance metrics and Multidimensional Scaling (MDS), we show that model soups selects geometrically diverse checkpoints, unlike Soft Voting, which blends redundant models centered in output space. Evaluated on the ICH-17 dataset (7,406 images across 17 classes), our approach achieves state-of-the-art results with 72.36% top-1 accuracy and 69.28% macro F1-score, outperforming strong baselines including ResNet-50, DenseNet-121, and ViT. These results underscore that diversity-aware checkpoint averaging provides a principled and efficient way to reduce variance and enhance generalization in culturally rich, data-scarce classification tasks.

This paper studies the scale and redshift variation of density and velocity distributions in self-gravitating collisionless dark matter flow by a halo-based non-projection approach. All particles are divided into halo and out-of-halo particles for redshift variation of distributions. Without projecting particle fields onto a structured grid, the scale variation is analyzed by identifying all particle pairs on different scales r. We demonstrate that: i) Delaunay tessellation can be used to reconstruct the density field. The density correlation, spectrum, and dispersion functions were obtained, modeled, and compared with the N-body simulation; ii) the velocity distributions are symmetric on both small and large scales and are non-symmetric with a negative skewness on intermediate scales due to the inverse energy cascade at a constant rate varepsilon_u; iii) On small scales, the even order moments of pairwise velocity Delta u_L follow a two-thirds law (-varepsilon_ur)^{2/3}, while the odd order moments follow a linear scaling langle(Delta u_L)^{2n+1}rangle=(2n+1)langle(Delta u_L)^{2n}ranglelangleDelta u_Lrangler; iv) The scale variation of the velocity distributions was studied for longitudinal velocities u_L or u_L^{'}, pairwise velocity (velocity difference) Delta u_L=u_L^{'}-u_L and velocity sum Sigma u_L=u^{'}_L+u_L. Fully developed velocity fields are never Gaussian on any scale, despite that they can initially be Gaussian; v) On small scales, u_L and Sigma u_L can be modeled by a X distribution to maximize the system entropy; vi) On large scales, Delta u_L and Sigma u_L can be modeled by a logistic or a X distribution; vii) the redshift variation of the velocity distributions follows the evolution of the X distribution involving a shape parameter alpha(z) decreasing with time.

We present synthetic light curves and spectra from three-dimensional (3D) Monte Carlo radiative transfer simulations based on a 3D core-collapse supernova explosion model of an ultra-stripped 3.5,M_{odot} progenitor. Our calculations predict a fast and faint transient with Delta m_{15} sim 1- 2,mag and peak bolometric luminosity between -15.3,mag and -16.4,mag. Due to a large-scale unipolar asymmetry in the distribution of ^{56}Ni, there is a pronounced viewing-angle dependence with about 1,mag difference between the directions of highest and lowest luminosity. The predicted spectra for this rare class of explosions do not yet match any observed counterpart. They are dominated by prominent Mg~II lines, but features from O, C, Si, and Ca are also found. In particular, the O~I line at 7{774} appears as a blended feature together with Mg~II emission. Our model is not only faster and fainter than the observed Ib/c supernova population, but also shows a correlation between higher peak luminosity and larger Delta m_{15} that is not present in observational samples. A possible explanation is that the unusually small ejecta mass of our model accentuates the viewing-angle dependence of the photometry. We suggest that the viewing-angle dependence of the photometry may be used to constrain asymmetries in explosion models of more typical stripped-envelope supernova progenitors in future.

We report a quasi-one-dimensional S = 1 spin chain compound BaNiTe2O7. This magnetic system has been investigated by magnetic susceptibility, specific heat, and neutron powder diffraction. These results indicate that BaNiTe2O7 develops a short-range magnetic correlation around T ~ 22 K. With further cooling, an antiferromagnetic phase transition is observed at TN ~ 5.4 K. Neutron powder diffraction revealed antiferromagnetic noncollinear order with a commensurate propagation vector k = (1/2, 1, 0). The refined magnetic moment size of Ni2+ at 1.5 K is 1.84{\mu}B, and its noncollinear spin texture is confirmed by first-principles calculations. Inelastic neutron-scattering results and density functional theory calculations confirmed the quasi-one-dimensional nature of the spin systems.

To overcome the limitations of manual administrative coding in geriatric Cardiovascular Risk Management, this study introduces an automated classification framework leveraging unstructured Electronic Health Records (EHRs). Using a dataset of 3,482 patients, we benchmarked three distinct modeling paradigms on longitudinal Dutch clinical narratives: classical machine learning baselines, specialized deep learning architectures optimized for large-context sequences, and general-purpose generative Large Language Models (LLMs) in a zero-shot setting. Additionally, we evaluated a late fusion strategy to integrate unstructured text with structured medication embeddings and anthropometric data. Our analysis reveals that the custom Transformer architecture outperforms both traditional methods and generative llms, achieving the highest F1-scores and Matthews Correlation Coefficients. These findings underscore the critical role of specialized hierarchical attention mechanisms in capturing long-range dependencies within medical texts, presenting a robust, automated alternative to manual workflows for clinical risk stratification.

Activation steering presupposes that task-relevant behaviors correspond to linear directions in activation space -- directions that should both steer the model and be readable along the unembedding. Function vectors (FVs), extracted as mean differences across ICL demonstrations, are the canonical test case; the prediction: steering and decoding succeed or fail together. Across 12 tasks, 6 models from 3 families, and 4,032 directed cross-template pairs, we find the opposite. FV steering routinely succeeds where the logit lens cannot decode the correct answer at any intermediate layer, while the converse -- decodable without steerable -- is nearly empty (3 of 72). The gap is not representational dialect. A diagonal tuned lens closes 1 of 14 steerable-not-decodable cases; a 2-layer MLP probe with a Hewitt \& Liang control closes 5 of 10 via nonlinearly encoded structure but leaves 5 invisible to every decoder tested. Even at > 0.90 steering accuracy, projecting the FV through the unembedding yields incoherent token distributions: FVs encode computational instructions, not answer directions. A model-family asymmetry sharpens the picture. Mistral FVs rewrite intermediate representations, while Llama and Gemma FVs steer the final output without leaving a logit-lens-visible trace, corroborated by three signals (post-steering deltas, activation-patching recovery, FV norm-transfer correlations). A previously reported negative cosine-transfer correlation dissolves at scale, adding at most ΔR^2 = 0.011 beyond task identity. These results decompose the linear representation hypothesis into linear decodability and linear steerability and show they come apart opposite to intuition, with implications for safety monitoring: vocabulary-projection tools are blind to FV-style interventions on widely deployed model families.

The attention mechanism of a transformer has a quadratic complexity, leading to high inference costs and latency for long sequences. However, attention matrices are mostly sparse, which implies that many entries may be omitted from computation for efficient inference. Sparse attention inference methods aim to reduce this computational burden; however, they also come with a troublesome performance degradation. We discover that one reason for this degradation is that the sparse calculation induces a distributional shift in the attention outputs. The distributional shift causes decoding-time queries to fail to align well with the appropriate keys from the prefill stage, leading to a drop in performance. We propose a simple, novel, and effective procedure for correcting this distributional shift, bringing the distribution of sparse attention outputs closer to that of quadratic attention. Our method can be applied on top of any sparse attention method, and results in an average 36%pt performance increase, recovering 88% of quadratic attention accuracy on the 131K RULER benchmark when applied on top of sliding window attention with sink tokens while only adding a small overhead. Our method can maintain approximately 98.5% sparsity over full quadratic attention, making our model 32 times faster than Flash Attention 2 when processing 1M token prefills.

Prompt-specialized multi-agent systems enable multiple agents to share a model while performing complementary roles to solve complex tasks. However, agent-specific prefixes change the KV cache generated for the same shared context, causing each agent to repeatedly prefill the growing context and construct a separate cache with high computation and memory overhead. Selective recomputation reduces this redundancy but still retains substantial model execution, while existing delta correction methods either support only recurring context relations or maintain memory-intensive online correction states for dynamically changing context. For first seen shared context, these methods also construct a reference cache outside the agent workflow, and an approximate correction at the first agent affects the outputs passed to subsequent agents. We present KVCMAS, an online KV cache correction framework that represents cross-agent cache deviations using compact low-rank states and seamlessly chains corrections along the agent workflow without an additional reference prefill. This design supports dynamically changing shared context while preserving an exact first-agent cache. Across multiple language and vision-language workloads, KVCMAS matches or improves the accuracy of prior KV cache sharing methods while achieving the lowest TTFT under highly concurrent serving. Under controlled serving traces, it provides a 2.0x TTFT speedup over inference without KV cache sharing and reduces peak GPU memory by up to 3.7x relative to a prior KV cache correction method. These results establish KVCMAS as an accurate and scalable KV cache sharing approach for prompt-specialized multi-agent serving.

Delta-rule linear attention improves recurrent memory updates by correcting what is already stored at the current write address before writing new content. However, the active correction is still anchored to that same write address. As a result, stale information stored at a different address cannot be actively removed before new content is written elsewhere. We propose Erase-then-Delta Attention (EDA), a memory update rule that decouples where to erase from where to write. The key insight is that recurrent memory models should not only correct the current write, but also selectively suppress outdated memory at an independently chosen address. Concretely, our method first applies a targeted erase step along a learned erase direction, and then performs the standard delta-style corrective write along the current write direction. This preserves the corrective behavior of delta-rule updates while expanding their memory-management capacity. Language-model pretraining experiments across dense 2.5B and MoE 25B-A2.8B model families show that EDA performs best in both settings. The gain persists after 80B-token long-context midtraining of the MoE models, where EDA also performs best in long-context evaluations from 4k to 128k contexts. A compact update analysis and memory-state probes suggest why: EDA keeps the delta-rule corrective write intact while allocating an additional cleanup path most strongly when passive decay is weak. These results suggest that recurrent memory models should decide not only what to write, but also what stale information to erase and where.

Most modern optimizers form their momentum as an exponential moving average (EMA) of past gradients, forgetting every direction at one fixed rate. However, the inputs a deep network sees during training can be highly anisotropic, with a few directions queried frequently while most are seen rarely. Preconditioning methods address this anisotropy by wrapping extra processing around this buffer and leave the momentum update itself unchanged. We propose Activation-Keyed Momentum (AK-Momentum), which builds direction-awareness into the momentum update rule. The gradient of a linear layer splits into an input activation that acts as a key and an output-side error that acts as a value. Keying on that activation, AK-Momentum updates the momentum buffer by the canonical delta rule, so each direction is forgotten at a rate set by how often it appears. We prove that it is a valid momentum, that it applies the input-side curvature correction without matrix inversion, and that it clears stale directions faster than EMA under both a fixed and a drifting optimum. It is a drop-in replacement for the momentum buffer of any optimizer, its coefficient transfers across widths under μP, and its extra compute stays between 22.2% and 25.0% of a gated-MLP block's linear cost with no persistent memory. In FineWeb-Edu pretraining, AdamW with AK-Momentum (AK-AdamW) reaches AdamW's validation loss in up to 46.39 pm 4.32% fewer steps at 67M and 22.12 pm 0.80% at 370M over three seeds, and the gain persists at 1B on a Chinchilla-optimal budget. A Muon baseline tuned under the same protocol sits above AK-AdamW at both language-model scales, and the gain holds for SGD, ResNet-18, and ViT-Tiny on CIFAR-10. Training-time diagnostics confirm the predicted mechanism, better gradient tracking and healthier input directions.

Linear RNNs based on the delta-rule enable efficient sequence modeling, but their linear updates with a low-rank correction constrain their expressivity. Prior work has shown that composing two delta-rule transitions in a single recurrent update can model a 2D rotation, but this increases the rank and the cost of the updates compared to a single transition. We show that Kimi Delta Attention (KDA) can realize 2D rotations by combining a single delta-rule transformation with a second reflection supplied by its channel-wise gate. This requires extending the parameter ranges of KDA by combining two existing range extensions: allowing gates in [-1,1] and the delta-rule coefficient β in [0,2]. We call the resulting model Complex KDA (CKDA). It preserves KDA's stability and efficiency, with transitions that remain diagonal-plus-rank-one and non-expansive, while reaching the state-tracking expressivity of DeltaProduct_2. We characterize the expressivity of CKDA and prove that every orthogonal diagonal-plus-rank-one matrix is exactly a CKDA transition matrix. A single CKDA layer can track every finite group isomorphic to a subgroup of SO(3), and many state-tracking results use one fewer layer for CKDA compared to other diagonal-plus-rank-one Linear RNNs. Empirically, combining both extensions yields the strongest length extrapolation among tested KDA range settings on S_3, S_4, and periodic audio continuation. In language modeling, CKDA outperforms Transformers and other linear RNNs, obtains similar results to a KDA baseline, and shows promising scaling behavior. Our code is open source at https://github.com/OpenEuroLLM/ComplexKDA and our models are available at https://huggingface.co/collections/openeurollm/complexkda.

Large language models increasingly need to accumulate and reuse historical information in long-term assistants and agent systems. Simply expanding the context window is costly and often fails to ensure effective context utilization. We propose δ-mem, a lightweight memory mechanism that augments a frozen full-attention backbone with a compact online state of associative memory. δ-mem compresses past information into a fixed-size state matrix updated by delta-rule learning, and uses its readout to generate low-rank corrections to the backbone's attention computation during generation. With only an 8times8 online memory state, δ-mem improves the average score to 1.10times that of the frozen backbone and 1.15times that of the strongest non-δ-mem memory baseline. It achieves larger gains on memory-heavy benchmarks, reaching 1.31times on MemoryAgentBench and 1.20times on LoCoMo, while largely preserving general capabilities. These results show that effective memory can be realized through a compact online state directly coupled with attention computation, without full fine-tuning, backbone replacement, or explicit context extension.

Gaussian Splatting has become a popular technique for various 3D Computer Vision tasks, including novel view synthesis, scene reconstruction, and dynamic scene rendering. However, the challenge of natural-looking object insertion, where the object's appearance seamlessly matches the scene, remains unsolved. In this work, we propose a method, dubbed D3DR, for inserting a 3DGS-parametrized object into 3DGS scenes while correcting its lighting, shadows, and other visual artifacts to ensure consistency, a problem that has not been successfully addressed before. We leverage advances in diffusion models, which, trained on real-world data, implicitly understand correct scene lighting. After inserting the object, we optimize a diffusion-based Delta Denoising Score (DDS)-inspired objective to adjust its 3D Gaussian parameters for proper lighting correction. Utilizing diffusion model personalization techniques to improve optimization quality, our approach ensures seamless object insertion and natural appearance. Finally, we demonstrate the method's effectiveness by comparing it to existing approaches, achieving 0.5 PSNR and 0.15 SSIM improvements in relighting quality.