Daily Papers

Repeatedly sampling short sequence windows from a human pangenome requires an access representation as well as compression. panvram stores each assembly as a reference-relative block archive and pools these archives on a GPU. For 558 haplotype assemblies, the default q4k representation occupies 16.642 GB of persistent pools including the decoded reference; a packed-reference, compact-directory representation occupies 11.634 GB. These quantities are not peak application memory. In the C1 experiment, default and fully compact forms delivered 743,271 and 736,762 windows/s; a separate public Colab run delivered 741,931 and 680,760 windows/s. All are batch API measurements and must not be pooled as repeated trials of an identical environment. Full-decoding checks compared reconstructed FASTA checksums with the manifest. On the CPU, the M6 shuffled-window workload at the same cohort cardinality reported 26 requests/s for AGC and 145,222 requests/s for refrel3 q4k. This comparison concerns one-thread requests of 4 KiB on the recorded warm-cache workload, not all genome-access patterns. AGC provides the smaller incremental archive: 5.40 MB/assembly versus 13.04 MB/assembly for refrel3 q16k, with different exclusions; the size pair is not the same refrel3 configuration as the q4k timing pair. We derive an expected-work expression for fixed independent granules and distinguish it from an empirical median-latency predictor. Cohort-scale counter and DRAM measurements motivate a locality hypothesis, but do not establish a causal per-miss latency or independently reproduce a model-failure verdict. The window-cost verdict at N=558 is published with its harness and raw timings.

LLMs have seen rapid adoption in all domains. They need to be trained on high-end high-performance computing (HPC) infrastructures and ingest massive amounts of input data. Unsurprisingly, at such a large scale, unexpected events (e.g., failures of components, instability of the software, undesirable learning patterns, etc.), are frequent and typically impact the training in a negative fashion. Thus, LLMs need to be checkpointed frequently so that they can be rolled back to a stable state and subsequently fine-tuned. However, given the large sizes of LLMs, a straightforward checkpointing solution that directly writes the model parameters and optimizer state to persistent storage (e.g., a parallel file system), incurs significant I/O overheads. To address this challenge, in this paper we study how to reduce the I/O overheads for enabling fast and scalable checkpointing for LLMs that can be applied at high frequency (up to the granularity of individual iterations) without significant impact on the training process. Specifically, we introduce a lazy asynchronous multi-level approach that takes advantage of the fact that the tensors making up the model and optimizer state shards remain immutable for extended periods of time, which makes it possible to copy their content in the background with minimal interference during the training process. We evaluate our approach at scales of up to 180 GPUs using different model sizes, parallelism settings, and checkpointing frequencies. The results show up to 48times faster checkpointing and 2.2times faster end-to-end training runtime compared with the state-of-art checkpointing approaches.

Numeric format proliferation in machine learning hardware -- FP8 (E4M3 and E5M2), BF16, MXFP4, microscaling block formats, and dozens of research variants -- has outpaced the availability of vendor-neutral, bit-exact reference material. Engineers porting models across accelerators encounter silent divergences that are difficult to diagnose without a shared ruler. This paper describes a catalog of 84 numeric formats spanning 13 families, a suite of six bit-exact conformance packs covering GF16, MXFP4 element, BF16, FP8 E4M3, FP8 E5M2, and E8M0 block scale, and an IEEE P3109 v3.2.0 cross-walk that maps each pack to its corresponding standards-track configured format. Each pack is a self-contained JSON document with a SHA-256 fingerprint, a shared row schema, and an anchor vector that encodes 3.0 -- the identity phi^2 + 1/phi^2 = 3 -- as a cross-pack sanity check. Packs are cross-validated against ml_dtypes 0.5.4 (Google/JAX); any divergence is documented explicitly and interpreted as a spec-permitted interpretation gap rather than hidden. The work is framed as registry filling: it does not propose new formats, make model-accuracy claims, or assert superiority over any vendor's implementation. All artifacts are publicly available at https://github.com/gHashTag/t27 under an open license.

Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for straightforward data retrieval and provide deep, contextual insights into patient care. However, they often suffer from discrepancies due to unintuitive EHR system designs and human errors, posing serious risks to patient safety. To address this, we developed EHRCon, a new dataset and task specifically designed to ensure data consistency between structured tables and unstructured notes in EHRs. EHRCon was crafted in collaboration with healthcare professionals using the MIMIC-III EHR dataset, and includes manual annotations of 3,943 entities across 105 clinical notes checked against database entries for consistency. EHRCon has two versions, one using the original MIMIC-III schema, and another using the OMOP CDM schema, in order to increase its applicability and generalizability. Furthermore, leveraging the capabilities of large language models, we introduce CheckEHR, a novel framework for verifying the consistency between clinical notes and database tables. CheckEHR utilizes an eight-stage process and shows promising results in both few-shot and zero-shot settings. The code is available at https://github.com/dustn1259/EHRCon.

JavaScript Object Notation or JSON is a ubiquitous data exchange format on the Web. Ingesting JSON documents can become a performance bottleneck due to the sheer volume of data. We are thus motivated to make JSON parsing as fast as possible. Despite the maturity of the problem of JSON parsing, we show that substantial speedups are possible. We present the first standard-compliant JSON parser to process gigabytes of data per second on a single core, using commodity processors. We can use a quarter or fewer instructions than a state-of-the-art reference parser like RapidJSON. Unlike other validating parsers, our software (simdjson) makes extensive use of Single Instruction, Multiple Data (SIMD) instructions. To ensure reproducibility, simdjson is freely available as open-source software under a liberal license.

Hash tables are ubiquitous. Properties such as an amortized constant time complexity for insertion and querying as well as a compact memory layout make them versatile associative data structures with manifold applications. The rapidly growing amount of data emerging in many fields motivated the need for accelerated hash tables designed for modern parallel architectures. In this work, we exploit the fast memory interface of modern GPUs together with a parallel hashing scheme tailored to improve global memory access patterns, to design WarpCore -- a versatile library of hash table data structures. Unique device-sided operations allow for building high performance data processing pipelines entirely on the GPU. Our implementation achieves up to 1.6 billion inserts and up to 4.3 billion retrievals per second on a single GV100 GPU thereby outperforming the state-of-the-art solutions cuDPP, SlabHash, and NVIDIA RAPIDS cuDF. This performance advantage becomes even more pronounced for high load factors of over 90%. To overcome the memory limitation of a single GPU, we scale our approach over a dense NVLink topology which gives us close-to-optimal weak scaling on DGX servers. We further show how WarpCore can be used for accelerating a real world bioinformatics application (metagenomic classification) with speedups of over two orders-of-magnitude against state-of-the-art CPU-based solutions. WC is written in C++/CUDA-C and is openly available at https://github.com/sleeepyjack/warpcore.

The era of large astronomical surveys generates massive image catalogs requiring efficient and secure access, particularly during pre-publication periods where data confidentiality and integrity are paramount. While Findable, Accessible, Interoperable, and Reusable (FAIR) principles guide the eventual public dissemination of data, traditional security methods for restricted phases often lack granularity or incur prohibitive performance penalties. To address this, we present a framework that integrates a flexible policy engine for fine-grained access control with a novel GPU-accelerated implementation of the AES-GCM authenticated encryption protocol. The novelty of this work lies in the adaptation and optimization of a parallel tree-reduction strategy to overcome the main performance bottleneck in authenticated encryption on GPUs: the inherently sequential Galois/Counter Mode (GCM) authentication hash (GHASH). We present both the algorithmic adaptation and its efficient execution on GPU architectures. Building on optimized GPU AES kernels from recent work in cryptographic acceleration, this work presents the first integration of these techniques into a high-throughput, FITS-aware encryption framework specifically designed for large-scale astronomical data, combining cryptographic authentication, dual-key access control, and direct compatibility with the standard astronomical Python ecosystem. Our implementation transforms the sequential GHASH computation into a highly parallelizable, logarithmic-time process, achieving authenticated encryption throughput suitable for petabyte-scale image analysis. Our solution provides a robust mechanism for data providers to enforce access policies, ensuring both confidentiality and integrity without hindering research workflows, thereby facilitating a secure and managed transition of data to public, FAIR archives.

We introduce PoSME (Proof of Sequential Memory Execution), a cryptographic primitive that enforces sustained sequential computation via latency-bound pointer chasing over a mutable arena. Each step reads data-dependent addresses, writes a block whose value and causal hash are mutually dependent (symbiotic binding), and chains the result into a global transcript. This yields three properties: (1) strict linear sequential memory-step enforcement, (2) high time-memory trade-off resistance (a tenfold penalty at a write density of 4, with a formal space-time lower bound that scales quadratically with the number of steps), and (3) a tight ASIC advantage bound by DRAM random-access latency rather than bandwidth. Benchmarks across 17 CPU platforms and 4 GPU architectures demonstrate that hash computation is under 3.5 percent of step cost and GPU hardware is 14 to 19 times slower than a consumer CPU. POSME requires no trusted setup and provides a foundation for verifiable delay, authorship attestation, and Sybil resistance.

Distributed applications need identifiers that satisfy storage efficiency, chronological sortability, origin metadata embedding, zero-lookup verifiability, confidentiality for external consumers, and multi-century addressability. Based on our literature survey, no existing scheme provides all six of these identifier properties within a unified system. This paper introduces Source Known Identifiers (SKIDs), a three-tier identity system that projects a single entity identity across trust boundaries, addressing all six properties. The first tier, Source Known ID (SKID), is a 64-bit signed integer embedding a timestamp with a 250-millisecond precision, application topology, and a per-entity-type sequence counter. It serves as the database primary key, providing compact storage (8 bytes) and natural B-tree ordering for optimized database indexing. The second tier, Source Known Entity ID (SKEID), extends the SKID into a 128-bit Universally Unique Identifier (UUID) compatible value by adding an entity type discriminator, an epoch selector, and a BLAKE3 keyed message authentication code (MAC). SKEIDs enable zero-lookup verification of identifier origin, integrity, and entity type within trusted environments, with a big-endian byte layout that preserves chronological ordering in lexicographic UUID string comparisons. The third tier, Secure SKEID, encrypts the entire SKEID using AES-256 symmetric encryption as a single-block pseudorandom permutation, producing ciphertext indistinguishable from random bytes while remaining compatible with standard UUID data-type parsers in string representation. Deterministic bidirectional transformations connect all three tiers.

We report a way to make a frozen small language model both more capable and dramatically cheaper at once, without changing any weights. Verified knowledge is deposited once as a byte-exact key-value (KV) state artifact and later restored, by graft, into a fresh inference context. The restore is bit-exact: under a pinned deterministic configuration, the grafted logits are byte-for-byte identical to a fresh computation (SHA-256 equality), with zero KL divergence and 100% argmax agreement over fifty samples. We show that own-position graft is the unique numerically exact operating point on a model with floating-point rotary encoding, and we verify byte-exactness on two model scales (12B, 31B) and two GPU targets, one through a pre-registered replay. On AIME 2025, a frozen Gemma-4-12B moves from 80.0% to 93.3% once a verified solution library is grafted, above its own 77.5% and its 31B sibling's 89.2% published anchors. On the recurring case, eight problems the base model never solves within a 401,026-token budget are answered from cached verified solutions in 61 total decode tokens, a factor of 6,574 fewer tokens and about 8,700x less energy; the capability claim proper rests on held-out transfer (7 of 7 at 31B). The same byte-exact store widens usable context from 32,768 to 2,854,766 tokens at zero extra accelerator memory, and moves byte-identical between machines of the same architecture. We describe the system at the behavior level; the engine is proprietary, and every reported number is backed by committed input and output hashes so the scoring can be re-checked without it.

Metrics like FactScore and VeriScore that evaluate long-form factuality operate by decomposing an input response into atomic claims and then individually verifying each claim. While effective and interpretable, these methods incur numerous LLM calls and can take upwards of 100 seconds to evaluate a single response, limiting their practicality in large-scale evaluation and training scenarios. To address this, we propose VeriFastScore, which leverages synthetic data to fine-tune Llama3.1 8B for simultaneously extracting and verifying all verifiable claims within a given text based on evidence from Google Search. We show that this task cannot be solved via few-shot prompting with closed LLMs due to its complexity: the model receives ~4K tokens of evidence on average and needs to concurrently decompose claims, judge their verifiability, and verify them against noisy evidence. However, our fine-tuned VeriFastScore model demonstrates strong correlation with the original VeriScore pipeline at both the example level (r=0.80) and system level (r=0.94) while achieving an overall speedup of 6.6x (9.9x excluding evidence retrieval) over VeriScore. To facilitate future factuality research, we publicly release our VeriFastScore model and synthetic datasets.

Web search and other large-scale web data analytics rely on processing archives of web pages stored in a standardized and efficient format. Since its introduction in 2008, the IIPC's Web ARCive (WARC) format has become the standard format for this purpose. As a list of individually compressed records of HTTP requests and responses, it allows for constant-time random access to all kinds of web data via off-the-shelf open source parsers in many programming languages, such as WARCIO, the de-facto standard for Python. When processing web archives at the terabyte or petabyte scale, however, even small inefficiencies in these tools add up quickly, resulting in hours, days, or even weeks of wasted compute time. Reviewing the basic components of WARCIO and analyzing its bottlenecks, we proceed to build FastWARC, a new high-performance WARC processing library for Python, written in C++/Cython, which yields performance improvements by factors of 1.6-8x.

JEV models make multimodal decisions by directly scoring candidates. Although the common context is encoded once, candidate evaluation can still repeat matching token histories, duplicate inference states, and execute the full backbone. In this paper, we study these sources of redundancy and present FastJEV for compact candidate evaluation. We jointly organize history reuse and state storage, since sharing computation requires preserving states for later branches. We first introduce shared context anchoring to reuse recurrent initial states and omit unused final recurrent caches. We extend this reuse through candidate prefix sharing, retaining the intermediate states needed by subsequent branches. To further reduce the depth of these paths, we apply decision guided pruning based on relative score changes measured on a small unlabeled set. Our method retains full context encoding and all candidates without additional training. We evaluate FastJEV across three OmniJev model sizes on five public benchmarks and reconstructed LIBERO-10 offline questions. At the selected pruning budgets, the complete method reduces candidate depth by 43.75% to 45.83%, while retaining 93.66% to 97.52% of the original task scores on average across the six evaluation sets. Through controlled experiments, we show how candidate overlap and branching structure affect the execution cost of history reuse. In our implementation, candidate prefix sharing can reduce repeated computation while increasing latency. These findings motivate designing sharing granularity and execution schedules together for efficient JEV inference.

In this study, we propose a simple method for fault-tolerant Strassen-like matrix multiplications. The proposed method is based on using two distinct Strassen-like algorithms instead of replicating a given one. We have realized that using two different algorithms, new check relations arise resulting in more local computations. These local computations are found using computer aided search. To improve performance, special parity (extra) sub-matrix multiplications (PSMMs) are generated (two of them) at the expense of increasing communication/computation cost of the system. Our preliminary results demonstrate that the proposed method outperforms a Strassen-like algorithm with two copies and secures a very close performance to three copy version using only 2 PSMMs, reducing the total number of compute nodes by around 24\% i.e., from 21 to 16.

Speculative decoding speeds up LLM inference by using a small draft model to propose multiple tokens that a target model verifies in parallel. Extending this idea to batches is essential for production serving, but it introduces the ragged tensor problem: sequences in the same batch accept different numbers of draft tokens, breaking right-alignment and corrupting position IDs, attention masks, and KV-cache state. We show that several existing batch implementations violate output equivalence-the fundamental requirement that speculative decoding must produce identical token sequences to standard autoregressive generation. These violations occur precisely due to improper handling of the ragged tensor problem. In response, we (1) characterize the synchronization requirements that guarantee correctness, (2) present a correctness-first batch speculative decoding EQSPEC that exposes realignment as consuming 40% of overhead, and (3) introduce EXSPEC, which maintains a sliding pool of sequences and dynamically forms same-length groups, to reduce the realignment overhead while preserving per-sequence speculative speedups. On the SpecBench dataset, across Vicuna-7B/68M, Qwen3-8B/0.6B, and GLM-4-9B/0.6B target/draft pairs, our approach achieves up to 3times throughput improvement at batch size 8 compared to batch size 1, with efficient scaling through batch size 8, while maintaining 95% output equivalence. Our method requires no custom kernels and integrates cleanly with existing inference stacks. Our code is available at https://github.com/eBay/spec_dec.

As autonomous agentic systems scale across regulated critical infrastructures, the lack of mechanistic, hardware-rooted enforcement for high-frequency policy updates presents a fundamental safety gap. We introduce Ethical Hyper-Velocity (EHV), a novel architectural framework for the formal verification of AI governance policies at runtime. Unlike retrospective auditing frameworks (ISO/IEC 42001, NIST AI RMF) which introduce 14-30 day latencies, EHV relocates the Policy Enforcement Point (PEP) into the inference pipeline via a Governance-Aware Just-In-Time (JIT) Compiler. By integrating Conflict-free Replicated Data Types (CRDTs) for policy synchronization and Epoch-based Attestation Caching within Trusted Execution Environments (TEEs), EHV achieves Sub-millisecond Formal Determinism (SMFD). We demonstrate via TLA+ formal verification that non-compliant agentic actions are computationally unreachable within the system's bounded operating state space. We prove that O(1) runtime enforcement can eliminate the traditional trade-off between deployment velocity and governance integrity, reducing Governance Latency from O(days) to O(1).

To design fast neural networks, many works have been focusing on reducing the number of floating-point operations (FLOPs). We observe that such reduction in FLOPs, however, does not necessarily lead to a similar level of reduction in latency. This mainly stems from inefficiently low floating-point operations per second (FLOPS). To achieve faster networks, we revisit popular operators and demonstrate that such low FLOPS is mainly due to frequent memory access of the operators, especially the depthwise convolution. We hence propose a novel partial convolution (PConv) that extracts spatial features more efficiently, by cutting down redundant computation and memory access simultaneously. Building upon our PConv, we further propose FasterNet, a new family of neural networks, which attains substantially higher running speed than others on a wide range of devices, without compromising on accuracy for various vision tasks. For example, on ImageNet-1k, our tiny FasterNet-T0 is 2.8times, 3.3times, and 2.4times faster than MobileViT-XXS on GPU, CPU, and ARM processors, respectively, while being 2.9% more accurate. Our large FasterNet-L achieves impressive 83.5% top-1 accuracy, on par with the emerging Swin-B, while having 36% higher inference throughput on GPU, as well as saving 37% compute time on CPU. Code is available at https://github.com/JierunChen/FasterNet.

A MICRO 2024 best paper runner-up publication (the Mess paper) with all three artifact badges awarded (including "Reproducible") proposes a new benchmark to evaluate real and simulated memory system performance. In this paper, we demonstrate that the Ramulator 2.0 simulation results reported in the Mess paper are incorrect and, at the time of the publication of the Mess paper, irreproducible. We find that the authors of Mess paper made multiple trivial human errors in both the configuration and usage of the simulators. We show that by correctly configuring Ramulator 2.0, Ramulator 2.0's simulated memory system performance actually resembles real system characteristics well, and thus a key claimed contribution of the Mess paper is factually incorrect. We also identify that the DAMOV simulation results in the Mess paper use wrong simulation statistics that are unrelated to the simulated DRAM performance. Moreover, the Mess paper's artifact repository lacks the necessary sources to fully reproduce all the Mess paper's results. Our work corrects the Mess paper's errors regarding Ramulator 2.0 and identifies important issues in the Mess paper's memory simulator evaluation methodology. We emphasize the importance of both carefully and rigorously validating simulation results and contacting simulator authors and developers, in true open source spirit, to ensure these simulators are used with correct configurations and as intended. We encourage the computer architecture community to correct the Mess paper's errors. This is necessary to prevent the propagation of inaccurate and misleading results, and to maintain the reliability of the scientific record. Our investigation also opens up questions about the integrity of the review and artifact evaluation processes. To aid future work, our source code and scripts are openly available at https://github.com/CMU-SAFARI/ramulator2/tree/mess.

Query routing, the task to route user queries to different large language model (LLM) endpoints, can be considered as a text classification problem. However, out-of-distribution queries must be handled properly, as those could be about unrelated domains, queries in other languages, or even contain unsafe text. Here, we thus study a guarded query routing problem, for which we first introduce the Guarded Query Routing Benchmark (GQR-Bench, released as Python package gqr), covers three exemplary target domains (law, finance, and healthcare), and seven datasets to test robustness against out-of-distribution queries. We then use GQR-Bench to contrast the effectiveness and efficiency of LLM-based routing mechanisms (GPT-4o-mini, Llama-3.2-3B, and Llama-3.1-8B), standard LLM-based guardrail approaches (LlamaGuard and NVIDIA NeMo Guardrails), continuous bag-of-words classifiers (WideMLP, fastText), and traditional machine learning models (SVM, XGBoost). Our results show that WideMLP, enhanced with out-of-domain detection capabilities, yields the best trade-off between accuracy (88%) and speed (<4ms). The embedding-based fastText excels at speed (<1ms) with acceptable accuracy (80%), whereas LLMs yield the highest accuracy (91%) but are comparatively slow (62ms for local Llama-3.1:8B and 669ms for remote GPT-4o-mini calls). Our findings challenge the automatic reliance on LLMs for (guarded) query routing and provide concrete recommendations for practical applications. Source code is available: https://github.com/williambrach/gqr.

When agentic sessions run to a million tokens with many sessions resident at once, the KV cache and the index that ranks it live in host memory, and the scan that ranks all n keys for a top-k step becomes the traffic that bounds decoding. We present Fathom, a key scan in which each query decides how many bits of each key channel to read. The 4-bit K cache is stored channel-major as bit planes, so a prefix of t planes is exactly the channel's t-bit quantizer, and the query spends its bit budget by reverse water-filling over the variance-weighted importance of its channels. At one million tokens on Qwen3-8B a decode step is 1.67x faster in GPU time than with the 136-bit scans of Double Sparsity, Loki and SparQ r=32, and in the same GPU time as SparQ's 68-bit read (r=16) Fathom reads 18% fewer bytes with lower attention error on six of seven model and context settings. On RULER-style tasks every per-token scan matches exact top-k decoding, and on real coding-agent sessions Fathom reaches the step agreement of the most accurate 136-bit scan at 92 bits. The store is the 4-bit K copy a quantized serving stack already holds, and the method is not faster when the index is resident in GPU memory.

Diffusion Large Language Models (dLLMs) offer fast, parallel token generation, but their standalone use is plagued by an inherent efficiency-quality tradeoff. We show that, if carefully applied, the attributes of dLLMs can actually be a strength for drafters in speculative decoding with autoregressive (AR) verifiers. Our core insight is that dLLM's speed from parallel decoding drastically lowers the risk of costly rejections, providing a practical mechanism to effectively realize the (elusive) lengthy drafts that lead to large speedups with speculative decoding. We present FailFast, a dLLM-based speculative decoding framework that realizes this approach by dynamically adapting its speculation length. It "fails fast" by spending minimal compute in hard-to-speculate regions to shrink speculation latency and "wins big" by aggressively extending draft lengths in easier regions to reduce verification latency (in many cases, speculating and accepting 70 tokens at a time!). Without any fine-tuning, FailFast delivers lossless acceleration of AR LLMs and achieves up to 4.9times speedup over vanilla decoding, 1.7times over the best naive dLLM drafter, and 1.4times over EAGLE-3 across diverse models and workloads. We open-source FailFast at https://github.com/ruipeterpan/failfast.

This preprint presents an empirical analysis of byte-exact chunk-level deduplication in Retrieval-Augmented Generation (RAG) pipelines. We measure context reduction across three distinct operating regimes: clean academic retrieval (0.16% byte reduction on 22.2M BeIR passages), constructed enterprise patterns (24.03% reduction), and multi-turn conversational AI (80.34% reduction). To validate quality preservation, we conducted a cross-vendor 5-judge calibrated panel evaluation across four production APIs (Google Gemini 2.5 Flash, Anthropic Claude Sonnet 4.6, Meta Llama 3.3 70B, and OpenAI GPT-5.1). Applying a five-category human-in-the-loop noise-removal protocol to panel-majority materially different (MAT) pairs, we establish that byte-exact deduplication introduces zero measurable quality regression. Post-audit, all four vendors clear the strict <5% Wilson 95% upper-bound MAT threshold in both the clean and high-redundancy RAG regimes. This work demonstrates that substantial inference compute savings can be achieved deterministically without compromising evaluation-grade model quality.

Training LLMs on decentralized and wimpy computation nodes, e.g., multiple on-spot instances, lowers the training cost and enables model democratization. The inevitable challenge here is the churn of nodes due to failures and the operator's scheduling policies, leading to losing a stage - a part of the model. The conventional approaches to recover from failures are to either use checkpointing, where periodically a copy of the entire model is sent to an additional storage, or redundant computation. These approaches yield significant communication and/or computation overhead even in non-failure cases and scale poorly in settings with large models. In this paper, we propose, CheckFree, an efficient recovery method where a failing stage is substituted by a weighted average of the closest neighboring stages. In contrast to the state of the art, CheckFree requires no additional computation or storage. However, because of the nature of averaging neighbouring stages, it can only recover failures of intermediate stages. We further extend our method to CheckFree+ with out-of-order pipeline execution to tolerate crashes of the first and last stages. Thanks to out-of-order pipelining, behaviour of those stages is mimicked by their neighboring ones, which allows CheckFree+ to recover them by simply copying the weights from the immediate neighbour. To be able to recover the (de)embedding layers, CheckFree+ copies those layers to the neighboring stages, which requires relatively small storage overhead. We extensively evaluate our method on LLaMa models of model sizes from 124M to 1.5B with varying failure frequencies. In the case of low and medium failure rates (5-10%), CheckFree and CheckFree+ outperform both checkpointing and redundant computation in terms of convergence in wall-clock time by over 12%. Both of our proposals can be run via our code available at: https://github.com/gensyn-ai/CheckFree.

We present StateSMix, a fully self-contained lossless compressor that couples an online-trained Mamba-style State Space Model (SSM) with sparse n-gram context mixing and arithmetic coding. The model is initialised from scratch and trained token-by-token on the file being compressed, requiring no pre-trained weights, no GPU, and no external dependencies. The SSM (DM=32, NL=2, approximately 120K active parameters per file) provides a continuously-updated probability estimate over BPE tokens, while nine sparse n-gram hash tables (bigram through 32-gram, 16M slots each) add exact local and long-range pattern memorisation via a softmax-invariant logit-bias mechanism that updates only non-zero-count tokens. An entropy-adaptive scaling mechanism modulates the n-gram contribution based on the SSM's predictive confidence, preventing over-correction when the neural model is already well-calibrated. On the standard enwik8 benchmark, StateSMix achieves 2.123 bpb on 1 MB, 2.149 bpb on 3 MB, and 2.162 bpb on 10 MB, beating xz -9e (LZMA2) by 8.7%, 5.4%, and 0.7% respectively. Ablation experiments establish the SSM as the dominant compression engine: it alone accounts for a 46.6% size reduction over a frequency-count baseline and beats xz without any n-gram component, while n-gram tables provide a complementary 4.1% gain through exact context memorisation. OpenMP parallelisation of the training loop yields 1.9x speedup on 4 cores. The system is implemented in pure C with AVX2 SIMD and processes approximately 2,000 tokens per second on commodity x86-64 hardware.

Diffusion large language models promise parallel token generation, yet inference remains bottlenecked by deciding which masked tokens can be safely committed together. Fast-dLLM addressed this with KV caching and confidence-guided parallel decoding, but its decoding theory uses a homogeneous high-confidence assumption that effectively reduces each candidate set to its weakest selected token. We argue that this leaves speed on the table because real decoding steps exhibit heterogeneous confidence profiles. We propose Fast-dLLM++, a training-free extension that introduces Fréchet profile decoding: selecting parallel commit sets from the full sorted confidence profile rather than a single worst-case confidence. The resulting rule is a heterogeneous-confidence generalization of Fast-dLLM's factor selector and it recovers the previous rule exactly in the equal-confidence case and adds a provable heterogeneity bonus when the selected tokens have uneven confidences. Fast-dLLM++ leaves the model, diffusion process, and cache implementation entirely unchanged, making it a drop-in replacement for existing Fast-dLLM decoding. Experiments on GSM8K, MATH, HumanEval, and MBPP with the LLaDA-8B model show that the theoretical improvement translates directly into empirical gains: profile-aware selection improves the accuracy--throughput frontier by exploiting safe parallelism that weakest-token rules miss, achieving up to 37\% higher throughput at comparable accuracy. Our code release is at https://github.com/Ringo-Star/FastdLLM_plusplus.

Corruption studies, the primary tool for evaluating chain-of-thought (CoT) faithfulness, identify which chain positions are "computationally important" by measuring accuracy when steps are replaced with errors. We identify a systematic confound: for chains with explicit terminal answer statements, the dominant format in standard benchmarks, corruption studies detect where the answer text appears, not where computation occurs. A within-dataset format ablation provides the key evidence: on standard GSM8K chains ending with "the answer is X," removing only the answer statement, preserving all reasoning, collapses suffix sensitivity ~19x at 3B (N=300, p=0.022). Conflicting-answer experiments quantify the causal mechanism: at 7B, CC accuracy drops to near-zero (<=0.02) across five architecture families; the followed-wrong rate spans 0.63-1.00 at 3B-7B and attenuates at larger scales (0.300 at Phi-4-14B, ~0.01 at 32B). A within-stable 7B replication (9.3x attenuation, N=76, p=7.8e-3; Qwen3-8B N=299, p=0.004) provides converging evidence, and the pattern replicates on MATH (DeepSeek-R1-7B: 10.9x suffix-survival recovery). On chains without answer suffixes the same protocol identifies the prefix as load-bearing (Delta=-0.77, p<10^-12). Generation-time probes confirm a dissociation: the answer is not early-determined during generation (early commitment <5%), yet at consumption time model outputs systematically follow the explicit answer text. The format-determination effect persists through 14B (8.5x ratio, p=0.001) and converges toward zero at 32B. We propose a three-prerequisite protocol (question-only control, format characterization, all-position sweep) as a minimum standard for corruption-based faithfulness studies.

We introduce QUICK, a group of novel optimized CUDA kernels for the efficient inference of quantized Large Language Models (LLMs). QUICK addresses the shared memory bank-conflict problem of state-of-the-art mixed precision matrix multiplication kernels. Our method interleaves the quantized weight matrices of LLMs offline to skip the shared memory write-back after the dequantization. We demonstrate up to 1.91x speedup over existing kernels of AutoAWQ on larger batches and up to 1.94x throughput gain on representative LLM models on various NVIDIA GPU devices.

Large language models (LLMs) are increasingly used to generate scientific reports, but they can produce references that appear plausible while containing corrupted metadata or pointing to papers that do not exist. We introduce CiteCheck, a hybrid framework for citation hallucination detection that verifies whether a citation corresponds to a real scholarly work and whether its metadata is faithful to that work. CiteCheck retrieves candidate publications from external scholarly sources, compares the citation against the retrieved candidate using a structured LLM verifier, and maps verifier scores into three labels: Exact, Minor, and Major. We also construct a 982-citation physics benchmark with controlled corruptions that capture both subtle metadata drift and fully fabricated references. On the held-out test set, CiteCheck achieves 88.7 macro-F1 and 88.9% accuracy, outperforming GPT, Claude, and Gemini baselines, including web-search and few-shot variants. These results show that reliable citation verification benefits from combining scholarly retrieval, structured LLM-based comparison, and calibrated decision rules.

Recent advances in sequence modeling have introduced selective SSMs as promising alternatives to Transformer architectures, offering theoretical computational efficiency and sequence processing advantages. A comprehensive understanding of selective SSMs in runtime behavior, resource utilization patterns, and scaling characteristics still remains unexplored, thus obstructing their optimal deployment and further architectural improvements. This paper presents a thorough empirical study of Mamba-1 and Mamba-2, systematically profiled for performance to assess the design principles that contribute to their efficiency in state-space modeling. A detailed analysis of computation patterns, memory access, I/O characteristics, and scaling properties was performed for sequence lengths ranging from 64 to 16384 tokens. Our findings show that the SSM component, a central part of the selective SSM architecture, demands a significant portion of computational resources compared to other components in the Mamba block. Based on these insights, we propose a pruning technique that selectively removes low-activity states within the SSM component, achieving measurable throughput and memory gains while maintaining accuracy within a moderate pruning regime. This approach results in performance improvements across varying sequence lengths, achieving a 1.14x speedup and reducing memory usage by 11.50\%. These results offer valuable guidance for designing more efficient SSM architectures that can be applied to a wide range of real-world applications.

Agent Skills package procedural instructions and checks for use by general-purpose agents, but loading a skill does not guarantee that every requirement remains active throughout a long tool-using trajectory. We study this problem in a production-derived, white-box code-audit workflow. Holding the task and 24 artifact checks fixed, we vary the surrounding context and classify where failures first become visible: lost requirements, editing drift, failed checking, or non-agent evaluator/runtime failures. Codex with gpt-5.4-mini passes 8/10 runs in a 10,991-character clean context but only 3/10 in both a 299,140-character relevant context and an equal-length irrelevant context. This 50-percentage-point difference is large but remains trend-level under two-sided Fisher tests (p = 0.0698). Requirement coverage nevertheless stays above 92% in both long conditions, showing that a few omissions can invalidate an otherwise complete artifact. A second task passes all clean and long runs, so the evidence does not support a universal context-length threshold. A detailed external checklist passes 10/10 runs, compared with 5/10 for a generic self-check (p = 0.0325). Coding-agent scaffolds may help by selecting a smaller working set, but they do not eliminate failures. We do not introduce context rot or a new general monitoring method; we provide a bounded failure classification and empirical case study for white-box code auditing.

The deployment and scaling of large language models (LLMs) have become critical as they permeate various applications, demanding high-throughput and low-latency serving systems. Existing frameworks struggle to balance these requirements, especially for workloads with long prompts. This paper introduces DeepSpeed-FastGen, a system that employs Dynamic SplitFuse, a novel prompt and generation composition strategy, to deliver up to 2.3x higher effective throughput, 2x lower latency on average, and up to 3.7x lower (token-level) tail latency, compared to state-of-the-art systems like vLLM. We leverage a synergistic combination of DeepSpeed-MII and DeepSpeed-Inference to provide an efficient and easy-to-use serving system for LLMs. DeepSpeed-FastGen's advanced implementation supports a range of models and offers both non-persistent and persistent deployment options, catering to diverse user scenarios from interactive sessions to long-running applications. We present a detailed benchmarking methodology, analyze the performance through latency-throughput curves, and investigate scalability via load balancing. Our evaluations demonstrate substantial improvements in throughput and latency across various models and hardware configurations. We discuss our roadmap for future enhancements, including broader model support and new hardware backends. The DeepSpeed-FastGen code is readily available for community engagement and contribution.

Data-intensive applications, ranging from large-scale retrieval systems to advanced data pipelines, are increasingly bottlenecked by the processing of highly redundant text corpora. We present Merlin, a local-first, agnostic, high-throughput deduplication and context optimization engine designed to mitigate these inefficiencies. Utilizing a highly optimized, SIMD-friendly open-addressing flat hash set combined with xxHash3-64, Merlin performs rapid, byte-exact deduplication of text passages and data chunks. While broadly applicable to any text-processing workflow, its impact is particularly pronounced in Large Language Model (LLM) ecosystems, such as Retrieval-Augmented Generation (RAG). Our empirical evaluations demonstrate an input reduction ranging from 13.9% in low-redundancy datasets to over 71% in high-redundancy pipelines, maintaining absolute data fidelity. Furthermore, we detail the system's integration architecture via the Model Context Protocol (MCP), enabling secure, zero-network-interception deployment across major IDEs and autonomous agents. This paper outlines the core algorithmic design, performance benchmarks, and the architectural principles required to process data at sustained speeds of up to 8.7 GB/s.

In LLM inference, the same prompt may yield different outputs across different runs. At the system level, this non-determinism arises from floating-point non-associativity combined with dynamic batching and GPU kernels whose reduction orders vary with batch size. A straightforward way to eliminate non-determinism is to disable dynamic batching during inference, but doing so severely degrades throughput. Another approach is to make kernels batch-invariant; however, this tightly couples determinism to kernel design, requiring new implementations. This coupling also imposes fixed runtime overheads, regardless of how much of the workload actually requires determinism. Inspired by ideas from speculative decoding, we present LLM-42, a scheduling-based approach to enable determinism in LLM inference. Our key observation is that if a sequence is in a consistent state, the next emitted token is likely to be consistent even with dynamic batching. Moreover, most GPU kernels use shape-consistent reductions. Leveraging these insights, LLM-42 decodes tokens using a non-deterministic fast path and enforces determinism via a lightweight verify-rollback loop. The verifier replays candidate tokens under a fixed-shape reduction schedule, commits those that are guaranteed to be consistent across runs, and rolls back those violating determinism. LLM-42 mostly re-uses existing kernels unchanged and incurs overhead only in proportion to the traffic that requires determinism.

Checkpointing to preserve training states is crucial during the development of Large Foundation Models (LFMs), for training resumption upon various failures or changes in GPU resources and parallelism configurations. In addition, saved checkpoints are dispatched to evaluation tasks or transferred across different training stages (e.g., from pre-training to post-training). All these scenarios require resharding distributed checkpoints from one parallelism to another. In production environments, different LFMs are trained with various frameworks and storage backends, depending on model sizes and training scales. A high-performance checkpointing system is needed to enable efficient checkpoint management at scale throughout the lifecycle of LFM development. We introduce ByteCheckpoint, an industrial-grade checkpointing system for large-scale LFM training. ByteCheckpoint features: a parallelism-agnostic checkpoint representation that enables efficient load-time checkpoint resharding; a generic checkpoint saving/loading workflow to accommodate multiple training frameworks and support different storage backends; full-stack optimizations to ensure high I/O efficiency and scalability; a suite of monitoring tools to streamline large-scale performance analysis and bottleneck detection. Compared to existing open-source checkpointing systems [52, 58], ByteCheckpoint significantly reduces runtime checkpoint stalls, achieving an average reduction of 54.20x. For saving and loading times, ByteCheckpoint achieves improvements of up to 9.96x and 8.80x, respectively.

Concurrent LLM agents sharing mutable natural-language state produce Structural Race Conditions (SRCs): write-write and cross-shard stale-read conflicts that silently corrupt agent output. Existing multi-agent frameworks (LangGraph, CrewAI, AutoGen) provide no write-ownership semantics over shared state. We present S-Bus, an HTTP middleware whose central mechanism is a server-side DeliveryLog: a per-agent log of HTTP GET operations that automatically reconstructs each agent's read set at commit time without agent SDK changes under HTTP/1.1. The consistency property the DeliveryLog provides -- Observable-Read Isolation (ORI), a partial causal consistency over the HTTP-observable projection of the read set -- prevents structural race conditions when agents collaborate via shared shards. Three contributions: (C1) The DeliveryLog mechanism for automatic HTTP-traffic-based read-set reconstruction, with three-tier mechanised evidence: ReadSetSoundness and ORICommitSafety machine-checked in TLAPS (modulo one retained typing axiom); exhaustive TLC at N=3 (20,763,484 distinct states, zero violations); Dafny discharges 9 inductive soundness lemmas. (C2) Empirical structural-conflict prevention parity against PostgreSQL 17 SERIALIZABLE and Redis 7 WATCH/MULTI on shared-shard contention sweeps with 427,308 active HTTP-409 conflicts: zero Type-I corruptions across all three backends. (C3) ORI's operating envelope is topology-conditional: semantically neutral in dedicated-shard workloads; harmful in single-shard collaborative writing because preservation propagates concurrent contradictions. Source code: https://github.com/sajjadanwar0/sbus

Document-based LLM systems often flatten a PDF before guardrails inspect it. That step can discard evidence that an instruction was never visible to the user. We introduce CrackedPDFs, a controlled benchmark for hidden prompt injection in PDFs. The benchmark contains 29,322 generated PDFs from 4,983 base docu ments. It includes 9,774 injected files and 19,548 benign or matched-confounder files. We evaluate PromptGuard and a rule baseline. We also evaluate structural only learned models and a sanitized hybrid detector. The evaluation uses held-out provenance splits and paired benign-confounder controls. It also uses label-shuffle checks and shortcut audits. On a 2,919-document held-out test set, the hybrid de tector reaches 0.960 F1. ROC-AUC is 0.998 and PR-AUC is 0.997. It also ranks injected files above matched benign confounders in 95.9% of 973 pairs. Prompt Guard has low recall when given extracted text only. Structural-only learned mod els are weak under paired controls. A text-only TF-IDF model reaches perfect held-out scores but fails shortcut audits. These results show that document-aware hybrid detection is useful under controlled paired evaluation. They do not show broad real-world robustness or reliable cross-family generalization.

Benchmarks for LLM-generated GPU kernels decide correctness with a few random inputs and a loose floating-point tolerance, and their verdicts now feed leaderboards and reinforcement-learning rewards. Recent work agrees these checkers are weak and patches them by hand---extra input distributions, fuzzing recipes, tighter tolerances---with no way to measure whether any patch suffices. We introduce mutation analysis as an adequacy metric for kernel-benchmark oracles: deterministic rules inject 10{,}303 compilable faults into verified CUDA implementations of 188 KernelBench problems, 7{,}384 of them with an independent kill witness; any test protocol is scored by the fraction it detects. The official check misses one in six witnessed faults (16.9%), deterministically, and the misses are skewed by family: 8.7% of arithmetic faults escape, but 78.6% of precision faults do. The metric explains why (a tolerance blind band growing with reduction size; a measured ceiling on input aggressiveness set by legitimate floating-point variance), audits the strongest existing patch (KernelBench-Verified's gain splits into +4.0 points from hidden inputs and +4.5 from tighter tolerance, a split its authors could not compute), and exposes a published fuzzing recipe that rejects correct kernels 107 times. Optimizing suites over the kill matrix reaches 98.0% detection with two inputs per problem (94.8% held-out), and the measurement's fault taxonomy teaches a test generator more than the raw faults themselves. Across 48 whole architectures, the blindness grows with scale, concentrating in deep homogeneous pipelines, and two problems prove unrefereeable: their official references violate the benchmark's own tolerance against fp64. We release everything as https://huggingface.co/datasets/Elfsong/KernelBench-M{KernelBench-M}.

Model signing authenticates the full-precision weights W an LLM is released with, yet users run a quantized artifact Q whose producing transformation is not uniquely determined under current disclosure. We separate the non-environment inputs from the execution environment E and measure a quantity that, to our knowledge, has not been measured before: the Independent Verifiability Rate (IVR), the fraction of a popularity-sampled GGUF ecosystem that a third party can re-derive bit-for-bit. Across the 200 most-downloaded Hugging Face GGUF repositories (198 in scope), no artifact or model card records the build environment, so under a recorded-inputs protocol the IVR is 0/198. Yet the artifacts are not irreproducible. On four in-sample repositories that disclose their inputs, the card's information alone reproduces no Q4_K_M file, but two coordinates the card omits - the build's floating-point-contraction setting and, for hybrid models, the per-tensor quantization recipe - re-derive 7/8 target-quant files bit-for-bit on x86 (5/8 on arm64); the fp16 re-derives from the provider's checkpoint, but the calibration imatrix must be shipped and hash-bound, since recomputing it did not match. An older release additionally pins the instruction set and did not re-derive. Reproducing the divergence reported with llama.cpp PR #25353, we show that E is a necessary coordinate and that one compiler setting yields a unique output across the tested platforms at negligible quality cost (+0.06% perplexity). As a security characterization, benign floating-point non-determinism separates from uniformly placed nibble-flip tampering above a detection floor that grows with the environments a verifier must allow, but a targeted embedding edit evades the statistic, so the proposed protocol rests on exact re-derivation; adversarial-fp16 attacks lie outside it. We release the audit data and a re-runnable harness.

A key advantage of Recurrent Neural Networks (RNNs) over Transformers is their linear computational and space complexity enables faster training and inference for long sequences. However, RNNs are fundamentally unable to randomly access historical context, and simply integrating attention mechanisms may undermine their efficiency advantages. To overcome this limitation, we propose Hierarchical Sparse Attention (HSA), a novel attention mechanism that enhances RNNs with long-range random access flexibility while preserving their merits in efficiency and length generalization. HSA divides inputs into chunks, selecting the top-k chunks and hierarchically aggregates information. The core innovation lies in learning token-to-chunk relevance based on fine-grained token-level information inside each chunk. This approach enhances the precision of chunk selection across both in-domain and out-of-domain context lengths. To make HSA efficient, we further introduce a hardware-aligned kernel design. By combining HSA with Mamba, we introduce RAMba, which achieves perfect accuracy in passkey retrieval across 64 million contexts despite pre-training on only 4K-length contexts, and significant improvements on various downstream tasks, with nearly constant memory footprint. These results show RAMba's huge potential in long-context modeling.

Behaviour-Driven Development (BDD) suites accumulate step-text duplication whose maintenance cost is established in prior work. Existing detection techniques require running the tests (Binamungu et al., 2018-2023) or are confined to a single organisation (Irshad et al., 2020-2022), leaving a gap: a purely static, paraphrase-robust, step-level detector usable on any repository. We fill the gap with cukereuse, an open-source Python CLI combining exact hashing, Levenshtein ratio, and sentence-transformer embeddings in a layered pipeline, released alongside an empirical corpus of 347 public GitHub repositories, 23,667 parsed .feature files, and 1,113,616 Gherkin steps. The step-weighted exact-duplicate rate is 80.2 %; the median-repository rate is 58.6 % (Spearman rho = 0.51 with size). The top hybrid cluster groups 20.7k occurrences across 2.2k files. Against 1,020 pairs manually labelled by the three authors under a released rubric (inter-annotator Fleiss' kappa = 0.84 on a 60-pair overlap), we report precision, recall, and F1 with bootstrap 95 % CIs under two protocols: the primary rubric and a score-free second-pass relabelling. The strongest honest pair-level number is near-exact at F1 = 0.822 on score-free labels; the primary-rubric semantic F1 = 0.906 is inflated by a stratification artefact that pins recall at 1.000. Lexical baselines (SourcererCC-style, NiCad-style) reach primary F1 = 0.761 and 0.799. The paper also presents a CDN-structured critique of Gherkin (Cognitive Dimensions of Notations); eight of fourteen dimensions are rated problematic or unsupported. The tool, corpus, labelled pairs, rubric, and pipeline are released under permissive licences.