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Oct 23

VGL-stGen: Learning a shared multimodal model for lung histology and spatial transcriptomics

VGL-stGen is a multimodal large language model adapted from a pretrained medical vision-language model using paired lung H&E and spatial transcriptomics with single-cell references. Training integrates image-expression and expression-cell-type pairs, and gene-conditioned pseudo-labels transfer transcriptomic cell-type supervision to histology images. One deployed checkpoint supports thirteen evaluated tasks spanning tissue and cell-type classification, gene prediction and conditional expression completion from combinations of histology, cell identity and observed gene expression. Task-specific decoding produces categorical labels, gene lists and structured expression levels. For conditional completion, fixing queried gene identities and predicting their levels autoregressively improves structured prediction. Controlled adaptation shows that restricting supervision to requested expression-level tokens can further improve image-conditioned completion. Image-permutation experiments indicate that correctly paired histology adds information beyond observed expression. External classification relies partly on computational references with shared annotation lineage, and some H&E sources were exposed during cancer training or model development. Within these conditions, VGL-stGen demonstrates how a medical vision-language backbone can learn from spatial transcriptomics and histology to connect tissue morphology and molecular states through shared generative modeling.

  • 6 authors
·
Oct 19

CURE: Controllable Unified Image Restoration for Complex Degradations

The presence of composite degradations poses a significant challenge, since the underlying corruption factors exhibit complex and interdependent interactions. Even when the degradation types are known, accurately restoring the image remains difficult due to the intertwined nature of their effects and the need for selective control during the recovery process. To address this, we introduce CURE, a unified framework that enables controllable restoration in complex degradation settings by learning disentangled and adjustable representations. CURE is driven by four complementary objectives. First, an identity embedding is incorporated, along with a reconstruction constraint, to ensure that the model can reproduce the input image when restoration is unnecessary. Second, the ratio control mechanism blends the identity embedding with degradation-specific embeddings using user-regulated mixing ratios, allowing continuous control over restoration intensity. Third, an intermediate loss is applied to supervise stepwise outputs, each encouraged to tackle the removal of only a single degradation factor within a composite mixture. Finally, a permutation-invariant loss ensures that the model achieves consistent restoration quality regardless of the order in which multiple degradations are addressed. Since CURE modifies only the training strategy and not the underlying network architecture, it can be seamlessly integrated into existing controllable restoration models. Experiments demonstrate that CURE delivers state-of-the-art performance on composite degradation benchmarks, while enabling both selective and jointly fused restoration through flexible modulation of embedding ratios. The code and dataset are available at https://github.com/bo-oseng/CURE.

  • 2 authors
·
Jul 2

Semantic-Aware Autoregressive Image Modeling for Visual Representation Learning

The development of autoregressive modeling (AM) in computer vision lags behind natural language processing (NLP) in self-supervised pre-training. This is mainly caused by the challenge that images are not sequential signals and lack a natural order when applying autoregressive modeling. In this study, inspired by human beings' way of grasping an image, i.e., focusing on the main object first, we present a semantic-aware autoregressive image modeling (SemAIM) method to tackle this challenge. The key insight of SemAIM is to autoregressive model images from the semantic patches to the less semantic patches. To this end, we first calculate a semantic-aware permutation of patches according to their feature similarities and then perform the autoregression procedure based on the permutation. In addition, considering that the raw pixels of patches are low-level signals and are not ideal prediction targets for learning high-level semantic representation, we also explore utilizing the patch features as the prediction targets. Extensive experiments are conducted on a broad range of downstream tasks, including image classification, object detection, and instance/semantic segmentation, to evaluate the performance of SemAIM. The results demonstrate SemAIM achieves state-of-the-art performance compared with other self-supervised methods. Specifically, with ViT-B, SemAIM achieves 84.1% top-1 accuracy for fine-tuning on ImageNet, 51.3% AP and 45.4% AP for object detection and instance segmentation on COCO, which outperforms the vanilla MAE by 0.5%, 1.0%, and 0.5%, respectively.

  • 3 authors
·
Dec 16, 2023

Knowledge distillation to effectively attain both region-of-interest and global semantics from an image where multiple objects appear

Models based on convolutional neural networks (CNN) and transformers have steadily been improved. They also have been applied in various computer vision downstream tasks. However, in object detection tasks, accurately localizing and classifying almost infinite categories of foods in images remains challenging. To address these problems, we first segmented the food as the region-of-interest (ROI) by using the segment-anything model (SAM) and masked the rest of the region except ROI as black pixels. This process simplified the problems into a single classification for which annotation and training were much simpler than object detection. The images in which only the ROI was preserved were fed as inputs to fine-tune various off-the-shelf models that encoded their own inductive biases. Among them, Data-efficient image Transformers (DeiTs) had the best classification performance. Nonetheless, when foods' shapes and textures were similar, the contextual features of the ROI-only images were not enough for accurate classification. Therefore, we introduced a novel type of combined architecture, RveRNet, which consisted of ROI, extra-ROI, and integration modules that allowed it to account for both the ROI's and global contexts. The RveRNet's F1 score was 10% better than other individual models when classifying ambiguous food images. If the RveRNet's modules were DeiT with the knowledge distillation from the CNN, performed the best. We investigated how architectures can be made robust against input noise caused by permutation and translocation. The results indicated that there was a trade-off between how much the CNN teacher's knowledge could be distilled to DeiT and DeiT's innate strength. Code is publicly available at: https://github.com/Seonwhee-Genome/RveRNet.

  • 1 authors
·
Jul 11, 2024

Refaçade: Editing Object with Given Reference Texture

Recent advances in diffusion models have brought remarkable progress in image and video editing, yet some tasks remain underexplored. In this paper, we introduce a new task, Object Retexture, which transfers local textures from a reference object to a target object in images or videos. To perform this task, a straightforward solution is to use ControlNet conditioned on the source structure and the reference texture. However, this approach suffers from limited controllability for two reasons: conditioning on the raw reference image introduces unwanted structural information, and it fails to disentangle the visual texture and structure information of the source. To address this problem, we propose Refaçade, a method that consists of two key designs to achieve precise and controllable texture transfer in both images and videos. First, we employ a texture remover trained on paired textured/untextured 3D mesh renderings to remove appearance information while preserving the geometry and motion of source videos. Second, we disrupt the reference global layout using a jigsaw permutation, encouraging the model to focus on local texture statistics rather than the global layout of the object. Extensive experiments demonstrate superior visual quality, precise editing, and controllability, outperforming strong baselines in both quantitative and human evaluations. Code is available at https://github.com/fishZe233/Refacade.

  • 6 authors
·
Dec 4, 2025

Visual Aesthetic Benchmark: Can Frontier Models Judge Beauty?

Multimodal large language models (MLLMs) are now routinely deployed for visual understanding, generation, and curation. A substantial fraction of these applications require an explicit aesthetic judgment. Most existing solutions reduce this judgment to predicting a scalar score for a single image. We first ask whether such scores faithfully capture comparative preference: in a controlled study with eight expert annotators, score-derived rankings align poorly with the same annotators' direct comparisons, while direct ranking yields substantially higher inter-annotator agreement on best- and worst-image labels. Motivated by this finding, we introduce the Visual Aesthetic Benchmark (VAB), which casts aesthetic evaluation as comparative selection over candidate sets with matched subject matter. VAB contains 400 tasks and 1,195 images across fine art, photography, and illustration, with labels derived from the consensus of 10 independent expert judges per task. Evaluating 20 frontier MLLMs and six dedicated visual-quality reward models, we find that the strongest system identifies both the best and the worst image correctly across three random permutations of the candidate order in only 26.5% of tasks, far below the 68.9% achieved by human experts. Fine-tuning a 35B-parameter model on 2,000 expert examples brings its accuracy close to that of a 397B-parameter open-weight model, suggesting that the comparative signal in VAB is transferable. Together, these results expose a clear and measurable gap between current multimodal models and expert aesthetic judgment, and VAB provides the first set-based, expert-grounded testbed on which that gap can be tracked and closed.

  • 17 authors
·
May 11

Robust Attentional Aggregation of Deep Feature Sets for Multi-view 3D Reconstruction

We study the problem of recovering an underlying 3D shape from a set of images. Existing learning based approaches usually resort to recurrent neural nets, e.g., GRU, or intuitive pooling operations, e.g., max/mean poolings, to fuse multiple deep features encoded from input images. However, GRU based approaches are unable to consistently estimate 3D shapes given different permutations of the same set of input images as the recurrent unit is permutation variant. It is also unlikely to refine the 3D shape given more images due to the long-term memory loss of GRU. Commonly used pooling approaches are limited to capturing partial information, e.g., max/mean values, ignoring other valuable features. In this paper, we present a new feed-forward neural module, named AttSets, together with a dedicated training algorithm, named FASet, to attentively aggregate an arbitrarily sized deep feature set for multi-view 3D reconstruction. The AttSets module is permutation invariant, computationally efficient and flexible to implement, while the FASet algorithm enables the AttSets based network to be remarkably robust and generalize to an arbitrary number of input images. We thoroughly evaluate FASet and the properties of AttSets on multiple large public datasets. Extensive experiments show that AttSets together with FASet algorithm significantly outperforms existing aggregation approaches.

  • 4 authors
·
Aug 2, 2018

JigsawGAN: Auxiliary Learning for Solving Jigsaw Puzzles with Generative Adversarial Networks

The paper proposes a solution based on Generative Adversarial Network (GAN) for solving jigsaw puzzles. The problem assumes that an image is divided into equal square pieces, and asks to recover the image according to information provided by the pieces. Conventional jigsaw puzzle solvers often determine the relationships based on the boundaries of pieces, which ignore the important semantic information. In this paper, we propose JigsawGAN, a GAN-based auxiliary learning method for solving jigsaw puzzles with unpaired images (with no prior knowledge of the initial images). We design a multi-task pipeline that includes, (1) a classification branch to classify jigsaw permutations, and (2) a GAN branch to recover features to images in correct orders. The classification branch is constrained by the pseudo-labels generated according to the shuffled pieces. The GAN branch concentrates on the image semantic information, where the generator produces the natural images to fool the discriminator, while the discriminator distinguishes whether a given image belongs to the synthesized or the real target domain. These two branches are connected by a flow-based warp module that is applied to warp features to correct the order according to the classification results. The proposed method can solve jigsaw puzzles more efficiently by utilizing both semantic information and boundary information simultaneously. Qualitative and quantitative comparisons against several representative jigsaw puzzle solvers demonstrate the superiority of our method.

  • 5 authors
·
Jul 14, 2022