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Nov 11

BEND 2.0: Benchmarking the Capabilities Needed to Design DNA

Genomic foundation models are increasingly used to propose DNA sequences and edits. But successful design requires capabilities that current benchmarks do not measure. Here we introduce BEND 2.0 (BENchmark for DNA language models), which tests how well models predict the effects of DNA changes and whether these predictions can guide sequence design. Across eight tasks built on five experimental datasets, we find that model choice and how representations are accessed both affect performance. Linear readouts fitted to frozen representations can match or exceed models' native outputs, and functional post-training substantially improves the models' capabilities. Linear readouts transfer well across experimental assays and genes, suggesting that models capture functional patterns beyond the data used to fit individual predictors. At the same time, strong prediction of average effects can conceal weaker prediction of context-specific effects, and accurate prediction of combined mutation effects does not imply accurate prediction of their interactions. In design tasks, model predictions can reduce the number of candidates needed to find a desired response, but still leave substantial room for better design choices, particularly for context-specific and multi-cell objectives. Our benchmark reveals that genomic models now display signs of general utility but have yet to saturate on performance in even simple tasks.

  • 9 authors
·
Nov 2 2

LOCI: Spatial Linear Memory for Streaming World Models

When a camera revisits a previously observed region, a video world model should reproduce what was there before. This requires both remembering past observations and retrieving the right one for the current viewpoint. Key-value caches preserve visual detail but grow with video length; recurrent memory is compact but compresses history into a fixed-size state, so individual past observations are no longer directly accessible. We introduce LOCI, a hybrid spatial-memory architecture that keeps both representations. In half of the transformer blocks, main attention keeps a key-value cache of past observations; in the other half, it is restricted to the current chunk and complemented by a recurrent linear-attention memory whose reads and writes are conditioned on projective camera geometry, so viewpoint enters both memory addressing and stored content. Recurrent readouts flow into subsequent cache-backed blocks and supply their queries with accumulated scene context. On the public MIND memory benchmark and on held-out recorded trajectories, LOCI reproduces revisited content more faithfully than representative world models and a same-recipe full-softmax model; with full history, it lowers peak memory at equal length by about 30% relative to full softmax. With a bounded bank of retained observations, it streams long videos at constant memory and remains more faithful than full softmax under the same budget.

Adaptive Depth in Looped Transformers: Diagnosing Learned Halting Gates and Trajectory Readouts

Looped Transformers increase test-time computation by repeatedly applying a shared recurrent block. Learned halting objectives in looped Transformers typically use a single exit distribution both as the inference-time stopping rule and as the training-time weighting of per-depth losses. This entangles exit selection with trajectory formation: the gate not only chooses which recurrent state to use, but also determines how strongly each intermediate state is supervised. Consequently, poor adaptive-compute performance can arise from the readout, the induced trajectory, or their interaction. We study adaptive depth in looped Transformers through this trajectory--readout lens, across controlled synthetic tasks (modular arithmetic and binary parity) and large-scale Ouro-1.4B and 2.6B checkpoints. We find that fixed-prior depth supervision, which shapes the trajectory without an input-dependent halting policy, produces difficulty-aware trajectories whose intermediate states expose useful stopping signals, and that simple post-hoc confidence readouts often match or outperform learned linear and MLP gates. Fitting gates on frozen trajectories localizes the failure: it appears to stem mainly from the trajectory induced by joint gate training rather than from limited gate expressivity. The same pattern is present in Ouro evaluations, where pretrained ponder gates are competitive but not uniformly Pareto-optimal, and measured latency confirms that the resulting reductions in average exit depth translate into practical inference-time savings. Our systematic diagnostic evaluation reframes adaptive depth in looped Transformers as a joint problem of trajectory formation and exit readout, rather than gate learning alone, highlighting a distinction that prior learned-halting work has often left implicit.

  • 3 authors
·
Jul 7

A Tour of Convolutional Networks Guided by Linear Interpreters

Convolutional networks are large linear systems divided into layers and connected by non-linear units. These units are the "articulations" that allow the network to adapt to the input. To understand how a network manages to solve a problem we must look at the articulated decisions in entirety. If we could capture the actions of non-linear units for a particular input, we would be able to replay the whole system back and forth as if it was always linear. It would also reveal the actions of non-linearities because the resulting linear system, a Linear Interpreter, depends on the input image. We introduce a hooking layer, called a LinearScope, which allows us to run the network and the linear interpreter in parallel. Its implementation is simple, flexible and efficient. From here we can make many curious inquiries: how do these linear systems look like? When the rows and columns of the transformation matrix are images, how do they look like? What type of basis do these linear transformations rely on? The answers depend on the problems presented, through which we take a tour to some popular architectures used for classification, super-resolution (SR) and image-to-image translation (I2I). For classification we observe that popular networks use a pixel-wise vote per class strategy and heavily rely on bias parameters. For SR and I2I we find that CNNs use wavelet-type basis similar to the human visual system. For I2I we reveal copy-move and template-creation strategies to generate outputs.

  • 4 authors
·
Aug 14, 2019

How Much Does a Reasoning Summary Reveal? An Observability Ladder for Large Language Models

Large language models often show users a final response and a short reasoning summary while the full reasoning trace stays hidden. We introduce an observability ladder that holds each completed run fixed and varies only what a reader inspects to judge whether the answer is correct: the response, a self-summary the model writes from the trace, the trace itself, and internal signals, each with and without the prompt. Across three benchmarks and five open-weight Qwen3 and gpt-oss models, we train matched linear correctness predictors on each access level. Without the prompt, summaries carry most of the trace's ranking signal (mean AUROC 0.774 versus 0.813) and add +0.156 over the response alone. With the prompt visible, the summary's gain collapses to +0.019, while the trace still adds +0.041. Even at equal length, the trace's last words predict correctness as well as summaries, or slightly better, and carry denser and more discriminative uncertainty and self-correction cues. On MMLU-Pro questions with both correct and incorrect runs, linear summary readers are near chance and trace readers retain only modest signal, both with and without the prompt (prompt-withheld AUROC 0.503-0.545 versus 0.544-0.590). With the prompt withheld, a GPT-5-mini reader recovers substantially more signal from both summaries and traces on gpt-oss-20b, and even then the trace keeps a small +0.034 advantage. Much of the linear readers' trace signal is associated with length. In the common case where users already hold the prompt, summaries are less helpful than the full trace for monitoring correctness. Monitorability is thus a joint property of the display and the reader, so any monitorability claim, including for faithfulness, should specify both.

  • 6 authors
·
Aug 2

The Right Answer, the Wrong Direction: Why Transformers Fail at Counting and How to Fix It

Large language models often fail at simple counting tasks, even when the items to count are explicitly present in the prompt. We investigate whether this failure occurs because transformers do not represent counts internally, or because they cannot convert those representations into the correct output tokens. Across three model families, Pythia, Qwen3, and Mistral, ranging from 0.4B to 14B parameters, we find strong evidence for the second explanation. Linear probes recover the correct count from intermediate layers with near-perfect accuracy (R^2>0.99), showing that the information is present. However, the internal directions that encode counts are nearly orthogonal to the output-head rows for digit tokens (|cos|leq0.032). In other words, the model stores the count in a form that the digit logits do not naturally read out. We localize this failure with two interventions. Updating only the digit rows of the output head (36,864 parameters) substantially improves constrained next-token digit prediction (60.7 to 100.0% across four tasks), but it does not fix autoregressive generation. By contrast, a small LoRA intervention on attention Q/V weights (7.67M parameters) improves upstream routing and achieves 83.1% +/- 7.2% in true greedy autoregressive generation. Logit-lens measurements confirm the mechanism: the correct digit's vocabulary rank drops from 55,980 to 1, a 50,000x improvement. Additional norm, logit-lens, and cross-task analyses show that the bottleneck generalizes across character counting, addition, and list length, while remaining absent from broader multi-step reasoning benchmarks, including MMLU, GSM8K, and DROP. These results identify counting failure as a geometric readout bottleneck rather than a failure of internal representation: the model knows the count but the output pathway is geometrically misaligned with the tokens needed to express it.

  • 1 authors
·
May 4

Éclair -- Extracting Content and Layout with Integrated Reading Order for Documents

Optical Character Recognition (OCR) technology is widely used to extract text from images of documents, facilitating efficient digitization and data retrieval. However, merely extracting text is insufficient when dealing with complex documents. Fully comprehending such documents requires an understanding of their structure -- including formatting, formulas, tables, and the reading order of multiple blocks and columns across multiple pages -- as well as semantic information for detecting elements like footnotes and image captions. This comprehensive understanding is crucial for downstream tasks such as retrieval, document question answering, and data curation for training Large Language Models (LLMs) and Vision Language Models (VLMs). To address this, we introduce \'Eclair, a general-purpose text-extraction tool specifically designed to process a wide range of document types. Given an image, \'Eclair is able to extract formatted text in reading order, along with bounding boxes and their corresponding semantic classes. To thoroughly evaluate these novel capabilities, we introduce our diverse human-annotated benchmark for document-level OCR and semantic classification. \'Eclair achieves state-of-the-art accuracy on this benchmark, outperforming other methods across key metrics. Additionally, we evaluate \'Eclair on established benchmarks, demonstrating its versatility and strength across several evaluation standards.

  • 11 authors
·
Feb 6, 2025 3

Sparse Readout Prism: Explaining Logit-Lens Scores in Features Instead of Tokens

A language model's prediction of its next token develops across layers, and lens methods track this process by decoding intermediate hidden states into tokens. But a lens reading reflects both the hidden state and the readout (the unembedding matrix) used to decode it. Many lenses are fit on a corpus, and we show that two lenses differing only in their fitting corpus can report different tokens for the same hidden states. We call this dependence corpus conditionality. To examine readout structure independently of the fitting corpus, we introduce Sparse Readout Prism (SRP), which decomposes the readout using only its weights and expresses any token logit or logit difference as a sum of contributions from sparse readout features. This reveals readout features as a new unit of analysis for lens readings, exposing structure that token identities can obscure and enabling comparisons across tokens, contexts, layers, and lenses. Replacing the original readout with SRP's sparse approximation reconstructs 8.9-17.3 percentage points more of the tested logit differences than the strongest of six baselines built on geometric relations among readout rows. Ablating features shifts logit differences in proportion to their SRP contributions. Although token readings vary with the fitting corpus, the dominant readout feature remains stable. Because SRP uses no corpus in its construction, it provides a control independent of the fitting corpus for lens analyses.

  • 4 authors
·
Aug 31 2

Learning to Read Out: Unembedding Dynamics in Language Model Pretraining

When does a language model acquire a capability? Developmental studies usually answer this by tracking when models start producing the correct token. But that prediction passes through the unembedding matrix, or readout, which is itself still being learned during pretraining. We show that a model's hidden states can encode task information before its own readout expresses it, so timelines read from outputs conflate what the model encodes with what its readout expresses. To track the readout directly, we introduce parameter-trajectory crosscoding, which fits one sparse dictionary to every token's readout row at every checkpoint. Unlike crosscoders on activations, it needs only checkpoint weights. We use it to locate a narrow early window, 0.4-1.1% of the way through Pythia's pretraining, in which the readout reorganizes and WordNet word categories become decodable from its rows. By then, linear probes on the hidden states already decode task information that the model's own outputs do not yet show. To test whether such gaps depend on how fast the readout learns, we pretrain small models from scratch that differ only in the readout's learning rate. We find that raising it makes the readout develop earlier and the gap close sooner, with little effect on final loss. Together, these results imply that early in training, where many developmental transitions are dated, a behavioral date can reflect when the readout learns to express task information and not when the model learns it.

  • 6 authors
·
Oct 13 2

Do Vision-Language Models Measure Up? Benchmarking Visual Measurement Reading with MeasureBench

Reading measurement instruments is effortless for humans and requires relatively little domain expertise, yet it remains surprisingly challenging for current vision-language models (VLMs) as we find in preliminary evaluation. In this work, we introduce MeasureBench, a benchmark on visual measurement reading covering both real-world and synthesized images of various types of measurements, along with an extensible pipeline for data synthesis. Our pipeline procedurally generates a specified type of gauge with controllable visual appearance, enabling scalable variation in key details such as pointers, scales, fonts, lighting, and clutter. Evaluation on popular proprietary and open-weight VLMs shows that even the strongest frontier VLMs struggle measurement reading in general. A consistent failure mode is indicator localization: models can read digits or labels but misidentify the key positions of pointers or alignments, leading to big numeric errors despite plausible textual reasoning. We have also conducted preliminary experiments with reinforcement learning over synthetic data, and find encouraging results on in-domain synthetic subset but less promising for real-world images. Our analysis highlights a fundamental limitation of current VLMs in fine-grained spatial grounding. We hope this resource can help future advances on visually grounded numeracy and precise spatial perception of VLMs, bridging the gap between recognizing numbers and measuring the world.

Observable Propagation: A Data-Efficient Approach to Uncover Feature Vectors in Transformers

A key goal of current mechanistic interpretability research in NLP is to find linear features (also called "feature vectors") for transformers: directions in activation space corresponding to concepts that are used by a given model in its computation. Present state-of-the-art methods for finding linear features require large amounts of labelled data -- both laborious to acquire and computationally expensive to utilize. In this work, we introduce a novel method, called "observable propagation" (in short: ObsProp), for finding linear features used by transformer language models in computing a given task -- using almost no data. Our paradigm centers on the concept of observables, linear functionals corresponding to given tasks. We then introduce a mathematical theory for the analysis of feature vectors: we provide theoretical motivation for why LayerNorm nonlinearities do not affect the direction of feature vectors; we also introduce a similarity metric between feature vectors called the coupling coefficient which estimates the degree to which one feature's output correlates with another's. We use ObsProp to perform extensive qualitative investigations into several tasks, including gendered occupational bias, political party prediction, and programming language detection. Our results suggest that ObsProp surpasses traditional approaches for finding feature vectors in the low-data regime, and that ObsProp can be used to better understand the mechanisms responsible for bias in large language models. Code for experiments can be found at github.com/jacobdunefsky/ObservablePropagation.

  • 2 authors
·
Dec 26, 2023

LayoutLLM: Layout Instruction Tuning with Large Language Models for Document Understanding

Recently, leveraging large language models (LLMs) or multimodal large language models (MLLMs) for document understanding has been proven very promising. However, previous works that employ LLMs/MLLMs for document understanding have not fully explored and utilized the document layout information, which is vital for precise document understanding. In this paper, we propose LayoutLLM, an LLM/MLLM based method for document understanding. The core of LayoutLLM is a layout instruction tuning strategy, which is specially designed to enhance the comprehension and utilization of document layouts. The proposed layout instruction tuning strategy consists of two components: Layout-aware Pre-training and Layout-aware Supervised Fine-tuning. To capture the characteristics of document layout in Layout-aware Pre-training, three groups of pre-training tasks, corresponding to document-level, region-level and segment-level information, are introduced. Furthermore, a novel module called layout chain-of-thought (LayoutCoT) is devised to enable LayoutLLM to focus on regions relevant to the question and generate accurate answers. LayoutCoT is effective for boosting the performance of document understanding. Meanwhile, it brings a certain degree of interpretability, which could facilitate manual inspection and correction. Experiments on standard benchmarks show that the proposed LayoutLLM significantly outperforms existing methods that adopt open-source 7B LLMs/MLLMs for document understanding. The training data of the LayoutLLM is publicly available at https://github.com/AlibabaResearch/AdvancedLiterateMachinery/tree/main/DocumentUnderstanding/LayoutLLM

  • 6 authors
·
Apr 8, 2024

Tuning Pre-trained Model via Moment Probing

Recently, efficient fine-tuning of large-scale pre-trained models has attracted increasing research interests, where linear probing (LP) as a fundamental module is involved in exploiting the final representations for task-dependent classification. However, most of the existing methods focus on how to effectively introduce a few of learnable parameters, and little work pays attention to the commonly used LP module. In this paper, we propose a novel Moment Probing (MP) method to further explore the potential of LP. Distinguished from LP which builds a linear classification head based on the mean of final features (e.g., word tokens for ViT) or classification tokens, our MP performs a linear classifier on feature distribution, which provides the stronger representation ability by exploiting richer statistical information inherent in features. Specifically, we represent feature distribution by its characteristic function, which is efficiently approximated by using first- and second-order moments of features. Furthermore, we propose a multi-head convolutional cross-covariance (MHC^3) to compute second-order moments in an efficient and effective manner. By considering that MP could affect feature learning, we introduce a partially shared module to learn two recalibrating parameters (PSRP) for backbones based on MP, namely MP_{+}. Extensive experiments on ten benchmarks using various models show that our MP significantly outperforms LP and is competitive with counterparts at less training cost, while our MP_{+} achieves state-of-the-art performance.

  • 6 authors
·
Jul 21, 2023

Excess Separability: Nuisance-Controlled Residual-Stream Probing for Benchmark Contamination Detection

Benchmark contamination is diagnosed with n-gram overlap, likelihood-based membership inference, or canary strings, and each needs something usually unavailable: the training corpus, a well-chosen test statistic, or foresight at release. A recent alternative reads it off a linear probe on internal activations. We show the natural way to do this does not work, specify one that survives measurement, then find that the correction making it work carries more variance than the null it is tested against. The protocol reports a zero-sum contrast on the depth profile of probe accuracy, recentred on a level-matched placebo baseline, tested against a label-permutation null, with the reference set twice the size of the suspect set. Each choice replaces a simpler alternative we rejected on measurement. Reporting the level of excess separability rather than its shape makes the false positive rate track the size of the analyst's own control set, 0.03 to 0.99 under a true null. Contrasting against a flat depth profile rejects a true null 0.72 of the time when surface decodability rises with depth, and loses all power when it falls. On real transformers the protocol fails a test the simulations did not pose. The recentring subtracts an estimate, and the permutation null holds it fixed. Re-estimated across split seeds on four audits of contaminated checkpoints, its standard deviation is 1.30 to 1.56 times the null's own in every arm: what is subtracted to remove a bias is more variable than what it corrects. The one nominally significant result, p = 0.0075, becomes 0.0745 once that variance is propagated, and no verdict is issued. The simulations missed this because their surface key is the covariate driving item variation; on real text it is a proxy, and degrading key quality in simulation reproduces it. We add a companion measurement and a widened null. No arm shows contamination.

  • 1 authors
·
Aug 15

Reading Order Inference for Complex Document Layouts

Reading order inference remains a critical bottleneck in the digitization of complex historical manuscripts, where pages contain multiple spatially interleaved reading streams, the canonical example being the Glossa Ordinaria layout, in which a central text is surrounded by commentaries that wrap around it in non-rectangular, non-convex regions. We present a training-free, graph-based framework: each OCR text line becomes a node in a directed candidate-transition graph, edges are scored by a weighted additive ensemble of two lightweight language-model signals (causal language model conditional likelihood and BERT next-sentence prediction, NSP; a third sentence-embedding signal was evaluated but did not improve reading order), and the global reading order is recovered as a degree-constrained directed path cover. To avoid the cascading "edge-theft" failures of greedy edge selection, we propose a max-regret inference rule that prioritizes commitments with high opportunity cost. We evaluate on synthetic Glossa Ordinaria grid layouts, on 23 ALTO page geometries (10 historical source pages plus mirrored and flipped variants), and on a 140-page multi-column English subset of OmniDocBench, comparing our method against the canonical recursive XY-cut (PaddleOCR PP-StructureV3) and two LayoutReader variants (layout-only and text+layout) on identical inputs. On wrap-around Glossa layouts our method recovers 95% of ground-truth successor edges on average vs. XY-cut's 50%; on the OmniDocBench multi-column subset it reaches 88% macro edge accuracy versus XY-cut's 75% and LayoutReader's 25%. The LayoutReader baselines transfer poorly due to a word-level vs. line-level granularity mismatch. We additionally verify mirror-invariance under horizontal and vertical page reflections: Our method changes by less than 1 percentage point, classical XY-cut by 2 points, and LayoutReader-T by up to 8 points.

  • 7 authors
·
Jun 30

Liger: Linearizing Large Language Models to Gated Recurrent Structures

Transformers with linear recurrent modeling offer linear-time training and constant-memory inference. Despite their demonstrated efficiency and performance, pretraining such non-standard architectures from scratch remains costly and risky. The linearization of large language models (LLMs) transforms pretrained standard models into linear recurrent structures, enabling more efficient deployment. However, current linearization methods typically introduce additional feature map modules that require extensive fine-tuning and overlook the gating mechanisms used in state-of-the-art linear recurrent models. To address these issues, this paper presents Liger, short for Linearizing LLMs to gated recurrent structures. Liger is a novel approach for converting pretrained LLMs into gated linear recurrent models without adding extra parameters. It repurposes the pretrained key matrix weights to construct diverse gating mechanisms, facilitating the formation of various gated recurrent structures while avoiding the need to train additional components from scratch. Using lightweight fine-tuning with Low-Rank Adaptation (LoRA), Liger restores the performance of the linearized gated recurrent models to match that of the original LLMs. Additionally, we introduce Liger Attention, an intra-layer hybrid attention mechanism, which significantly recovers 93\% of the Transformer-based LLM at 0.02\% pre-training tokens during the linearization process, achieving competitive results across multiple benchmarks, as validated on models ranging from 1B to 8B parameters. Code is available at https://github.com/OpenSparseLLMs/Linearization.

  • 5 authors
·
Mar 3, 2025 2

Gathered, Not Admitted: How Attention Brings a Latent Variable into Verbalizable Form

Language models hold latent quantities in a form they can report on, and more of a quantity is present in that form when the task requires reusing it flexibly. What causes a representation to enter that form is open, and the word workspace invites an admission story: a gate that decides what gets in. Testing it on open-weight models with Jacobian lenses, over a benchmark whose five arms share an identical context, we find no gate where it predicts one. Demand raises a concept's lens visibility beyond what applying an operator to a supplied value produces: +0.050 [+0.045, +0.057] in percentile rank on our primary checkpoint, positive on all four we measure, though that arm answers at ceiling and the accuracymatched contrast is stronger under that readout. At the same time one shared linear map decodes the variable from every arm, the control included, at 6.4-9.0x its selection-corrected floor. What produces the later readable form at the queried position is attention-mediated gathering inside a mid-depth window: separating patch depth from readout depth puts transport there at least 17x above anywhere shallower under non-saturating readouts, with no tested MLP output contributing positively inside it. Under the saturating percentile rank the same grid does not localise the window, which is a fact about that measure. An arm that needs the variable for nothing concentrates sevenfold less, so the window is demand-specific. That window has two measured edges, a survival failure below and destruction above, and it falls at the same fractional depth in a 64-layer hybrid and a 62-layer dense model from another family. We localise where the variable is installed and read, not the route from the passage, which transports nothing. But the readout is not a calibrated measure of use: three components move it to within 12% of one another and differ 7.4x in what they do to the answer.

Leveraging Morphology for Historical Script Metrological Analysis

Advances in handwritten text recognition have enabled large-scale transcription of historical documents, but still provide limited access to interpretable visual measurements for paleography, the study of historical scripts. In this paper, our main insight is that morphological script analysis, in particular the capacity to learn character prototypes from line-level transcriptions, enables the definition of scalable, meaningful, and stable paleographic measurements. More precisely, we leverage a transformer-based detection architecture together with a prototype-based line reconstruction module to learn prototypical characters and their occurrence, deformation, and positioning. Our contributions are twofold. First, we introduce a deep architecture and learning methodology that enables efficient character modeling with only line-level transcription supervision, significantly improving over the Learnable Typewriter baseline and enabling accurate character bounding box prediction, unlocking its potential for paleographic measurements. Second, we introduce and demonstrate the paleographical relevance of automatic measurements enabled by our architecture for characters, bi-grams, and spaces between graphical units. For this demonstration, we extend the annotations of the codex Paris, BnF, fr. 2813, commissioned in the late fourteenth century by Charles V and copied by four hands, to 160 pages. We visualize our measurements over these pages, showing how they enable us not only to differentiate graphical profiles, but also to discover and analyze subtle variations. This case study outlines the scalability of our approach and its frugality in terms of required training data, since a single column of text is sufficient to compute our measurements on each of the 160 pages. Data and code are publicly available at: https://malamatenia.github.io/morphology4metrology-analysis.

Parallelizing Linear Transformers with the Delta Rule over Sequence Length

Transformers with linear attention (i.e., linear transformers) and state-space models have recently been suggested as a viable linear-time alternative to transformers with softmax attention. However, these models still underperform transformers especially on tasks that require in-context retrieval. While more expressive variants of linear transformers which replace the additive outer-product update in linear transformers with the delta rule have been found to be more effective at associative recall, existing algorithms for training such models do not parallelize over sequence length and are thus inefficient to train on modern hardware. This work describes a hardware-efficient algorithm for training linear transformers with the delta rule, which exploits a memory-efficient representation for computing products of Householder matrices. This algorithm allows us to scale up DeltaNet to standard language modeling settings. We train a 1.3B model for 100B tokens and find that it outperforms recent linear-time baselines such as Mamba and GLA in terms of perplexity and zero-shot performance on downstream tasks (including on tasks that focus on recall). We also experiment with two hybrid models which combine DeltaNet layers with (1) sliding-window attention layers every other layer or (2) two global attention layers, and find that these hybrid models outperform strong transformer baselines.

  • 5 authors
·
Jun 10, 2024 2

Lightning Attention-2: A Free Lunch for Handling Unlimited Sequence Lengths in Large Language Models

Linear attention is an efficient attention mechanism that has recently emerged as a promising alternative to conventional softmax attention. With its ability to process tokens in linear computational complexities, linear attention, in theory, can handle sequences of unlimited length without sacrificing speed, i.e., maintaining a constant training speed for various sequence lengths with a fixed memory consumption. However, due to the issue with cumulative summation (cumsum), current linear attention algorithms cannot demonstrate their theoretical advantage in a causal setting. In this paper, we present Lightning Attention-2, the first linear attention implementation that enables linear attention to realize its theoretical computational benefits. To achieve this, we leverage the thought of tiling, separately handling the intra-block and inter-block components in linear attention calculation. Specifically, we utilize the conventional attention computation mechanism for the intra-blocks and apply linear attention kernel tricks for the inter-blocks. A tiling technique is adopted through both forward and backward procedures to take full advantage of the GPU hardware. We implement our algorithm in Triton to make it IO-aware and hardware-friendly. Various experiments are conducted on different model sizes and sequence lengths. Lightning Attention-2 retains consistent training and inference speed regardless of input sequence length and is significantly faster than other attention mechanisms. The source code is available at https://github.com/OpenNLPLab/lightning-attention.

  • 6 authors
·
Jan 9, 2024 3

Representation Redistribution in Sparse Autoencoders

Sparse autoencoders (SAEs) decompose language model activations into sparse features, but prompt transformations designed to preserve the underlying request can redistribute activity across them. A feature change observed on one transformed prompt need not recur, and even a recurring change need not affect a downstream computation. We introduce the redistribution sensitivity score (RSS), which identifies large feature responses that recur in a consistent direction, and evaluate the resulting supports on variants excluded from selection. Across 27 pretrained SAEs spanning eight language models, the tested prompt transformations produce a reproducible redistribution profile on these excluded variants. We then separate recurring representation change from signed readout contribution and decision failure. For a fixed linear readout, an exact decomposition shows how response magnitude, readout coefficients, directional alignment, and the clean margin determine downstream consequences. In two frozen safety readouts, combining RSS support erosion with the full clean margin yields recurrent failure AUROCs of 0.935 and 0.958 using median supports of 20 and 19 features, compared with 0.965 and 0.964 using full erosion. RSS therefore provides a way to identify recurring sparse representation changes and quantify their contribution to a downstream readout without equating representation change with failure. Code is available at https://github.com/OpenSAE/Redistribution-Sensitivity-Score

OpenSAE OpenSAE
·
Oct 14 2

Logics-Parsing Technical Report

Recent advances in Large Vision-Language models (LVLM) have spurred significant progress in document parsing task. Compared to traditional pipeline-based methods, end-to-end paradigms have shown their excellence in converting PDF images into structured outputs through integrated Optical Character Recognition (OCR), table recognition, mathematical formula recognition and so on. However, the absence of explicit analytical stages for document layouts and reading orders limits the LVLM's capability in handling complex document types such as multi-column newspapers or posters. To address this limitation, we propose in this report Logics-Parsing: an end-to-end LVLM-based model augmented with reinforcement learning. Our model incorporates meticulously designed reward mechanisms to optimize complex layout analysis and reading order inference. In addition, we expand the model's versatility by incorporating diverse data types such as chemical formulas and handwritten Chinese characters into supervised fine-tuning. Finally, to enable rigorous evaluation of our approach, we introduce LogicsParsingBench, a curated set of 1,078 page-level PDF images spanning nine major categories and over twenty sub-categories, which will be released later. Comprehensive experiments conducted on LogicsParsingBench have validated the efficacy and State-of-the-art (SOTA) performance of our proposed model across diverse document analysis scenarios. Project Page: https://github.com/alibaba/Logics-Parsing

  • 10 authors
·
Sep 24, 2025 2

The Answer Knows Where to Look: Zooming before MLLMs Answer under Visual-Token Budgets

Multimodal large language models (MLLMs) read images through visual tokens, and under the small per-image budgets that efficient deployment requires, the fine text of documents, charts and infographics becomes illegible. Zooming in recovers the evidence, but the region must be chosen before the model answers. We find that MLLMs know where the evidence is, but not in a form that can be read before they answer: the answer tokens localize it from the middle layers on, whereas the attention available before answering does so only in the top layers, at a depth that varies across models, and diffusely. Supervising the pre-answer attention to point degrades reading, and the benefit of zooming is governed by each image's information gap. Building on these findings, we introduce ours, which lets an MLLM look where its answer would. A dedicated look token, processed in a single prefill and kept out of the answering pass, learns in hindsight to attend as the model's own correct answers do, extracting this knowledge into a concentrated pointer before any answer exists. Its hidden state then selects how to look, from no zoom to crops, square windows, windows that adapt to the pointer and foveated warps, supervised by the counterfactual outcome of every view. ours needs no box annotations, per-model layer search, external localizers or generation before the answer. On Qwen3-VL at three scales and five text-rich benchmarks, it surpasses the strongest baseline by 4.8-9.1 points at 98 visual tokens per view and attention-guided zooming by 11.1-17.0 points, while running faster than attention-guided and grounding-based zooming.

  • 3 authors
·
Oct 22

Understanding Linear Probing then Fine-tuning Language Models from NTK Perspective

The two-stage fine-tuning (FT) method, linear probing (LP) then fine-tuning (LP-FT), outperforms linear probing and FT alone. This holds true for both in-distribution (ID) and out-of-distribution (OOD) data. One key reason for its success is the preservation of pre-trained features, achieved by obtaining a near-optimal linear head during LP. However, despite the widespread use of large language models, there has been limited exploration of more complex architectures such as Transformers. In this paper, we analyze the training dynamics of LP-FT for classification tasks on the basis of the neural tangent kernel (NTK) theory. Our analysis decomposes the NTK matrix into two components. This decomposition highlights the importance of the linear head norm alongside the prediction accuracy at the start of the FT stage. We also observe a significant increase in the linear head norm during LP, which stems from training with the cross-entropy (CE) loss. This increase in the linear head norm effectively reduces changes in learned features. Furthermore, we find that this increased norm can adversely affect model calibration, which can be corrected using temperature scaling. Additionally, we extend our analysis with the NTK to the low-rank adaptation (LoRA) method and validate its effectiveness. Our experiments using a Transformer-based model on multiple natural language processing datasets confirm our theoretical analysis. Our study demonstrates the effectiveness of LP-FT for fine-tuning language models. Code is available at https://github.com/tom4649/lp-ft_ntk.

  • 2 authors
·
Oct 21, 2024

When Should a Network Emit Geometry, and When Should It Detect It? Readout, Reconciliation, and Representation in Floorplan Vectorization

A network trained to recover the walls, openings, and rooms of a rasterized floorplan can produce its output in two ways: by emitting the geometry as an autoregressive coordinate sequence, or by detecting it on dense junction and centerline heatmaps and assembling a graph. We compare the two readouts on the same trained network. On real scans (CubiCasa5K) detection is better on every wall measure (+2.7 wall F1 at tolerance 0.05, +5.1 at 0.015; paired bootstrap intervals exclude zero), and reading an opening heatmap the decoder never used raises opening F1 by 2.6x without retraining. Within real scans the readout's advantage grows with plan size and reverses on small plans; on clean vector renders sequence decoding is better by 5 to 8 points where its training covered the render style, while under full domain shift the readout, given calibrated thresholds, stays ahead; neither ink density nor plan size explains the reversal. With matched data and recipe, a room-centric system with a reconciliation step and a wall-first sequence model reach comparable wall quality, so the output representation matters less than is usually assumed. A prior from the other family helps at the output but not at the input: deterministic fusion of the two outputs raises wall F1 by 7 points, whereas conditioning one model on the other's output gives no gain in three forms, including two ground-truth-content controls. We also provide an edit-cost metric that scores a draft by the human work needed to correct it, corrected CubiCasa5K annotations, and ResPlan-FP, a CC BY 4.0 benchmark of 16,998 plans with frozen splits and three baseline tracks. Code, the benchmark, and the corrected annotations are available at https://github.com/Cyprinus12138/fpvec-lab

  • 1 authors
·
Aug 25

LiT: Delving into a Simplified Linear Diffusion Transformer for Image Generation

In commonly used sub-quadratic complexity modules, linear attention benefits from simplicity and high parallelism, making it promising for image synthesis tasks. However, the architectural design and learning strategy for linear attention remain underexplored in this field. In this paper, we offer a suite of ready-to-use solutions for efficient linear diffusion Transformers. Our core contributions include: (1) Simplified Linear Attention using few heads, observing the free-lunch effect of performance without latency increase. (2) Weight inheritance from a fully pre-trained diffusion Transformer: initializing linear Transformer using pre-trained diffusion Transformer and loading all parameters except for those related to linear attention. (3) Hybrid knowledge distillation objective: using a pre-trained diffusion Transformer to help the training of the student linear Transformer, supervising not only the predicted noise but also the variance of the reverse diffusion process. These guidelines lead to our proposed Linear Diffusion Transformer (LiT), an efficient text-to-image Transformer that can be deployed offline on a laptop. Experiments show that in class-conditional 256*256 and 512*512 ImageNet benchmark LiT achieves highly competitive FID while reducing training steps by 80% and 77% compared to DiT. LiT also rivals methods based on Mamba or Gated Linear Attention. Besides, for text-to-image generation, LiT allows for the rapid synthesis of up to 1K resolution photorealistic images. Project page: https://techmonsterwang.github.io/LiT/.

  • 15 authors
·
Jan 22, 2025

MoM: Linear Sequence Modeling with Mixture-of-Memories

Linear sequence modeling methods, such as linear attention, state space modeling, and linear RNNs, offer significant efficiency improvements by reducing the complexity of training and inference. However, these methods typically compress the entire input sequence into a single fixed-size memory state, which leads to suboptimal performance on recall-intensive downstream tasks. Drawing inspiration from neuroscience, particularly the brain's ability to maintain robust long-term memory while mitigating "memory interference", we introduce a novel architecture called Mixture-of-Memories (MoM). MoM utilizes multiple independent memory states, with a router network directing input tokens to specific memory states. This approach greatly enhances the overall memory capacity while minimizing memory interference. As a result, MoM performs exceptionally well on recall-intensive tasks, surpassing existing linear sequence modeling techniques. Despite incorporating multiple memory states, the computation of each memory state remains linear in complexity, allowing MoM to retain the linear-complexity advantage during training, while constant-complexity during inference. Our experimental results show that MoM significantly outperforms current linear sequence models on downstream language tasks, particularly recall-intensive tasks, and even achieves performance comparable to Transformer models. The code is released at https://github.com/OpenSparseLLMs/MoM and is also released as a part of https://github.com/OpenSparseLLMs/Linear-MoE.

  • 5 authors
·
Feb 19, 2025 2

LoLCATs: On Low-Rank Linearizing of Large Language Models

Recent works show we can linearize large language models (LLMs) -- swapping the quadratic attentions of popular Transformer-based LLMs with subquadratic analogs, such as linear attention -- avoiding the expensive pretraining costs. However, linearizing LLMs often significantly degrades model quality, still requires training over billions of tokens, and remains limited to smaller 1.3B to 7B LLMs. We thus propose Low-rank Linear Conversion via Attention Transfer (LoLCATs), a simple two-step method that improves LLM linearizing quality with orders of magnitudes less memory and compute. We base these steps on two findings. First, we can replace an LLM's softmax attentions with closely-approximating linear attentions, simply by training the linear attentions to match their softmax counterparts with an output MSE loss ("attention transfer"). Then, this enables adjusting for approximation errors and recovering LLM quality simply with low-rank adaptation (LoRA). LoLCATs significantly improves linearizing quality, training efficiency, and scalability. We significantly reduce the linearizing quality gap and produce state-of-the-art subquadratic LLMs from Llama 3 8B and Mistral 7B v0.1, leading to 20+ points of improvement on 5-shot MMLU. Furthermore, LoLCATs does so with only 0.2% of past methods' model parameters and 0.4% of their training tokens. Finally, we apply LoLCATs to create the first linearized 70B and 405B LLMs (50x larger than prior work). When compared with prior approaches under the same compute budgets, LoLCATs significantly improves linearizing quality, closing the gap between linearized and original Llama 3.1 70B and 405B LLMs by 77.8% and 78.1% on 5-shot MMLU.

  • 8 authors
·
Oct 14, 2024

OpenKD: Opening Prompt Diversity for Zero- and Few-shot Keypoint Detection

Exploiting the foundation models (e.g., CLIP) to build a versatile keypoint detector has gained increasing attention. Most existing models accept either the text prompt (e.g., ``the nose of a cat''), or the visual prompt (e.g., support image with keypoint annotations), to detect the corresponding keypoints in query image, thereby, exhibiting either zero-shot or few-shot detection ability. However, the research on taking multimodal prompt is still underexplored, and the prompt diversity in semantics and language is far from opened. For example, how to handle unseen text prompts for novel keypoint detection and the diverse text prompts like ``Can you detect the nose and ears of a cat?'' In this work, we open the prompt diversity from three aspects: modality, semantics (seen v.s. unseen), and language, to enable a more generalized zero- and few-shot keypoint detection (Z-FSKD). We propose a novel OpenKD model which leverages multimodal prototype set to support both visual and textual prompting. Further, to infer the keypoint location of unseen texts, we add the auxiliary keypoints and texts interpolated from visual and textual domains into training, which improves the spatial reasoning of our model and significantly enhances zero-shot novel keypoint detection. We also found large language model (LLM) is a good parser, which achieves over 96% accuracy to parse keypoints from texts. With LLM, OpenKD can handle diverse text prompts. Experimental results show that our method achieves state-of-the-art performance on Z-FSKD and initiates new ways to deal with unseen text and diverse texts. The source code and data are available at https://github.com/AlanLuSun/OpenKD.

  • 3 authors
·
Sep 29, 2024

Evaluating Multimodal Large Language Models on Vertically Written Japanese Text

Multimodal Large Language Models (MLLMs) have seen rapid advances in recent years and are now being applied to visual document understanding tasks. They are expected to process a wide range of document images across languages, including Japanese. Understanding documents from images requires models to read what are written in them. Since some Japanese documents are written vertically, support for vertical writing is essential. However, research specifically focused on vertically written Japanese text remains limited. In this study, we evaluate the reading capability of existing MLLMs on vertically written Japanese text. First, we generate a synthetic Japanese OCR dataset by rendering Japanese texts into images, and use it for both model fine-tuning and evaluation. This dataset includes Japanese text in both horizontal and vertical writing. We also create an evaluation dataset sourced from the real-world document images containing vertically written Japanese text. Using these datasets, we demonstrate that the existing MLLMs perform worse on vertically written Japanese text than on horizontally written Japanese text. Furthermore, we show that training MLLMs on our synthesized Japanese OCR dataset results in improving the performance of models that previously could not handle vertical writing. The datasets and code are publicly available https://github.com/llm-jp/eval_vertical_ja.

  • 3 authors
·
Nov 18, 2025

Periscope: Extending Frozen Language Models Beyond Their Context Window

A language model reads long text in one quadratic forward pass, stops at the context window, and loses accuracy with length before reaching it. We ask whether the read can be factorized when deciding over a finite set: which document is relevant, which option is supported, which passage is the evidence. Periscope, a training-free inference method, arranges the N chunks of a text on a K{times}K grid with K{=}lceilNrceil and asks a frozen model the same question about K local spans of consecutive chunks and K strided spans that sample the whole text, reading the log-odds of every answer at one token. Each answer takes its best local and strided score, and scoring every chunk by its two spans gives an evidence map at no further cost, whose peak is the chunk behind the answer. Every probe is about sc tokens for a text of s tokens and chunk size c, so a window of W tokens reaches W^{2}/c tokens at s^{1.5} cost. The map replaces the long read. On LongBench v2, reading only the K chunks the map ranks highest, 9k tokens, matches the same model's best window read across windows from 32k to 1M tokens, and on InfiniteBench, where the median context is 150k tokens, it leads the best window read by 5 points. The same map ranks BRIGHT's long-document corpora with the best NDCG@10 of six methods. Each call caches only one probe, so a 27B model reads 4.5M-token contexts on one 80GB GPU, where a single pass would need 296GB of cache. A long read then needs a GPU that holds the model, not one that holds the text.

MedRepBench: A Comprehensive Benchmark for Medical Report Interpretation

Medical report interpretation plays a crucial role in healthcare, enabling both patient-facing explanations and effective information flow across clinical systems. While recent vision-language models (VLMs) and large language models (LLMs) have demonstrated general document understanding capabilities, there remains a lack of standardized benchmarks to assess structured interpretation quality in medical reports. We introduce MedRepBench, a comprehensive benchmark built from 1,900 de-identified real-world Chinese medical reports spanning diverse departments, patient demographics, and acquisition formats. The benchmark is designed primarily to evaluate end-to-end VLMs for structured medical report understanding. To enable controlled comparisons, we also include a text-only evaluation setting using high-quality OCR outputs combined with LLMs, allowing us to estimate the upper-bound performance when character recognition errors are minimized. Our evaluation framework supports two complementary protocols: (1) an objective evaluation measuring field-level recall of structured clinical items, and (2) an automated subjective evaluation using a powerful LLM as a scoring agent to assess factuality, interpretability, and reasoning quality. Based on the objective metric, we further design a reward function and apply Group Relative Policy Optimization (GRPO) to improve a mid-scale VLM, achieving up to 6% recall gain. We also observe that the OCR+LLM pipeline, despite strong performance, suffers from layout-blindness and latency issues, motivating further progress toward robust, fully vision-based report understanding.

  • 5 authors
·
Aug 20, 2025

Near-Zero Token Embeddings Silently Stall Training in Gated Sequence Models

Among 291 surveyed open-weight language model repositories (280 distinct embedding tables), 52.6% of untied gated and hybrid checkpoints (20/38) contain reachable input embeddings with norms below 10^{-6}, compared with 0% of weight-tied models. Such near-zero rows can arise during pretraining when unseen rare or template tokens receive zero input gradients while AdamW weight decay shrinks untied embeddings. In tested Transformer configurations, non-initial positions or a BOS token prevent this failure mode. In gated sequence models (Mamba, Gated DeltaNet, xLSTM), a near-zero token can amplify input-embedding gradients by more than 30 orders of magnitude (up to 35). At zero input, current-token readout factors (SiLU gates or linear queries) vanish, suppressing historical-state readout. Residual RMS values can then fall below the square root of the RMSNorm floor across consecutive layers, causing Pre-RMSNorm to amplify backward gradients by up to 10^3 per layer. When a gradient entry exceeds 1.84 times 10^{19}, FP32 global-norm clipping in PyTorch, Hugging Face Trainer, and FSDP2 can overflow to infinity and zero the current batch's gradients. In Telugu continual pretraining of Nemotron-3-Nano-4B, this discards updates on approximately 20% of steps and leaves triggered rows frozen. We propose two remedies. For released checkpoints, GroupClip decouples input-embedding clipping using a 64-bit or rescaled norm; its rescaled implementation eliminates update loss and heals triggered rows in one step with negligible measured end-to-end overhead. For pretraining, GateFloor (SiLU(z) + δ, δin [0.01, 0.1]) keeps the gate positive at zero input, reducing near-zero gradients by 28 orders of magnitude in experiments up to 370M parameters, with perplexity comparable to the baseline.

  • 6 authors
·
Nov 2 2

LensVLM: Selective Context Expansion for Compressed Visual Representation of Text

Vision Language Models (VLMs) offer the exciting possibility of processing text as rendered images, bypassing the need for tokenizing the text into long token sequences. Since VLM image encoders map fixed-size images to a fixed number of visual tokens, varying rendering resolution provides a fine-grained compression knob. However, accuracy deteriorates quickly as compression increases: characters shrink below the vision encoder's effective resolution, making them indistinguishable. To address this, we propose LensVLM, an inference framework and post-training recipe that enables VLMs to scan compressed images, then selectively expand only the relevant images to their uncompressed form via learned tools. Building on Qwen3.5-9B-Base, LensVLM maintains accuracy comparable to the full-text upper bound at 4.3x effective compression and outperforms retrieval-based, text- and visual-compression baselines up to 10.1x effective compression across seven text QA benchmarks. LensVLM also generalizes to multimodal document and code understanding tasks, with the accuracy gain over baselines growing as compression increases. Our analysis validates this approach: training makes visual compression robust to rendering choices, and as compression grows the model increasingly relies on expanded content rather than unreliable visual reading. The analysis also yields practical tool-choice guidance: text expansion is preferable for rendered text, while high-resolution image expansion suits native documents whose layout cues carry task-relevant information.

  • 10 authors
·
May 6

Muir: Linear Attention with Sensitivity-Allocated Gating and Matched-Filter Readout

Linear attention compresses context into a fixed-size key-value state for linear-time training and constant-memory inference. Gated delta-rule models decay this state and erase its prediction for an incoming key before writing a new value; Gated DeltaNet-2 (GDN-2) generalizes this with channel-wise decay and decoupled, full-rank erase and write gates. However, we show that state updates are far less sensitive to erasure than to writes: key activation and unit normalization concentrate key energy onto a sparse subset of channels, whereas value writes scale all channels, so the erase gate can be parameterized at lower rank. Furthermore, slow-decaying state rows accumulate much larger norms than fast rows, dominating unweighted readout and forcing stronger write-time erasure to suppress interference. Guided by this analysis, we introduce Muir, which fuses all gates into a sensitivity-allocated low-rank projection, re-weights state rows with a matched-filter readout gate, and reinvests the saved parameters in a wider feed-forward network. Because standard chunkwise algorithms become numerically unstable at the large chunk sizes needed to saturate wide matrix units, we design a parallel update for stable, efficient training. Across 166M-1.34B parameters, Muir lowers perplexity by 1.8-2.0% over GDN-2 and 2.5-3.6% over Transformer, raises commonsense accuracy by up to 1.9 points, and improves extractive recall over GDN-2. At 1.34B, Muir outperforms both baselines on multi-hop and multi-needle recall, extrapolates 2,560x from its 4K training length to 10M-token streams without perplexity drift, and maintains near-100% passkey retrieval to 1M tokens with static readout. Muir achieves these gains while matching GDN-2 throughput, reaching its 100B-token validation loss 1.2x faster, and training 2.7x faster than Transformer at 32K.

google Google
·
Nov 5 19

Training-Free Acceleration for Document Parsing Vision-Language Model with Hierarchical Speculative Decoding

Document parsing is a fundamental task in multimodal understanding, supporting a wide range of downstream applications such as information extraction and intelligent document analysis. Benefiting from strong semantic modeling and robust generalization, VLM-based end-to-end approaches have emerged as the mainstream paradigm in recent years. However, these models often suffer from substantial inference latency, as they must auto-regressively generate long token sequences when processing long-form documents. In this work, motivated by the extremely long outputs and complex layout structures commonly found in document parsing, we propose a training-free and highly efficient acceleration method. Inspired by speculative decoding, we employ a lightweight document parsing pipeline as a draft model to predict batches of future tokens, while the more accurate VLM verifies these draft predictions in parallel. Moreover, we further exploit the layout-structured nature of documents by partitioning each page into independent regions, enabling parallel decoding of each region using the same draft-verify strategy. The final predictions are then assembled according to the natural reading order. Experimental results demonstrate the effectiveness of our approach: on the general-purpose OmniDocBench, our method provides a 2.42x lossless acceleration for the dots.ocr model, and achieves up to 4.89x acceleration on long-document parsing tasks. We will release our code to facilitate reproducibility and future research.

  • 18 authors
·
Feb 13

How High Is 0.6? Floors, Ceilings, and Headroom in Interpretability Probing

Probes are the workhorse of interpretability. If a model's hidden states predict a variable, the model is said to represent it. But a probe score has no fixed meaning. An R^2 of 0.6 may only reflect what the input already gives away, and the same score can mean different things on different data. We propose reading every probe score against two reference points: a floor, what a declared set of simple inputs already predicts, and a ceiling, what the full input can predict. The gap between them, the headroom, is the range in which a probe can show that a model computes something beyond the simple inputs. We prove that headroom vanishes in two ways: the target stops depending on a hidden variable the model must infer, or the input stops revealing it. We test this on transformers trained for in-context meta-analysis, which must infer the hidden heterogeneity between studies to weight them correctly, and where both reference points are known. Under distribution shift, probe scores fall and prediction error rises 12--15times, yet the model recovers a similar share of the headroom, indicating that the data lost information, not the representation. We then analyze the real models. The single-cell foundation model scGPT encodes biological variability only partially. We also revisit four influential LLM probing studies, which claim that models represent geography, the state of an Othello board, truth, and the demographics of their users. Against a floor computed from the input text alone, some of these claims hold, while others are largely explained by the text itself.

  • 1 authors
·
Oct 5

Reprogramming under constraints: Revisiting efficient and reliable transferability of lottery tickets

In the era of foundation models with huge pre-training budgets, the downstream tasks have been shifted to the narrative of efficient and fast adaptation. For classification-based tasks in the domain of computer vision, the two most efficient approaches have been linear probing (LP) and visual prompting/reprogramming (VP); the former aims to learn a classifier in the form of a linear head on the features extracted by the pre-trained model, while the latter maps the input data to the domain of the source data on which the model was originally pre-trained on. Although extensive studies have demonstrated the differences between LP and VP in terms of downstream performance, we explore the capabilities of the two aforementioned methods via the sparsity axis: (a) Data sparsity: the impact of few-shot adaptation and (b) Model sparsity: the impact of lottery tickets (LT). We demonstrate that LT are not universal reprogrammers, i.e., for certain target datasets, reprogramming an LT yields significantly lower performance than the reprogrammed dense model although their corresponding upstream performance is similar. Further, we demonstrate that the calibration of dense models is always superior to that of their lottery ticket counterparts under both LP and VP regimes. Our empirical study opens a new avenue of research into VP for sparse models and encourages further understanding of the performance beyond the accuracy achieved by VP under constraints of sparsity. Code and logs can be accessed at https://github.com/landskape-ai/Reprogram_LT.

  • 4 authors
·
Aug 28, 2023

HLA: Expressive Hybrid Linear Attention via Chunk-Wise Dynamic Mixing

Linear attention enables efficient long-context autoregressive decoding by compressing history into recurrent states, but this compression can make selective access to sparse and distant information difficult. Existing chunk-based extensions increase memory capacity, yet learned chunk-mixing coefficients may remain fixed with respect to input content and therefore cannot adapt historical access to each query. We introduce Hybrid Linear Attention (HLA), a query-dependent chunk-level attention mechanism for Gated DeltaNet (GDN). HLA represents each completed chunk as an exact affine state transition and computes content-dependent routing gates from compact, self-attentively pooled representatives. Each gate interpolates the corresponding historical transition with the identity map, controlling both the chunk's additive memory and its transformation of earlier states. Effective-support regularization further encourages concentrated routing for sparse inference. We evaluate HLA under both pretrained adaptation and from-scratch training. Across Qwen3.5 models from 0.8B to 9B, HLA consistently improves over native GDN and fixed chunk mixing, with gains of up to 5.57 percentage points on LongBench-V2 and 3.97 points on RULER. In a controlled from-scratch 1.3B setting trained for 100B tokens with a 4K context, HLA also improves RULER performance from 4K to 32K, with gains increasing from 0.83 points at 4K to 4.22 points at 32K. These results demonstrate that query-dependent composition of recurrent memory improves long-context modeling and remains effective beyond the training context while using compact per-chunk affine summaries. Project page: https://caesarhhh.github.io/hla/

Token-Set Choice Confounds POPE: A Systematic Audit of Yes/No Extraction in VLM Hallucination Evaluation

We set out to reproduce a recent hallucination-mitigation result on the POPE benchmark. The LLaVA-1.5-7B baseline we measured, 82.21 F1 on the adversarial split, sat 1.21 to 8.67 points above the adversarial baselines we planned to compare against (81.00, 79.30, and 73.54). We looked at the evaluation code and found a readout choice that moves F1 on its own. A two-token logit readout decides yes versus no by comparing two vocabulary IDs, 3582 ("yes") and 1217 ("no"). Across 9,000 greedy-decode questions spanning all three splits, neither ID is generated even once. The model emits " Yes" (token 3869) and " No" (token 1939), because SentencePiece prepends a space byte after the prompt suffix "ASSISTANT:". Read with an eight-token lookup that covers the space-prefixed surface forms, LLaVA-1.5-7B scores F1 0.8221, 0.8498, and 0.8713 on the adversarial, popular, and random splits. That 6.13-point adversarial shift exceeds the adversarial gain reported by five of the six papers we surveyed. None of them states its readout, and our reference ran under 4-bit NF4 quantization, so we cannot say how much of any reported gain a matched evaluation would keep. That comparison stays unresolved until readout and precision are matched. On the fixed baseline we run nine inference-time corrections of our own (none beat it) and dissect why the adversarial split resists logit-level intervention. In a 3,000-question probe, wrong predictions draw more image attention than correct ones (Cohen's d=-0.46, p=1.4times10^{-24}), the opposite of what grounding-based corrections assume. A four-readout audit across four further VLMs from three tokenizer families confirms the confound is protocol-level, not model-specific: porting the LLaVA-1.5 IDs verbatim drops F1 to 0.00 on the two disjoint-vocabulary models, whereas a tokenizer-derived readout holds between 0.80 and 0.92.

  • 2 authors
·
Oct 18 4

PILOT: A Promptable Interleaved Layout-aware OCR Transformer

Classical OCR pipelines decompose document reading into detection, segmentation, and recognition stages, which makes them sensitive to localization errors and difficult to extend to interactive querying. This work investigates whether a single compact model can jointly perform text recognition and spatial grounding on both handwritten and printed documents. We introduce PILOT, a 155M-parameter prompt-conditioned generative model that formulates document OCR as unified sequence generation. A lightweight depthwise-separable CNN encodes the page, and a Transformer decoder autoregressively emits a single stream of subword and quantized absolute-coordinate tokens on a 10\,px grid, enabling full-page OCR, region-conditioned reading, and query-by-string spotting within the same architecture. A three-stage curriculum, progressing from plain transcription to joint text-and-box generation and finally to prompt-controlled extraction, stabilizes training and improves spatial grounding. Experiments on IAM, RIMES~2009, SROIE~2019, and the heterogeneous MAURDOR benchmark show that PILOT achieves competitive or superior performance in text recognition and line-level detection compared with traditional OCR systems, recent end-to-end HTR models, and compact vision--language models, while remaining substantially smaller than billion-scale multimodal models. Additional evaluations on fine-grained OCR and query-by-string spotting further confirm that a unified text--layout decoder can provide accurate and efficient promptable OCR in a compact setting. To support reproducibility, we release the synthetic SROIE generator, the 500k annotated IDL/PDFA pages, the harmonized line-level annotations for IAM, RIMES~2009, and MAURDOR, and the source code at https://github.com/hamdilaziz/PILOT.

  • 4 authors
·
Apr 16

Table Meets LLM: Can Large Language Models Understand Structured Table Data? A Benchmark and Empirical Study

Large language models (LLMs) are becoming attractive as few-shot reasoners to solve Natural Language (NL)-related tasks. However, the understanding of their capability to process structured data like tables remains an under-explored area. While tables can be serialized as input for LLMs, there is a lack of comprehensive studies on whether LLMs genuinely comprehend this data. In this paper, we try to understand this by designing a benchmark to evaluate the structural understanding capabilities of LLMs through seven distinct tasks, e.g., cell lookup, row retrieval and size detection. Specially, we perform a series of evaluations on the recent most advanced LLM models, GPT-3.5 and GPT-4 and observe that performance varied with different input choices, including table input format, content order, role prompting, and partition marks. Drawing from the insights gained through the benchmark evaluations, we propose self-augmentation for effective structural prompting, such as critical value / range identification using internal knowledge of LLMs. When combined with carefully chosen input choices, these structural prompting methods lead to promising improvements in LLM performance on a variety of tabular tasks, e.g., TabFact(uparrow2.31%), HybridQA(uparrow2.13%), SQA(uparrow2.72%), Feverous(uparrow0.84%), and ToTTo(uparrow5.68%). We believe that our open source benchmark and proposed prompting methods can serve as a simple yet generic selection for future research. The code and data of this paper will be temporality released at https://anonymous.4open.science/r/StructuredLLM-76F3/README.md and will be replaced with an official one at https://github.com/microsoft/TableProvider later.

microsoft Microsoft
·
May 22, 2023

Hyperdimensional Probe: Decoding LLM Representations via Vector Symbolic Architectures

Despite their capabilities, Large Language Models (LLMs) remain opaque with limited understanding of their internal representations. Current interpretability methods, such as direct logit attribution (DLA) and sparse autoencoders (SAEs), provide restricted insight due to limitations such as the model's output vocabulary or unclear feature names. This work introduces Hyperdimensional Probe, a novel paradigm for decoding information from the LLM vector space. It combines ideas from symbolic representations and neural probing to project the model's residual stream into interpretable concepts via Vector Symbolic Architectures (VSAs). This probe combines the strengths of SAEs and conventional probes while overcoming their key limitations. We validate our decoding paradigm with controlled input-completion tasks, probing the model's final state before next-token prediction on inputs spanning syntactic pattern recognition, key-value associations, and abstract inference. We further assess it in a question-answering setting, examining the state of the model both before and after text generation. Our experiments show that our probe reliably extracts meaningful concepts across varied LLMs, embedding sizes, and input domains, also helping identify LLM failures. Our work advances information decoding in LLM vector space, enabling extracting more informative, interpretable, and structured features from neural representations.

  • 5 authors
·
Sep 29, 2025 2

Alignment via Training Against Probes Without Losing Monitorability

Models are usually aligned based on their observed outputs, using demonstrations, preference data, or reward signals. These objectives reward responses that look aligned. More capable models may learn to satisfy them without internalizing the intended behavior, for example by faking compliance during training. Such superficial compliance could be harder when the objective is defined on model internals rather than outputs. Therefore, we study probe-guided fine-tuning, using probes that detect undesired properties in model activations as a direct training signal. We evaluate linear and non-linear probes with different numbers of probes per layer across two alignment objectives: harmlessness and honesty. We find that training against probes that do not update during training is an easily exploitable objective, while continuously updated probes substantially reduce harmfulness and improve honesty while preserving utility. Probe-guided fine-tuning achieves better safety-utility trade-offs than DPO and inference-time steering, while being substantially more robust against jailbreak and abliteration attacks. Moreover, the concepts stay linearly encoded after fine-tuning, meaning oversight is not lost by our method. Training against probes thus offers a way to shape what models represent rather than only what they output, which may become increasingly important as models get better at making their outputs look aligned.

  • 6 authors
·
Sep 30 1

AraMS-28k: The Largest Publicly Released Line-Level Dataset of Historical Arabic Manuscripts with Margin and Insertion-Anchor Annotations

We introduce AraMS-28k, the largest publicly released line-level dataset of genuine historical Arabic manuscripts, comprising 14 books, 3,043 pages, and 28,600 annotated text lines (27,971 main-text, 629 margin). Thirteen books are hand-copied manuscripts spanning three script traditions -- Naskh, Ruq'ah, and Maghrebi -- and one is a lithographed printed edition included to broaden format diversity. Each line is labelled as main-text or margin, and margin lines that have an unambiguous attachment point in the main text are further annotated with an insertion anchor, recovering the manuscript's true non-linear reading order at line-level granularity -- to our knowledge the first such annotation released for a historical Arabic manuscript corpus. Because reference transcriptions are fully vocalised while manuscript hands are typically undiacritised, we release both the raw diacritised transcription and a diacritic-normalised counterpart for every line. The dataset was constructed with RefLAM, a reference-grounded annotation pipeline that aligns multimodal-LLM OCR against independently sourced clean transcriptions and routes every line through human review, combining automatic verification with expert oversight. We describe the construction and quality-control process, present the annotation schema, report dataset statistics at both the corpus and per-book level, and provide baseline HTR results using Kraken and HATFormer, including a cross-script generalisation gradient from in-distribution pages to fully unseen books. AraMS-28k is released with page images, line-level annotations, and fixed train/val/test splits under CC BY-NC-SA 4.0 to support reproducible research on Arabic manuscript recognition, layout analysis, and reading-order recovery.

  • 4 authors
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Aug 26

The Hedgehog & the Porcupine: Expressive Linear Attentions with Softmax Mimicry

Linear attentions have shown potential for improving Transformer efficiency, reducing attention's quadratic complexity to linear in sequence length. This holds exciting promise for (1) training linear Transformers from scratch, (2) "finetuned-conversion" of task-specific Transformers into linear versions that recover task performance, and (3) "pretrained-conversion" of Transformers such as large language models into linear versions finetunable on downstream tasks. However, linear attentions often underperform standard softmax attention in quality. To close this performance gap, we find prior linear attentions lack key properties of softmax attention tied to good performance: low-entropy (or "spiky") weights and dot-product monotonicity. We further observe surprisingly simple feature maps that retain these properties and match softmax performance, but are inefficient to compute in linear attention. We thus propose Hedgehog, a learnable linear attention that retains the spiky and monotonic properties of softmax attention while maintaining linear complexity. Hedgehog uses simple trainable MLPs to produce attention weights mimicking softmax attention. Experiments show Hedgehog recovers over 99% of standard Transformer quality in train-from-scratch and finetuned-conversion settings, outperforming prior linear attentions up to 6 perplexity points on WikiText-103 with causal GPTs, and up to 8.7 GLUE score points on finetuned bidirectional BERTs. Hedgehog also enables pretrained-conversion. Converting a pretrained GPT-2 into a linear attention variant achieves state-of-the-art 16.7 perplexity on WikiText-103 for 125M subquadratic decoder models. We finally turn a pretrained Llama-2 7B into a viable linear attention Llama. With low-rank adaptation, Hedgehog-Llama2 7B achieves 28.1 higher ROUGE-1 points over the base standard attention model, where prior linear attentions lead to 16.5 point drops.

  • 4 authors
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Feb 6, 2024 3

Reasoning to Attend: Try to Understand How <SEG> Token Works

Current Large Multimodal Models (LMMs) empowered visual grounding typically rely on <SEG> tokens as a text prompt to jointly optimize the vision-language model (e.g., LLaVA) and the downstream task-specific model (e.g., SAM). However, we observe that little research has looked into how it works.In this work, we first visualize the similarity maps, which are obtained by computing the semantic similarity between the <SEG> token and the image token embeddings derived from the last hidden layer in both the LLaVA encoder and SAM decoder. Intriguingly, we have found that a striking consistency holds in terms of activation responses in the similarity map, which reveals that what the <SEG> token contributes to is semantic similarity within image-text pairs. Specifically, the <SEG> token, a placeholder expanded in text vocabulary, extensively queries among individual tokenized image patches to match the semantics of an object from text to the paired image, while the Large Language Models (LLMs) are being fine-tuned. Upon the above findings, we present READ, which facilitates LMMs' resilient REAsoning capability of where to attenD under the guidance of highly activated points borrowed from similarity maps. Remarkably, READ features an intuitive design, Similarity as Points module (SasP), which can be seamlessly applied to <SEG>-like paradigms in a plug-and-play fashion. Also, extensive experiments have been conducted on ReasonSeg and RefCOCO(+/g) datasets. To validate whether READ suffers from catastrophic forgetting of previous skills after fine-tuning, we further assess its generation ability on an augmented FP-RefCOCO(+/g) dataset. All codes and models are publicly available at https://github.com/rui-qian/READ.

  • 3 authors
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Dec 23, 2024

Do you "see" what I "see"? A Multi-panel Visual Question Answer Dataset for Large Language Model Chart Analysis

Digital libraries increasingly host scientific publications whose figures encode primary research findings, yet making this visual content searchable, accessible, and reusable remains an open challenge. Large language and multimodal models (LLMs/LMMs) provide the possibility to automate many figure parsing tasks such as determining data trends or extracting data from plots. In this work, we consider if these models can reliably support task-oriented visual data analysis when presented with synthetic, but realistic, scientific figures that contain multiple charts. Our Visual Question Answering (VQA) process scaffolds our tasks along a four-level description model from basic conceptual answers to interpretive and analytical understanding. Additionally, we outline our process for synthetically generating our single and multi-panel (charts in which there are multiple panels present) plots and testing the data with various LMMs using quantitative analysis. In general, we find LMMs become less accurate with increasing figure complexity as the number of panels, number of plot elements, and difficulty of questions increase. Finally, because LMM accuracy is expected to change rapidly, our analysis also considers cost relative to performance as a metric to inform future user decisions. We provide the detailed question-answer pairs used in this analysis, along with the code used to generate random plots, question-answer pairs and detailed bounding-box metadata for chart elements. The code and data are available at https://github.com/ReadingTimeMachine/LLM_VQA_MultiPanel and https://huggingface.co/datasets/ReadingTimeMachine/visual\_qa\_multipanel

  • 4 authors
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Oct 9

Retrieval Augmented Structured Generation: Business Document Information Extraction As Tool Use

Business Document Information Extraction (BDIE) is the problem of transforming a blob of unstructured information (raw text, scanned documents, etc.) into a structured format that downstream systems can parse and use. It has two main tasks: Key-Information Extraction (KIE) and Line Items Recognition (LIR). In this paper, we argue that BDIE is best modeled as a Tool Use problem, where the tools are these downstream systems. We then present Retrieval Augmented Structured Generation (RASG), a novel general framework for BDIE that achieves state of the art (SOTA) results on both KIE and LIR tasks on BDIE benchmarks. The contributions of this paper are threefold: (1) We show, with ablation benchmarks, that Large Language Models (LLMs) with RASG are already competitive with or surpasses current SOTA Large Multimodal Models (LMMs) without RASG on BDIE benchmarks. (2) We propose a new metric class for Line Items Recognition, General Line Items Recognition Metric (GLIRM), that is more aligned with practical BDIE use cases compared to existing metrics, such as ANLS*, DocILE, and GriTS. (3) We provide a heuristic algorithm for backcalculating bounding boxes of predicted line items and tables without the need for vision encoders. Finally, we claim that, while LMMs might sometimes offer marginal performance benefits, LLMs + RASG is oftentimes superior given real-world applications and constraints of BDIE.

  • 4 authors
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May 30, 2024 1

Stop Early, Spend Less: Hidden-State Probes as a Practical Recipe for Streaming Moderation of LLM Outputs

Deploying large language models in user-facing systems requires efficient output safety filtering. Existing approaches typically rely on a separate moderation model applied after generation, which doubles inference cost and only detects violations after generation completes. We observe that the signal needed for moderation is already present in the model hidden states. Based on this, we train lightweight token-level probes that operate directly on internal activations, producing per-token safety scores that can be aggregated for both offline evaluation and online intervention. The probe reuses activations from the generator and requires no additional forward pass, enabling sub millisecond per-token safety checks inside the decoding loop. A probe applied to a single mid layer recovers most decisions of a strong guard model, acting as a low cost surrogate optimized for latency rather than accuracy. In streaming settings, it can halt or modify unsafe outputs before they are fully generated, replacing end of sequence moderation with continuous token level monitoring. Compared to post hoc and streaming guard models, our method achieves orders of magnitude lower compute overhead with minimal latency cost. We also provide a practical deployment recipe, including layer selection, aggregation strategy, probing frequency, and triggering thresholds. Finally, we show that the probe linear component corresponds to a direction in residual space, enabling both detection and activation steering at negligible cost.

  • 3 authors
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Jun 8

Retrospective Reader for Machine Reading Comprehension

Machine reading comprehension (MRC) is an AI challenge that requires machine to determine the correct answers to questions based on a given passage. MRC systems must not only answer question when necessary but also distinguish when no answer is available according to the given passage and then tactfully abstain from answering. When unanswerable questions are involved in the MRC task, an essential verification module called verifier is especially required in addition to the encoder, though the latest practice on MRC modeling still most benefits from adopting well pre-trained language models as the encoder block by only focusing on the "reading". This paper devotes itself to exploring better verifier design for the MRC task with unanswerable questions. Inspired by how humans solve reading comprehension questions, we proposed a retrospective reader (Retro-Reader) that integrates two stages of reading and verification strategies: 1) sketchy reading that briefly investigates the overall interactions of passage and question, and yield an initial judgment; 2) intensive reading that verifies the answer and gives the final prediction. The proposed reader is evaluated on two benchmark MRC challenge datasets SQuAD2.0 and NewsQA, achieving new state-of-the-art results. Significance tests show that our model is significantly better than the strong ELECTRA and ALBERT baselines. A series of analysis is also conducted to interpret the effectiveness of the proposed reader.

  • 3 authors
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Jan 27, 2020

Operational Proto-Introspection in Looped Language Models: Process-Quality Taps, Executable Branching, and the Readout-Control Boundary

Can a language model read the quality of its ongoing computation, and can an external intervention turn that readout into better outcomes? We test both questions in a frozen 2.6B looped transformer, Ouro-RLTT. On GSM8K, a strict pre-answer probe excludes the answer region and gold value yet predicts success: hidden states plus length/log-probability features reach AUROC 0.797 versus 0.731 for those surface features alone (increment +0.066; task-clustered 95% CI [+0.021,+0.112]; 170 tasks). On Horizon Logic, a prospectively extended task-disjoint study gives an increment of +0.111 (CI [+0.056,+0.169]), independently replicated on the new cohort (+0.095) and robust to an adversarial malformed-sibling shortcut. Recurrence also moves candidate-quality readability to progressively earlier physical depth; the trend replicates across the Ouro family and qualitatively in out-of-family Huginn, although their transfer geometry differs. The readout converts into validated decision-level gains. Hidden-state-based scores improve risk-coverage over shortcut-only scores in four sealed selective-prediction arms, and terminal selection beats matched random even when every candidate is well formed (27/32 correct selections versus 64.8% expected; p = 0.0086). Generative control does not convert: directional steering is negative, a branch screen is bounded, and exact-compute loop allocation and minimal LoRA direction-binding detect no gain. These tests run through bit-exact branch/carry/prune machinery over Ouro's 192-slot recurrent cache, including a suffix-recompute splice saving up to 88% of per-branch layer passes. We call this decision-usable but not generatively controllable property operational proto-introspection. All load-bearing values use source-item-disjoint splits and antisymmetrized pairwise evaluation.

  • 1 authors
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Jul 27

The Achievement of Higher Flexibility in Multiple Choice-based Tests Using Image Classification Techniques

In spite of the high accuracy of the existing optical mark reading (OMR) systems and devices, a few restrictions remain existent. In this work, we aim to reduce the restrictions of multiple choice questions (MCQ) within tests. We use an image registration technique to extract the answer boxes from answer sheets. Unlike other systems that rely on simple image processing steps to recognize the extracted answer boxes, we address the problem from another perspective by training a machine learning classifier to recognize the class of each answer box (i.e., confirmed, crossed out, or blank answer). This gives us the ability to deal with a variety of shading and mark patterns, and distinguish between chosen (i.e., confirmed) and canceled answers (i.e., crossed out). All existing machine learning techniques require a large number of examples in order to train a model for classification, therefore we present a dataset including six real MCQ assessments with different answer sheet templates. We evaluate two strategies of classification: a straight-forward approach and a two-stage classifier approach. We test two handcrafted feature methods and a convolutional neural network. In the end, we present an easy-to-use graphical user interface of the proposed system. Compared with existing OMR systems, the proposed system has the least constraints and achieves a high accuracy. We believe that the presented work will further direct the development of OMR systems towards reducing the restrictions of the MCQ tests.

  • 2 authors
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Nov 2, 2017

JaWildText: A Benchmark for Vision-Language Models on Japanese Scene Text Understanding

Japanese scene text poses challenges that multilingual benchmarks often fail to capture, including mixed scripts, frequent vertical writing, and a character inventory far larger than the Latin alphabet. Although Japanese is included in several multilingual benchmarks, these resources do not adequately capture the language-specific complexities. Meanwhile, existing Japanese visual text datasets have primarily focused on scanned documents, leaving in-the-wild scene text underexplored. To fill this gap, we introduce JaWildText, a diagnostic benchmark for evaluating vision-language models (VLMs) on Japanese scene text understanding. JaWildText contains 3,241 instances from 2,961 images newly captured in Japan, with 1.12 million annotated characters spanning 3,643 unique character types. It comprises three complementary tasks that vary in visual organization, output format, and writing style: (i) Dense Scene Text Visual Question Answering (STVQA), which requires reasoning over multiple pieces of visual text evidence; (ii) Receipt Key Information Extraction (KIE), which tests layout-aware structured extraction from mobile-captured receipts; and (iii) Handwriting OCR, which evaluates page-level transcription across various media and writing directions. We evaluate 14 open-weight VLMs and find that the best model achieves an average score of 0.64 across the three tasks. Error analyses show recognition remains the dominant bottleneck, especially for kanji. JaWildText enables fine-grained, script-aware diagnosis of Japanese scene text capabilities, and will be released with evaluation code.

  • 2 authors
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Mar 30