Daily Papers

Deductive reasoning plays a pivotal role in the formulation of sound and cohesive arguments. It allows individuals to draw conclusions that logically follow, given the truth value of the information provided. Recent progress in the domain of large language models (LLMs) has showcased their capability in executing deductive reasoning tasks. Nonetheless, a significant portion of research primarily assesses the accuracy of LLMs in solving such tasks, often overlooking a deeper analysis of their reasoning behavior. In this study, we draw upon principles from cognitive psychology to examine inferential strategies employed by LLMs, through a detailed evaluation of their responses to propositional logic problems. Our findings indicate that LLMs display reasoning patterns akin to those observed in humans, including strategies like supposition following or chain construction. Moreover, our research demonstrates that the architecture and scale of the model significantly affect its preferred method of reasoning, with more advanced models tending to adopt strategies more frequently than less sophisticated ones. Importantly, we assert that a model's accuracy, that is the correctness of its final conclusion, does not necessarily reflect the validity of its reasoning process. This distinction underscores the necessity for more nuanced evaluation procedures in the field.

Knights and knaves problems represent a classic genre of logical puzzles where characters either tell the truth or lie. The objective is to logically deduce each character's identity based on their statements. The challenge arises from the truth-telling or lying behavior, which influences the logical implications of each statement. Solving these puzzles requires not only direct deductions from individual statements, but the ability to assess the truthfulness of statements by reasoning through various hypothetical scenarios. As such, knights and knaves puzzles serve as compelling examples of suppositional reasoning. In this paper, we introduce TruthQuest, a benchmark for suppositional reasoning based on the principles of knights and knaves puzzles. Our benchmark presents problems of varying complexity, considering both the number of characters and the types of logical statements involved. Evaluations on TruthQuest show that large language models like Llama 3 and Mixtral-8x7B exhibit significant difficulties solving these tasks. A detailed error analysis of the models' output reveals that lower-performing models exhibit a diverse range of reasoning errors, frequently failing to grasp the concept of truth and lies. In comparison, more proficient models primarily struggle with accurately inferring the logical implications of potentially false statements.

Systematic generalization refers to the capacity to understand and generate novel combinations from known components. Despite recent progress by large language models (LLMs) across various domains, these models often fail to extend their knowledge to novel compositional scenarios, revealing notable limitations in systematic generalization. There has been an ongoing debate about whether neural networks possess the capacity for systematic generalization, with recent studies suggesting that meta-learning approaches designed for compositionality can significantly enhance this ability. However, these insights have largely been confined to linguistic problems, leaving their applicability to other tasks an open question. In this study, we extend meta-learning for compositionality to the domain of abstract spatial reasoning. To this end, we introduce Compositional-ARC-a dataset designed to evaluate the capacity of models to systematically generalize from known geometric transformations (e.g., translation, rotation) of abstract two-dimensional objects to novel combinations of these transformations (e.g., translation+rotation). Our results show that a small transformer-based encoder-decoder model, trained via meta-learning for compositionality, can systematically generalize to previously unseen transformation compositions. Notably, despite having only 5.7M parameters, this model significantly outperforms state-of-the-art LLMs-including o3-mini, GPT-4o, and Gemini 2.0 Flash, which fail to exhibit similar systematic behavior-and performs on par with the winning model of the ARC prize 2024, an 8B-parameter LLM trained via test-time training. Our findings highlight the effectiveness of meta-learning in promoting systematicity beyond linguistic tasks, suggesting a promising direction toward more robust and generalizable models.

Gene expression can be used to subtype breast cancer with improved prediction of risk of recurrence and treatment responsiveness over that obtained using routine immunohistochemistry (IHC). However, in the clinic, molecular profiling is primarily used for ER+ breast cancer, which is costly, tissue destructive, requires specialized platforms and takes several weeks to obtain a result. Deep learning algorithms can effectively extract morphological patterns in digital histopathology images to predict molecular phenotypes quickly and cost-effectively. We propose a new, computationally efficient approach called hist2RNA inspired by bulk RNA-sequencing techniques to predict the expression of 138 genes (incorporated from six commercially available molecular profiling tests), including luminal PAM50 subtype, from hematoxylin and eosin (H&E) stained whole slide images (WSIs). The training phase involves the aggregation of extracted features for each patient from a pretrained model to predict gene expression at the patient level using annotated H&E images from The Cancer Genome Atlas (TCGA, n=335). We demonstrate successful gene prediction on a held-out test set (n = 160, corr = 0.82 across patients, corr = 0.29 across genes) and perform exploratory analysis on an external tissue microarray (TMA) dataset (n = 498) with known IHC and survival information. Our model is able to predict gene expression and luminal PAM50 subtype (Luminal A versus Luminal B) on the TMA dataset with prognostic significance for overall survival in univariate analysis (c-index = 0.56, hazard ratio = 2.16 (95% CI 1.12-3.06), p < 5 x 10-3), and independent significance in multivariate analysis incorporating standard clinicopathological variables (c-index = 0.65, hazard ratio = 1.85 (95% CI 1.30-2.68), p < 5 x 10-3).

Breast cancer is a significant health concern affecting millions of women worldwide. Accurate survival risk stratification plays a crucial role in guiding personalised treatment decisions and improving patient outcomes. Here we present BioFusionNet, a deep learning framework that fuses image-derived features with genetic and clinical data to achieve a holistic patient profile and perform survival risk stratification of ER+ breast cancer patients. We employ multiple self-supervised feature extractors, namely DINO and MoCoV3, pretrained on histopathology patches to capture detailed histopathological image features. We then utilise a variational autoencoder (VAE) to fuse these features, and harness the latent space of the VAE to feed into a self-attention network, generating patient-level features. Next, we develop a co-dual-cross-attention mechanism to combine the histopathological features with genetic data, enabling the model to capture the interplay between them. Additionally, clinical data is incorporated using a feed-forward network (FFN), further enhancing predictive performance and achieving comprehensive multimodal feature integration. Furthermore, we introduce a weighted Cox loss function, specifically designed to handle imbalanced survival data, which is a common challenge in the field. The proposed model achieves a mean concordance index (C-index) of 0.77 and a time-dependent area under the curve (AUC) of 0.84, outperforming state-of-the-art methods. It predicts risk (high versus low) with prognostic significance for overall survival (OS) in univariate analysis (HR=2.99, 95% CI: 1.88--4.78, p<0.005), and maintains independent significance in multivariate analysis incorporating standard clinicopathological variables (HR=2.91, 95% CI: 1.80--4.68, p<0.005). The proposed method not only improves model performance but also addresses a critical gap in handling imbalanced data.

Survival risk stratification is an important step in clinical decision making for breast cancer management. We propose a novel deep learning approach for this purpose by integrating histopathological imaging, genetic and clinical data. It employs vision transformers, specifically the MaxViT model, for image feature extraction, and self-attention to capture intricate image relationships at the patient level. A dual cross-attention mechanism fuses these features with genetic data, while clinical data is incorporated at the final layer to enhance predictive accuracy. Experiments on the public TCGA-BRCA dataset show that our model, trained using the negative log likelihood loss function, can achieve superior performance with a mean C-index of 0.64, surpassing existing methods. This advancement facilitates tailored treatment strategies, potentially leading to improved patient outcomes.

Explainable AI (XAI) in medical histopathology is essential for enhancing the interpretability and clinical trustworthiness of deep learning models in cancer diagnosis. However, the black-box nature of these models often limits their clinical adoption. We introduce GRAPHITE (Graph-based Interpretable Tissue Examination), a post-hoc explainable framework designed for breast cancer tissue microarray (TMA) analysis. GRAPHITE employs a multiscale approach, extracting patches at various magnification levels, constructing an hierarchical graph, and utilising graph attention networks (GAT) with scalewise attention (SAN) to capture scale-dependent features. We trained the model on 140 tumour TMA cores and four benign whole slide images from which 140 benign samples were created, and tested it on 53 pathologist-annotated TMA samples. GRAPHITE outperformed traditional XAI methods, achieving a mean average precision (mAP) of 0.56, an area under the receiver operating characteristic curve (AUROC) of 0.94, and a threshold robustness (ThR) of 0.70, indicating that the model maintains high performance across a wide range of thresholds. In clinical utility, GRAPHITE achieved the highest area under the decision curve (AUDC) of 4.17e+5, indicating reliable decision support across thresholds. These results highlight GRAPHITE's potential as a clinically valuable tool in computational pathology, providing interpretable visualisations that align with the pathologists' diagnostic reasoning and support precision medicine.

We propose the AIMO Interpretability Challenge, a competition on distinguishing robust from spurious reasoning in frontier mathematical language models based on the models' internal mechanisms. The challenge is motivated by a central limitation of standard reasoning benchmarks: strong final-answer accuracy does not reveal whether a model relies on stable reasoning mechanisms or exploits brittle reasoning shortcuts. Building on AI Mathematical Olympiad (AIMO) problems and submissions, together with resources from the Fields Model Initiative, the competition will provide (1) newly-published olympiad-level math reasoning problems and their symbolic representations, allowing generation of novel functional variants, (2) access to frontier reasoning models, and (3) assessments of models' adversarial robustness on these problems. Participants will use these resources, along with our computing infrastructure support, to develop methods for identifying which models solve problems robustly. Our competition will also create a new, open robustness benchmark and baseline systems, aiming to provide a lasting foundation for standard benchmarking in mathematical reasoning and interpretability. Scientifically, the competition connects interpretability and generalization research around a central question in AI research: can we determine if, and to what extent, the decision-making of frontier AI models is generalizable and thus, reliable?

Large language models perform well on many logical reasoning benchmarks, but it remains unclear which core logical skills they truly master. To address this, we introduce LogicSkills, a benchmark that isolates three fundamental logical skills: (i) formal symbolizationx2014{}translating premises into first-order logic; (ii) countermodel constructionx2014showing that an argument is logically invalid by constructing a finite countermodel; and (iii) validity assessmentx2014determining whether a conclusion follows from a set of premises. Items are drawn from the two-variable fragment of first-order logic without identity and are presented in both English and a Carrollian nonce-word language. All instances are solver-verified with Z3 for correctness and non-triviality. Across conventional instruction-tuned LLMs, performance is high on validity assessment but substantially lower on formal symbolization and countermodel construction, highlighting that high task-level accuracy can mask weaknesses in core logical skills. In contrast, recent reasoning-tuned models perform strongly across all three tasks, suggesting a more systematic logical skill profile.

Sketches offer designers a concise yet expressive medium for early-stage fashion ideation by specifying structure, silhouette, and spatial relationships, while textual descriptions complement sketches to convey material, color, and stylistic details. Effectively combining textual and visual modalities requires adherence to the sketch visual structure when leveraging the guidance of localized attributes from text. We present LOcalized Text and Sketch with multi-level guidance (LOTS), a framework that enhances fashion image generation by combining global sketch guidance with multiple localized sketch-text pairs. LOTS employs a Multi-level Conditioning Stage to independently encode local features within a shared latent space while maintaining global structural coordination. Then, the Diffusion Pair Guidance stage integrates both local and global conditioning via attention-based guidance within the diffusion model's multi-step denoising process. To validate our method, we develop Sketchy, the first fashion dataset where multiple text-sketch pairs are provided per image. Sketchy provides high-quality, clean sketches with a professional look and consistent structure. To assess robustness beyond this setting, we also include an "in the wild" split with non-expert sketches, featuring higher variability and imperfections. Experiments demonstrate that our method strengthens global structural adherence while leveraging richer localized semantic guidance, achieving improvement over state-of-the-art. The dataset, platform, and code are publicly available.

There is an increasing trend towards evaluating NLP models with LLM-generated judgments instead of human judgments. In the absence of a comparison against human data, this raises concerns about the validity of these evaluations; in case they are conducted with proprietary models, this also raises concerns over reproducibility. We provide JUDGE-BENCH, a collection of 20 NLP datasets with human annotations, and comprehensively evaluate 11 current LLMs, covering both open-weight and proprietary models, for their ability to replicate the annotations. Our evaluations show that each LLM exhibits a large variance across datasets in its correlation to human judgments. We conclude that LLMs are not yet ready to systematically replace human judges in NLP.

For scientific progress, we need benchmarks that test the limits of state-of-the-art models, and evaluation methods that inform us about failure cases. As models get stronger, standard benchmarks for machine translation are approaching saturation. Further, automatic translation metrics are unreliable, vulnerable to reward-hacking, and provide unactionable assessments. Even gold human evaluation is not problem-free, because it often lacks reproducibility, objectivity, and scalability. Overall, this prevents us from tracking objective progress in the field and identifying pathways for improvement. We introduce the Last Translation Benchmark, a collection of human-authored and peer-reviewed examples (texts, images, audio, videos) that break leading machine translation models. We also present a new evaluation approach: each example comes with handcrafted verification rules describing concrete failure cases on that example, therefore allowing reliable and actionable future evaluation. The Last Translation Benchmark is a live dataset that accepts ongoing contributions. The latest version is LTBv1, containing accepted contributions prior to September 1st 2026, with future releases planned as new data is continuously collected.