- MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation Deep generative models have recently achieved superior performance in 3D molecule generation. Most of them first generate atoms and then add chemical bonds based on the generated atoms in a post-processing manner. However, there might be no corresponding bond solution for the temporally generated atoms as their locations are generated without considering potential bonds. We define this problem as the atom-bond inconsistency problem and claim it is the main reason for current approaches to generating unrealistic 3D molecules. To overcome this problem, we propose a new diffusion model called MolDiff which can generate atoms and bonds simultaneously while still maintaining their consistency by explicitly modeling the dependence between their relationships. We evaluated the generation ability of our proposed model and the quality of the generated molecules using criteria related to both geometry and chemical properties. The empirical studies showed that our model outperforms previous approaches, achieving a three-fold improvement in success rate and generating molecules with significantly better quality. 4 authors · May 11, 2023
- MOROCO: The Moldavian and Romanian Dialectal Corpus In this work, we introduce the MOldavian and ROmanian Dialectal COrpus (MOROCO), which is freely available for download at https://github.com/butnaruandrei/MOROCO. The corpus contains 33564 samples of text (with over 10 million tokens) collected from the news domain. The samples belong to one of the following six topics: culture, finance, politics, science, sports and tech. The data set is divided into 21719 samples for training, 5921 samples for validation and another 5924 samples for testing. For each sample, we provide corresponding dialectal and category labels. This allows us to perform empirical studies on several classification tasks such as (i) binary discrimination of Moldavian versus Romanian text samples, (ii) intra-dialect multi-class categorization by topic and (iii) cross-dialect multi-class categorization by topic. We perform experiments using a shallow approach based on string kernels, as well as a novel deep approach based on character-level convolutional neural networks containing Squeeze-and-Excitation blocks. We also present and analyze the most discriminative features of our best performing model, before and after named entity removal. 2 authors · Jan 19, 2019
- Accelerating db-A$^\textbf{*}$ for Kinodynamic Motion Planning Using Diffusion We present a novel approach for generating motion primitives for kinodynamic motion planning using diffusion models. The motions generated by our approach are adapted to each problem instance by utilizing problem-specific parameters, allowing for finding solutions faster and of better quality. The diffusion models used in our approach are trained on randomly cut solution trajectories. These trajectories are created by solving randomly generated problem instances with a kinodynamic motion planner. Experimental results show significant improvements up to 30 percent in both computation time and solution quality across varying robot dynamics such as second-order unicycle or car with trailer. 4 authors · Mar 7
- Underspecification Presents Challenges for Credibility in Modern Machine Learning ML models often exhibit unexpectedly poor behavior when they are deployed in real-world domains. We identify underspecification as a key reason for these failures. An ML pipeline is underspecified when it can return many predictors with equivalently strong held-out performance in the training domain. Underspecification is common in modern ML pipelines, such as those based on deep learning. Predictors returned by underspecified pipelines are often treated as equivalent based on their training domain performance, but we show here that such predictors can behave very differently in deployment domains. This ambiguity can lead to instability and poor model behavior in practice, and is a distinct failure mode from previously identified issues arising from structural mismatch between training and deployment domains. We show that this problem appears in a wide variety of practical ML pipelines, using examples from computer vision, medical imaging, natural language processing, clinical risk prediction based on electronic health records, and medical genomics. Our results show the need to explicitly account for underspecification in modeling pipelines that are intended for real-world deployment in any domain. 40 authors · Nov 6, 2020
1 On Robustness and Transferability of Convolutional Neural Networks Modern deep convolutional networks (CNNs) are often criticized for not generalizing under distributional shifts. However, several recent breakthroughs in transfer learning suggest that these networks can cope with severe distribution shifts and successfully adapt to new tasks from a few training examples. In this work we study the interplay between out-of-distribution and transfer performance of modern image classification CNNs for the first time and investigate the impact of the pre-training data size, the model scale, and the data preprocessing pipeline. We find that increasing both the training set and model sizes significantly improve the distributional shift robustness. Furthermore, we show that, perhaps surprisingly, simple changes in the preprocessing such as modifying the image resolution can significantly mitigate robustness issues in some cases. Finally, we outline the shortcomings of existing robustness evaluation datasets and introduce a synthetic dataset SI-Score we use for a systematic analysis across factors of variation common in visual data such as object size and position. 14 authors · Jul 16, 2020 1
- First principles simulations of dense hydrogen Accurate knowledge of the properties of hydrogen at high compression is crucial for astrophysics (e.g. planetary and stellar interiors, brown dwarfs, atmosphere of compact stars) and laboratory experiments, including inertial confinement fusion. There exists experimental data for the equation of state, conductivity, and Thomson scattering spectra. However, the analysis of the measurements at extreme pressures and temperatures typically involves additional model assumptions, which makes it difficult to assess the accuracy of the experimental data. rigorously. On the other hand, theory and modeling have produced extensive collections of data. They originate from a very large variety of models and simulations including path integral Monte Carlo (PIMC) simulations, density functional theory (DFT), chemical models, machine-learned models, and combinations thereof. At the same time, each of these methods has fundamental limitations (fermion sign problem in PIMC, approximate exchange-correlation functionals of DFT, inconsistent interaction energy contributions in chemical models, etc.), so for some parameter ranges accurate predictions are difficult. Recently, a number of breakthroughs in first principle PIMC and DFT simulations were achieved which are discussed in this review. Here we use these results to benchmark different simulation methods. We present an update of the hydrogen phase diagram at high pressures, the expected phase transitions, and thermodynamic properties including the equation of state and momentum distribution. Furthermore, we discuss available dynamic results for warm dense hydrogen, including the conductivity, dynamic structure factor, plasmon dispersion, imaginary-time structure, and density response functions. We conclude by outlining strategies to combine different simulations to achieve accurate theoretical predictions. 27 authors · May 17, 2024
- Multimodal Deep Learning This book is the result of a seminar in which we reviewed multimodal approaches and attempted to create a solid overview of the field, starting with the current state-of-the-art approaches in the two subfields of Deep Learning individually. Further, modeling frameworks are discussed where one modality is transformed into the other, as well as models in which one modality is utilized to enhance representation learning for the other. To conclude the second part, architectures with a focus on handling both modalities simultaneously are introduced. Finally, we also cover other modalities as well as general-purpose multi-modal models, which are able to handle different tasks on different modalities within one unified architecture. One interesting application (Generative Art) eventually caps off this booklet. 17 authors · Jan 12, 2023
- Neutron capture measurements for s-process nucleosynthesis; A review about CERN n_TOF developments and contributions This article presents a review about the main CERN n\_TOF contributions to the field of neutron-capture experiments of interest for s-process nucleosynthesis studies over the last 25 years, with special focus on the measurement of radioactive isotopes. A few recent capture experiments on stable isotopes of astrophysical interest are also discussed. Results on s-process branching nuclei are appropriate to illustrate how advances in detection systems and upgrades in the facility have enabled increasingly challenging experiments and, as a consequence, have led to a better understanding and modeling of the s-process mechanism of nucleosynthesis. New endeavors combining radioactive-ion beams from ISOLDE for the production of radioisotopically pure samples for activation experiments at the new NEAR facility at n\_TOF are briefly discussed. On the basis of these new exciting results, also current limitations of state-of-the-art TOF and activation techniques will be depicted, thereby showing the pressing need for further upgrades and enhancements on both facilities and detection systems. A brief account of the potential technique based on inverse kinematics for direct neutron-capture measurements is also presented. 146 authors · Feb 14