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Jun 29

MCPTox: A Benchmark for Tool Poisoning Attack on Real-World MCP Servers

By providing a standardized interface for LLM agents to interact with external tools, the Model Context Protocol (MCP) is quickly becoming a cornerstone of the modern autonomous agent ecosystem. However, it creates novel attack surfaces due to untrusted external tools. While prior work has focused on attacks injected through external tool outputs, we investigate a more fundamental vulnerability: Tool Poisoning, where malicious instructions are embedded within a tool's metadata without execution. To date, this threat has been primarily demonstrated through isolated cases, lacking a systematic, large-scale evaluation. We introduce MCPTox, the first benchmark to systematically evaluate agent robustness against Tool Poisoning in realistic MCP settings. MCPTox is constructed upon 45 live, real-world MCP servers and 353 authentic tools. To achieve this, we design three distinct attack templates to generate a comprehensive suite of 1312 malicious test cases by few-shot learning, covering 10 categories of potential risks. Our evaluation on 20 prominent LLM agents setting reveals a widespread vulnerability to Tool Poisoning, with o1-mini, achieving an attack success rate of 72.8\%. We find that more capable models are often more susceptible, as the attack exploits their superior instruction-following abilities. Finally, the failure case analysis reveals that agents rarely refuse these attacks, with the highest refused rate (Claude-3.7-Sonnet) less than 3\%, demonstrating that existing safety alignment is ineffective against malicious actions that use legitimate tools for unauthorized operation. Our findings create a crucial empirical baseline for understanding and mitigating this widespread threat, and we release MCPTox for the development of verifiably safer AI agents. Our dataset is available at an anonymized repository: https://anonymous.4open.science/r/AAAI26-7C02.

  • 9 authors
·
Aug 18, 2025

MCP-ITP: An Automated Framework for Implicit Tool Poisoning in MCP

To standardize interactions between LLM-based agents and their environments, the Model Context Protocol (MCP) was proposed and has since been widely adopted. However, integrating external tools expands the attack surface, exposing agents to tool poisoning attacks. In such attacks, malicious instructions embedded in tool metadata are injected into the agent context during MCP registration phase, thereby manipulating agent behavior. Prior work primarily focuses on explicit tool poisoning or relied on manually crafted poisoned tools. In contrast, we focus on a particularly stealthy variant: implicit tool poisoning, where the poisoned tool itself remains uninvoked. Instead, the instructions embedded in the tool metadata induce the agent to invoke a legitimate but high-privilege tool to perform malicious operations. We propose MCP-ITP, the first automated and adaptive framework for implicit tool poisoning within the MCP ecosystem. MCP-ITP formulates poisoned tool generation as a black-box optimization problem and employs an iterative optimization strategy that leverages feedback from both an evaluation LLM and a detection LLM to maximize Attack Success Rate (ASR) while evading current detection mechanisms. Experimental results on the MCPTox dataset across 12 LLM agents demonstrate that MCP-ITP consistently outperforms the manually crafted baseline, achieving up to 84.2% ASR while suppressing the Malicious Tool Detection Rate (MDR) to as low as 0.3%.

  • 4 authors
·
Jan 11 1

Model Context Protocol Threat Modeling and Analyzing Vulnerabilities to Prompt Injection with Tool Poisoning

The Model Context Protocol (MCP) has rapidly emerged as a universal standard for connecting AI assistants to external tools and data sources. While MCP simplifies integration between AI applications and various services, it introduces significant security vulnerabilities, particularly on the client side. In this work we conduct threat modelings of MCP implementations using STRIDE (Spoofing, Tampering, Repudiation, Information Disclosure, Denial of Service, Elevation of Privilege) and DREAD (Damage, Reproducibility, Exploitability, Affected Users, Discoverability) frameworks across five key components: (1) MCP Host and Client, (2) LLM, (3) MCP Server, (4) External Data Stores, and (5) Authorization Server. This comprehensive analysis reveals tool poisoning-where malicious instructions are embedded in tool metadata-as the most prevalent and impactful client-side vulnerability. We therefore focus our empirical evaluation on this critical attack vector, providing a systematic comparison of how seven major MCP clients validate and defend against tool poisoning attacks. Our analysis reveals significant security issues with most tested clients due to insufficient static validation and parameter visibility. We propose a multi-layered defense strategy encompassing static metadata analysis, model decision path tracking, behavioral anomaly detection, and user transparency mechanisms. This research addresses a critical gap in MCP security, which has primarily focused on server-side vulnerabilities, and provides actionable recommendations and mitigation strategies for securing AI agent ecosystems.

  • 4 authors
·
Mar 22

Beyond the Protocol: Unveiling Attack Vectors in the Model Context Protocol Ecosystem

The Model Context Protocol (MCP) is an emerging standard designed to enable seamless interaction between Large Language Model (LLM) applications and external tools or resources. Within a short period, thousands of MCP services have already been developed and deployed. However, the client-server integration architecture inherent in MCP may expand the attack surface against LLM Agent systems, introducing new vulnerabilities that allow attackers to exploit by designing malicious MCP servers. In this paper, we present the first systematic study of attack vectors targeting the MCP ecosystem. Our analysis identifies four categories of attacks, i.e., Tool Poisoning Attacks, Puppet Attacks, Rug Pull Attacks, and Exploitation via Malicious External Resources. To evaluate the feasibility of these attacks, we conduct experiments following the typical steps of launching an attack through malicious MCP servers: upload-download-attack. Specifically, we first construct malicious MCP servers and successfully upload them to three widely used MCP aggregation platforms. The results indicate that current audit mechanisms are insufficient to identify and prevent the proposed attack methods. Next, through a user study and interview with 20 participants, we demonstrate that users struggle to identify malicious MCP servers and often unknowingly install them from aggregator platforms. Finally, we demonstrate that these attacks can trigger harmful behaviors within the user's local environment-such as accessing private files or controlling devices to transfer digital assets-by deploying a proof-of-concept (PoC) framework against five leading LLMs. Additionally, based on interview results, we discuss four key challenges faced by the current security ecosystem surrounding MCP servers. These findings underscore the urgent need for robust security mechanisms to defend against malicious MCP servers.

  • 9 authors
·
May 31, 2025 1

Prompt Injection Attacks on Agentic Coding Assistants: A Systematic Analysis of Vulnerabilities in Skills, Tools, and Protocol Ecosystems

The proliferation of agentic AI coding assistants, including Claude Code, GitHub Copilot, Cursor, and emerging skill-based architectures, has fundamentally transformed software development workflows. These systems leverage Large Language Models (LLMs) integrated with external tools, file systems, and shell access through protocols like the Model Context Protocol (MCP). However, this expanded capability surface introduces critical security vulnerabilities. In this Systematization of Knowledge (SoK) paper, we present a comprehensive analysis of prompt injection attacks targeting agentic coding assistants. We propose a novel three-dimensional taxonomy categorizing attacks across delivery vectors, attack modalities, and propagation behaviors. Our meta-analysis synthesizes findings from 78 recent studies (2021--2026), consolidating evidence that attack success rates against state-of-the-art defenses exceed 85\% when adaptive attack strategies are employed. We systematically catalog 42 distinct attack techniques spanning input manipulation, tool poisoning, protocol exploitation, multimodal injection, and cross-origin context poisoning. Through critical analysis of 18 defense mechanisms reported in prior work, we identify that most achieve less than 50\% mitigation against sophisticated adaptive attacks. We contribute: (1) a unified taxonomy bridging disparate attack classifications, (2) the first systematic analysis of skill-based architecture vulnerabilities with concrete exploit chains, and (3) a defense-in-depth framework grounded in the limitations we identify. Our findings indicate that the security community must treat prompt injection as a first-class vulnerability class requiring architectural-level mitigations rather than ad-hoc filtering approaches.

  • 2 authors
·
Jan 24 1

Model Context Protocol (MCP) at First Glance: Studying the Security and Maintainability of MCP Servers

Although Foundation Models (FMs), such as GPT-4, are increasingly used in domains like finance and software engineering, reliance on textual interfaces limits these models' real-world interaction. To address this, FM providers introduced tool calling-triggering a proliferation of frameworks with distinct tool interfaces. In late 2024, Anthropic introduced the Model Context Protocol (MCP) to standardize this tool ecosystem, which has become the de facto standard with over eight million weekly SDK downloads. Despite its adoption, MCP's AI-driven, non-deterministic control flow introduces new risks to sustainability, security, and maintainability, warranting closer examination. Towards this end, we present the first large-scale empirical study of MCP servers. Using state-of-the-art health metrics and a hybrid analysis pipeline, combining a general-purpose static analysis tool with an MCP-specific scanner, we evaluate 1,899 open-source MCP servers to assess their health, security, and maintainability. Despite MCP servers demonstrating strong health metrics, we identify eight distinct vulnerabilities - only three overlapping with traditional software vulnerabilities. Additionally, 7.2% of servers contain general vulnerabilities and 5.5% exhibit MCP-specific tool poisoning. Regarding maintainability, while 66% exhibit code smells, 14.4% contain nine bug patterns overlapping with traditional open-source software projects. These findings highlight the need for MCP-specific vulnerability detection techniques while reaffirming the value of traditional analysis and refactoring practices.

  • 6 authors
·
Jun 16, 2025

Securing the Model Context Protocol (MCP): Risks, Controls, and Governance

The Model Context Protocol (MCP) replaces static, developer-controlled API integrations with more dynamic, user-driven agent systems, which also introduces new security risks. As MCP adoption grows across community servers and major platforms, organizations encounter threats that existing AI governance frameworks (such as NIST AI RMF and ISO/IEC 42001) do not yet cover in detail. We focus on three types of adversaries that take advantage of MCP s flexibility: content-injection attackers that embed malicious instructions into otherwise legitimate data; supply-chain attackers who distribute compromised servers; and agents who become unintentional adversaries by over-stepping their role. Based on early incidents and proof-of-concept attacks, we describe how MCP can increase the attack surface through data-driven exfiltration, tool poisoning, and cross-system privilege escalation. In response, we propose a set of practical controls, including per-user authentication with scoped authorization, provenance tracking across agent workflows, containerized sandboxing with input/output checks, inline policy enforcement with DLP and anomaly detection, and centralized governance using private registries or gateway layers. The aim is to help organizations ensure that unvetted code does not run outside a sandbox, tools are not used beyond their intended scope, data exfiltration attempts are detectable, and actions can be audited end-to-end. We close by outlining open research questions around verifiable registries, formal methods for these dynamic systems, and privacy-preserving agent operations.

  • 3 authors
·
Nov 24, 2025

Systematic Analysis of MCP Security

The Model Context Protocol (MCP) has emerged as a universal standard that enables AI agents to seamlessly connect with external tools, significantly enhancing their functionality. However, while MCP brings notable benefits, it also introduces significant vulnerabilities, such as Tool Poisoning Attacks (TPA), where hidden malicious instructions exploit the sycophancy of large language models (LLMs) to manipulate agent behavior. Despite these risks, current academic research on MCP security remains limited, with most studies focusing on narrow or qualitative analyses that fail to capture the diversity of real-world threats. To address this gap, we present the MCP Attack Library (MCPLIB), which categorizes and implements 31 distinct attack methods under four key classifications: direct tool injection, indirect tool injection, malicious user attacks, and LLM inherent attack. We further conduct a quantitative analysis of the efficacy of each attack. Our experiments reveal key insights into MCP vulnerabilities, including agents' blind reliance on tool descriptions, sensitivity to file-based attacks, chain attacks exploiting shared context, and difficulty distinguishing external data from executable commands. These insights, validated through attack experiments, underscore the urgency for robust defense strategies and informed MCP design. Our contributions include 1) constructing a comprehensive MCP attack taxonomy, 2) introducing a unified attack framework MCPLIB, and 3) conducting empirical vulnerability analysis to enhance MCP security mechanisms. This work provides a foundational framework, supporting the secure evolution of MCP ecosystems.

  • 8 authors
·
Aug 17, 2025

POISE: Position-Aware Undetectable Skill Injection on LLM Agents

Agent skills provide a lightweight mechanism for extending general-purpose agents, but their open format exposes them to skill-poisoning attacks. A practically dangerous injection must stay invisible: if executing the payload derails the user's legitimate task, the resulting failure signal invites inspection of the skill. We therefore evaluate attacks by Attack Success Rate, which requires the injected payload to execute and the user's task to still pass its verifier in the same trial. Prior skill-poisoning attacks face a reliability-stealth trade-off under this lens: YAML-header injections are reliably loaded but easily inspected, whereas stealthier body injections that place explicit malicious commands in the skill prose are less reliable because out-of-context commands invite the agent's own suspicion. We introduce POISE, a position-aware attack that compresses the trigger into a single, benign-looking body instruction, placing it at a feasible position and using a context-aware generator to blend it with nearby setup or prerequisite steps. On Skill-Inject with codex+gpt-5.2, POISE achieves an 89.3% ASR, 28.0 points above a random-placement body baseline and 2.6 points above a YAML-only baseline, while retaining the stealth advantage of body placement. That stealth is the decisive margin: because legitimate skill bodies naturally require privileged tool operations, LLM scanners are hyper-sensitive, falsely flagging 74.6% of clean skills on average across four judges and both benchmarks. Blending into these false alarms, POISE causes only 5.6% of poisoned variants to gain a new high-risk alert over their clean baselines, rendering current static defenses ineffective.

Watch Out for Your Agents! Investigating Backdoor Threats to LLM-Based Agents

Leveraging the rapid development of Large Language Models LLMs, LLM-based agents have been developed to handle various real-world applications, including finance, healthcare, and shopping, etc. It is crucial to ensure the reliability and security of LLM-based agents during applications. However, the safety issues of LLM-based agents are currently under-explored. In this work, we take the first step to investigate one of the typical safety threats, backdoor attack, to LLM-based agents. We first formulate a general framework of agent backdoor attacks, then we present a thorough analysis on the different forms of agent backdoor attacks. Specifically, from the perspective of the final attacking outcomes, the attacker can either choose to manipulate the final output distribution, or only introduce malicious behavior in the intermediate reasoning process, while keeping the final output correct. Furthermore, the former category can be divided into two subcategories based on trigger locations: the backdoor trigger can be hidden either in the user query or in an intermediate observation returned by the external environment. We propose the corresponding data poisoning mechanisms to implement the above variations of agent backdoor attacks on two typical agent tasks, web shopping and tool utilization. Extensive experiments show that LLM-based agents suffer severely from backdoor attacks, indicating an urgent need for further research on the development of defenses against backdoor attacks on LLM-based agents. Warning: This paper may contain biased content.

  • 6 authors
·
Feb 17, 2024

SoK: Agentic Retrieval-Augmented Generation (RAG): Taxonomy, Architectures, Evaluation, and Research Directions

Retrieval-Augmented Generation (RAG) systems are increasingly evolving into agentic architectures where large language models autonomously coordinate multi-step reasoning, dynamic memory management, and iterative retrieval strategies. Despite rapid industrial adoption, current research lacks a systematic understanding of Agentic RAG as a sequential decision-making system, leading to highly fragmented architectures, inconsistent evaluation methodologies, and unresolved reliability risks. This Systematization of Knowledge (SoK) paper provides the first unified framework for understanding these autonomous systems. We formalize agentic retrieval-generation loops as finite-horizon partially observable Markov decision processes, explicitly modeling their control policies and state transitions. Building upon this formalization, we develop a comprehensive taxonomy and modular architectural decomposition that categorizes systems by their planning mechanisms, retrieval orchestration, memory paradigms, and tool-invocation behaviors. We further analyze the critical limitations of traditional static evaluation practices and identify severe systemic risks inherent to autonomous loops, including compounding hallucination propagation, memory poisoning, retrieval misalignment, and cascading tool-execution vulnerabilities. Finally, we outline key doctoral-scale research directions spanning stable adaptive retrieval, cost-aware orchestration, formal trajectory evaluation, and oversight mechanisms, providing a definitive roadmap for building reliable, controllable, and scalable agentic retrieval systems.

  • 6 authors
·
Mar 6

Human Society-Inspired Approaches to Agentic AI Security: The 4C Framework

AI is moving from domain-specific autonomy in closed, predictable settings to large-language-model-driven agents that plan and act in open, cross-organizational environments. As a result, the cybersecurity risk landscape is changing in fundamental ways. Agentic AI systems can plan, act, collaborate, and persist over time, functioning as participants in complex socio-technical ecosystems rather than as isolated software components. Although recent work has strengthened defenses against model and pipeline level vulnerabilities such as prompt injection, data poisoning, and tool misuse, these system centric approaches may fail to capture risks that arise from autonomy, interaction, and emergent behavior. This article introduces the 4C Framework for multi-agent AI security, inspired by societal governance. It organizes agentic risks across four interdependent dimensions: Core (system, infrastructure, and environmental integrity), Connection (communication, coordination, and trust), Cognition (belief, goal, and reasoning integrity), and Compliance (ethical, legal, and institutional governance). By shifting AI security from a narrow focus on system-centric protection to the broader preservation of behavioral integrity and intent, the framework complements existing AI security strategies and offers a principled foundation for building agentic AI systems that are trustworthy, governable, and aligned with human values.

  • 4 authors
·
Feb 1

Beyond Function Calling: Benchmarking Tool-Using Agents under Tool-Environment Unreliability

Large language models are increasingly deployed as agents that solve tasks by interacting with external tool environments. Although recent tool-use benchmarks increasingly cover complex task settings, they still largely assume clean, stable, and trustworthy tool environments, leaving tool-environment unreliability insufficiently examined. We introduce ToolBench-X, a benchmark for evaluating agents under recoverable reliability hazards. ToolBench-X contains executable multi-step tasks across diverse domains and sequential, parallel, and mixed workflows, each paired with deterministic tools and a canonical final answer for automatic evaluation. Starting from clean tool environments, ToolBench-X injects five structured hazard types: Specification Drift, Invocation Error, Execution Failure, Output Drift, and Cross-source Conflict. Crucially, each injected instance remains solvable through at least one valid recovery path, such as retrying, fallback, verification, or cross-checking. Experiments reveal a substantial reliability gap: agents that perform well with reliable tools often fail under recoverable hazards. Further analysis shows that failures are driven less by tool-use volume or inference budget than by limited hazard diagnosis and ineffective recovery. Targeted recovery hints recover many failed tasks, while test-time scaling yields more limited gains. These results suggest that tool-use evaluation should move beyond function-call accuracy toward task completion under unreliable tool environments. The code and data is available at https://github.com/Foreverskyou/ToolBench-X.

  • 3 authors
·
Jun 23