Daily Papers

The power of Large Language Models (LLMs) has led us to investigate how they might be fine-tuned for learning the "language of molecular geometry". The fine-tuning of the LLMs using Cartesian coordinates or Z-matrices provides an extremely simple method for accurately predicting equilibrium structures and diverse sets of conformers of small organic and drug-like molecules with excellent accuracy and outperforming specialized deep learning models. While the most common representation of molecular geometries are Cartesian coordinates performs adequately, we find that the inherent invariances and relational nature of geometries represented as Z-matrices provides a better grammar for LLM adaptation. Finally, we show that enhancing an LLMs capabilities for robust prediction of small molecule geometries still retains nearly all of its pre-trained language abilities by randomly mixing in small quantities of natural language prompt-response pairs into the fine-tuning.

This is the third paper of the CayleyPy project applying artificial intelligence to problems in group theory. We announce the first public release of CayleyPy, an open source Python library for computations with Cayley and Schreier graphs. Compared with systems such as GAP and Sage, CayleyPy handles much larger graphs and performs several orders of magnitude faster. Using CayleyPy we obtained about 200 new conjectures on Cayley and Schreier graphs, focused on diameters and growth. For many Cayley graphs of symmetric groups Sn we observe quasi polynomial diameter formulas: a small set of quadratic or linear polynomials indexed by n mod s. We conjecture that this is a general phenomenon, giving efficient diameter computation despite the problem being NP hard. We propose a refinement of the Babai type conjecture on diameters of Sn: n^2/2 + 4n upper bounds in the undirected case, compared to previous O(n^2) bounds. We also provide explicit generator families, related to involutions in a square with whiskers pattern, conjectured to maximize the diameter; search confirms this for all n up to 15. We further conjecture an answer to a question posed by V M Glushkov in 1968 on directed Cayley graphs generated by a cyclic shift and a transposition. For nilpotent groups we conjecture an improvement of J S Ellenberg's results on upper unitriangular matrices over Z/pZ, showing linear dependence of diameter on p. Moreover. Some conjectures are LLM friendly, naturally stated as sorting problems verifiable by algorithms or Python code. To benchmark path finding we created more than 10 Kaggle datasets. CayleyPy works with arbitrary permutation or matrix groups and includes over 100 predefined generators. Our growth computation code outperforms GAP and Sage up to 1000 times in speed and size.

Every Cartesian three-dimensional PDE solver hides a structural secret that production CFD codes have used for half a century and that graduate-level textbooks rarely state plainly. The derivative matrices, the compact Padé line solves, the Galerkin mass inversions, the alternating-direction-implicit substeps, and even the fast Poisson and Helmholtz diagonalization transforms all factor along the coordinate axes and collapse into repeated one-dimensional banded kernels executed along the grid lines. The three-dimensional operator exists only on paper; it is never assembled, factored, or stored. This paper is the manual for that collapse. We derive the Kronecker-product algebra that makes it exact, carry it cleanly through central differences, compact schemes, tensor-product Galerkin, B-spline and isogeometric methods, collocation, ADI time stepping, and direct Poisson and Helmholtz solves, and bring into the open the three production tricks that turn the reduction into hardware-conscious floating-point throughput on real machines: the multi-right-hand-side reshape that exposes a sweep as one batched line kernel (a dense BLAS-3 GEMM when the line factor is dense or element-local, a banded or stencil kernel when it is not), the sum factorization that rescues high-order Galerkin from the O(p^{2d}) quadrature trap, and the pencil decomposition that keeps every direction contiguous across an MPI cluster. For fixed stencil width or fixed polynomial degree, the compute cost stays O(N) in the total number of unknowns N = N_x N_y N_z; the operator storage drops to O(N_x + N_y + N_z) up to bandwidth constants; direct separable Poisson and Helmholtz solvers add the expected transform cost; the line kernels are embarrassingly parallel. These facts are familiar to practitioners but rarely assembled in one place; this paper collects them and shows how to use them.

The process of camera calibration involves estimating the intrinsic and extrinsic parameters, which are essential for accurately performing tasks such as 3D reconstruction, object tracking and augmented reality. In this work, we propose a novel constraints-based loss for measuring the intrinsic (focal length: (f_x, f_y) and principal point: (p_x, p_y)) and extrinsic (baseline: (b), disparity: (d), translation: (t_x, t_y, t_z), and rotation specifically pitch: (theta_p)) camera parameters. Our novel constraints are based on geometric properties inherent in the camera model, including the anatomy of the projection matrix (vanishing points, image of world origin, axis planes) and the orthonormality of the rotation matrix. Thus we proposed a novel Unsupervised Geometric Constraint Loss (UGCL) via a multitask learning framework. Our methodology is a hybrid approach that employs the learning power of a neural network to estimate the desired parameters along with the underlying mathematical properties inherent in the camera projection matrix. This distinctive approach not only enhances the interpretability of the model but also facilitates a more informed learning process. Additionally, we introduce a new CVGL Camera Calibration dataset, featuring over 900 configurations of camera parameters, incorporating 63,600 image pairs that closely mirror real-world conditions. By training and testing on both synthetic and real-world datasets, our proposed approach demonstrates improvements across all parameters when compared to the state-of-the-art (SOTA) benchmarks. The code and the updated dataset can be found here: https://github.com/CVLABLUMS/CVGL-Camera-Calibration

Parameter-efficient fine-tuning (PEFT) has become a standard approach for adapting large pre-trained models. Amongst PEFT methods, low-rank adaptation (LoRA) has achieved notable success. However, recent studies have highlighted its limitations compared against full-rank alternatives, particularly when applied to multimodal and large language models. In this work, we present a quantitative comparison amongst full-rank and low-rank PEFT methods using a synthetic matrix approximation benchmark with controlled spectral properties. Our results confirm that LoRA struggles to approximate matrices with relatively flat spectrums or high frequency components -- signs of high effective ranks. To this end, we introduce KRAdapter, a novel PEFT algorithm that leverages the Khatri-Rao product to produce weight updates, which, by construction, tends to produce matrix product with a high effective rank. We demonstrate performance gains with KRAdapter on vision-language models up to 1B parameters and on large language models up to 8B parameters, particularly on unseen common-sense reasoning tasks. In addition, KRAdapter maintains the memory and compute efficiency of LoRA, making it a practical and robust alternative to fine-tune billion-scale parameter models.

Low-Rank Adaptation (LoRA) and its variants have shown impressive results in reducing the number of trainable parameters and memory requirements of large transformer networks while maintaining fine-tuning performance. However, the low-rank nature of the weight update inherently limits the representation power of fine-tuned models, potentially compromising performance on complex tasks. This raises a critical question: when a performance gap between LoRA and standard fine-tuning is observed, is it due to the reduced number of trainable parameters or the rank deficiency? This paper aims to answer this question by introducing RandLoRA, a parameter-efficient method that performs full-rank updates using a learned linear combinations of low-rank, non-trainable random matrices. Our method limits the number of trainable parameters by restricting optimization to diagonal scaling matrices applied to the fixed random matrices. This allows us to effectively overcome the low-rank limitations while maintaining parameter and memory efficiency during training. Through extensive experimentation across vision, language, and vision-language benchmarks, we systematically evaluate the limitations of LoRA and existing random basis methods. Our findings reveal that full-rank updates are beneficial across vision and language tasks individually, and even more so for vision-language tasks, where RandLoRA significantly reduces -- and sometimes eliminates -- the performance gap between standard fine-tuning and LoRA, demonstrating its efficacy.

While large language models (LLMs) are driving the rapid advancement of artificial intelligence, effectively and reliably training these large models remains one of the field's most significant challenges. To address this challenge, we propose POET, a novel reParameterized training algorithm that uses Orthogonal Equivalence Transformation to optimize neurons. Specifically, POET reparameterizes each neuron with two learnable orthogonal matrices and a fixed random weight matrix. Because of its provable preservation of spectral properties of weight matrices, POET can stably optimize the objective function with improved generalization. We further develop efficient approximations that make POET flexible and scalable for training large-scale neural networks. Extensive experiments validate the effectiveness and scalability of POET in training LLMs.