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Oct 16

LayerRoPE: Dynamic Depth-wise Magnitude & Angular Superposition

As data propagates through a Transformer, the norm of its hidden states grows by orders of magnitude with depth, a phenomenon framed as 'curse of depth' and nearly universally treated as a pathology to be suppressed. We take the opposite view. Across 16 pre-trained LLMs from 9 families, spanning dense, mixture-of-experts and hybrid architectures and Pre-, Peri- and Post-Norm designs, we find that this growth reflects an emergent depth-positional encoding, carried by the only learned per-layer gain on the residual stream, the normalization weight γ: with depth, γ grows in magnitude and rotates in direction, jointly encoding the layer index. We make this depth-conditioned encoding explicit with LayerRoPE, an implicit analog of RoPE along the depth axis, which replaces all layerwise γ vectors with a single shared vector and depth-conditioned scalars, at a net reduction in parameters and <0.02% change in FLOPs. Across a model ladder scaled up to 100B+ tokens, LayerRoPE consistently outperforms Pre-, Post- and Peri-Norm and Layer-Norm Scaling, reaching Pre-Norm's 1.3B loss with 3.4times less compute; LayerRoPE is the only approach that shows strong convergence and improves near monotonically as depth scales to 512 layers. It improves learning-rate sensitivity by 3-10times, and transfers naively to and consistently improves looped latent models and Vision Transformers. Inspecting its learned schedule inverts the prevailing premise: LayerRoPE does not shrink the residual stream but widens it, damping what each block reads while amplifying what it writes. Depth stability, our results suggest, calls not for suppressing the residual stream, but for depth-conditioned regulation of the computational blocks it feeds.

  • 2 authors
·
Oct 5

FPicker: Topology-Guided Evolution for Filament Tracing in Low-SNR Microscopy

Automating filament tracing in Cryo-Electron Microscopy (Cryo-EM) is essential for 3D helical reconstruction but challenged by intersecting topologies and extremely low Signal-to-Noise Ratios (SNR = σ_s^2/σ_n^2 < 0.1 or -10 dB). Existing paradigms fail: pixel-wise segmenters suffer from severe topological fracturing, box-based detectors face ghost center drift, sequential trackers derail due to error accumulation, and traditional active contours collapse under artificial closed-curve constraints. To resolve these bottlenecks, we present FPicker, the first topology-guided framework reconciling these incompatibilities. It unifies perception via a center-endpoint representation and an open-curve evolution module to explicitly model non-cyclic connectivity. On simulated benchmarks, FPicker outperforms top baselines by over 40% relative gain in mean spatio-angular precision (mSAP) and reduces topological gap rates by over 60% under extreme noise (-20 dB). By learning intrinsic physical geometry rather than local texture, FPicker demonstrates strong potential as a resilient geometric backbone. Its zero-shot performance on the real-world EMPIAR dataset exhibits robust topological resistance, achieving a state-of-the-art 82.9\% mSAP upon fine-tuning. Our results also suggest modeling physical priors is a highly robust path toward bridging the sim-to-real gap in signal-starved scientific imaging. The code is publicly available at: https://github.com/tomzhaosky/FPicker.

  • 3 authors
·
Sep 7

EAGOR: Embodied Reasoning in Omni-direction

Omni-directional (360°) cameras provide embodied agents with a holistic view of their surroundings, making them suited for directional reasoning in tasks such as navigation and object search. Existing Vision Language Models (VLMs) project 360° observations to 2D equirectangular projection (ERP) images and process them using architectures designed for perspective images. However, they ignore the spherical nature of 360° observations, where each pixel represents a viewing direction relative to the agent. Consequently, their direction estimates often become inconsistent under camera view transformations caused by agent motion. This limitation is particularly critical for map-free navigation, where the agent must continuously estimate the target direction in its egocentric frame. We propose EAGOR, a training-free, geometry-aware framework for embodied 360° directional reasoning. Instead of predicting target directions as ERP image coordinates, EAGOR formulates directional reasoning as recursive Bayesian estimation directly on the sphere. It maintains a continuous belief over target directions and propagates it equivariantly under agent motion without training the backbone VLMs. To achieve this, we introduce the Spherical Harmonic Belief Field (SH-BF), whose spherical harmonic representation provides a globally defined, rotation-aware basis for directional estimation on the spherical manifold. This formulation eliminates ERP seam discontinuities, latitude distortions, and interpolation errors. We evaluate EAGOR on two benchmark datasets and real-world experiments with a legged robot across directional reasoning tasks. EAGOR consistently outperforms existing methods, achieving average relative gains of +34.4% and +45.6% on HOS and OSR-Bench, respectively, while improving navigation success by +14.6%, reducing step count by 17.7%, and lowering mean angular error by 24.5%.

  • 5 authors
·
Jul 6