Daily Papers

Failures in multi-turn reasoning models are largely invisible to terminal-score evaluation. A model can lock onto an unsafe stance early in a long dialogue, yet its final-turn refusal rate may appear indistinguishable from a robustly aligned baseline. To expose these hidden temporal dynamics, we propose a trace-level diagnostic - the CoT-Output 2x2 safety matrix. This framework labels every turn along two independent axes (internal reasoning and visible output), yielding four operationally defined failure cells: robust alignment, alignment faking, overt jailbreak, and a distinct failure mode we term context-injection failure (where the CoT maintains safe reasoning, but the visible output produces harm, highlighting a multi-turn manifestation of reasoning unfaithfulness). We evaluate three distilled reasoning targets against a fixed attacker across five oversight conditions, collecting 6750 turn-level observations on the Information-Hazard scenario. Our analysis reveals two reproducible vulnerabilities: an oversight paradox where explicit monitoring cues paradoxically increase alignment-faking rates rather than suppress them, and a context-injection failure where models lock onto unsafe external outputs despite safe internal states. We release the full dataset of multi-turn dialogues and CoT traces to support follow-up trace-diagnostic research.

We revisit a universally accepted but under-examined design choice in every modern LLM: a token index is looked up once at the input embedding layer and then permanently discarded. This single-injection assumption induces two structural failures: (i) the Rare Token Problem, where a Zipf-type distribution of vocabulary causes rare-token embeddings are chronically under-trained due to receiving a fraction of the cumulative gradient signal compared to common tokens; and (ii) the Contextual Collapse Problem, where limited parameters models map distributionally similar tokens to indistinguishable hidden states. As an attempt to address both, we propose TIDE, which augments the standard transformer with EmbeddingMemory: an ensemble of K independent MemoryBlocks that map token indices to context-free semantic vectors, computed once and injected into every layer through a depth-conditioned softmax router with a learnable null bank. We theoretically and empirically establish the benefits of TIDE in addressing the issues associated with single-token identity injection as well as improve performance across multiple language modeling and downstream tasks.

Despite the impressive generative capabilities of diffusion models, existing diffusion model-based style transfer methods require inference-stage optimization (e.g. fine-tuning or textual inversion of style) which is time-consuming, or fails to leverage the generative ability of large-scale diffusion models. To address these issues, we introduce a novel artistic style transfer method based on a pre-trained large-scale diffusion model without any optimization. Specifically, we manipulate the features of self-attention layers as the way the cross-attention mechanism works; in the generation process, substituting the key and value of content with those of style image. This approach provides several desirable characteristics for style transfer including 1) preservation of content by transferring similar styles into similar image patches and 2) transfer of style based on similarity of local texture (e.g. edge) between content and style images. Furthermore, we introduce query preservation and attention temperature scaling to mitigate the issue of disruption of original content, and initial latent Adaptive Instance Normalization (AdaIN) to deal with the disharmonious color (failure to transfer the colors of style). Our experimental results demonstrate that our proposed method surpasses state-of-the-art methods in both conventional and diffusion-based style transfer baselines.

Prompt injection remains a major security risk for large language models. However, the efficacy of existing guardrail models in context-aware settings remains underexplored, as they often rely on static attack benchmarks. Additionally, they have over-defense tendencies. We introduce CAPTURE, a novel context-aware benchmark assessing both attack detection and over-defense tendencies with minimal in-domain examples. Our experiments reveal that current prompt injection guardrail models suffer from high false negatives in adversarial cases and excessive false positives in benign scenarios, highlighting critical limitations. To demonstrate our framework's utility, we train CaptureGuard on our generated data. This new model drastically reduces both false negative and false positive rates on our context-aware datasets while also generalizing effectively to external benchmarks, establishing a path toward more robust and practical prompt injection defenses.

Large Language Models (LLMs) have demonstrated exceptional proficiency in instruction-following, becoming increasingly crucial across various applications. However, this capability brings with it the risk of prompt injection attacks, where attackers inject instructions into LLMs' input to elicit undesirable actions or content. Understanding the robustness of LLMs against such attacks is vital for their safe implementation. In this work, we establish a benchmark to evaluate the robustness of instruction-following LLMs against prompt injection attacks. Our objective is to determine the extent to which LLMs can be influenced by injected instructions and their ability to differentiate between these injected and original target instructions. Through extensive experiments with leading instruction-following LLMs, we uncover significant vulnerabilities in their robustness to such attacks. Our results indicate that some models are overly tuned to follow any embedded instructions in the prompt, overly focusing on the latter parts of the prompt without fully grasping the entire context. By contrast, models with a better grasp of the context and instruction-following capabilities will potentially be more susceptible to compromise by injected instructions. This underscores the need to shift the focus from merely enhancing LLMs' instruction-following capabilities to improving their overall comprehension of prompts and discernment of instructions that are appropriate to follow. We hope our in-depth analysis offers insights into the underlying causes of these vulnerabilities, aiding in the development of future solutions. Code and data are available at https://github.com/Leezekun/instruction-following-robustness-eval

We propose a new long-context financial benchmark, FailSafeQA, designed to test the robustness and context-awareness of LLMs against six variations in human-interface interactions in LLM-based query-answer systems within finance. We concentrate on two case studies: Query Failure and Context Failure. In the Query Failure scenario, we perturb the original query to vary in domain expertise, completeness, and linguistic accuracy. In the Context Failure case, we simulate the uploads of degraded, irrelevant, and empty documents. We employ the LLM-as-a-Judge methodology with Qwen2.5-72B-Instruct and use fine-grained rating criteria to define and calculate Robustness, Context Grounding, and Compliance scores for 24 off-the-shelf models. The results suggest that although some models excel at mitigating input perturbations, they must balance robust answering with the ability to refrain from hallucinating. Notably, Palmyra-Fin-128k-Instruct, recognized as the most compliant model, maintained strong baseline performance but encountered challenges in sustaining robust predictions in 17% of test cases. On the other hand, the most robust model, OpenAI o3-mini, fabricated information in 41% of tested cases. The results demonstrate that even high-performing models have significant room for improvement and highlight the role of FailSafeQA as a tool for developing LLMs optimized for dependability in financial applications. The dataset is available at: https://huggingface.co/datasets/Writer/FailSafeQA

Text-to-image diffusion models excel at generating high-quality, diverse images from natural language prompts. However, they often fail to produce semantically accurate results when the prompt contains concept combinations that contradict their learned priors. We define this failure mode as contextual contradiction, where one concept implicitly negates another due to entangled associations learned during training. To address this, we propose a stage-aware prompt decomposition framework that guides the denoising process using a sequence of proxy prompts. Each proxy prompt is constructed to match the semantic content expected to emerge at a specific stage of denoising, while ensuring contextual coherence. To construct these proxy prompts, we leverage a large language model (LLM) to analyze the target prompt, identify contradictions, and generate alternative expressions that preserve the original intent while resolving contextual conflicts. By aligning prompt information with the denoising progression, our method enables fine-grained semantic control and accurate image generation in the presence of contextual contradictions. Experiments across a variety of challenging prompts show substantial improvements in alignment to the textual prompt.

As Large Language Model (LLM) agents increasingly execute complex, autonomous software engineering tasks, developers rely on natural language instruction files such as AGENTS.md to express project-specific coding conventions, tooling restrictions, and architectural boundaries. However, because these instructions remain passive text, agents frequently violate documented constraints due to context window saturation or conflicting local context. In autonomous settings without real-time human supervision, such violations rapidly compound into technical debt. To ground autonomous agents in repository constraints, we introduce ContextCov, a framework that transforms passive natural language instructions into executable guardrails. Unlike prompt-only or reflection-only compliance approaches, ContextCov compiles documented constraints into three complementary checks: static AST queries for code patterns, runtime shell shims that intercept prohibited commands, and architectural validators that enforce structural rules. Acting as an automated, continuous reviewer, ContextCov intercepts agent actions and returns immediate, reproducible violation traces, enabling self-correction before non-compliant changes are finalized. We evaluate ContextCov on SWE-bench Lite (12 repositories, 300 tasks). Compared to prompt-only and LLM reflection baselines, ContextCov achieves 88.3% constraint compliance (vs. 67.0% and 50.3%) with 3.4x lower feedback cost, while maintaining functional correctness. The source code and evaluation results are available at https://github.com/reSHARMA/ContextCov.

Recent advances in Large Language Models (LLMs) have revolutionized generative systems, achieving excellent performance across diverse domains. Although these models perform well in controlled environments, their real-world applications frequently encounter inputs containing both essential and irrelevant details. Our investigation has revealed a critical vulnerability in LLMs, which we term Contextual Distraction Vulnerability (CDV). This phenomenon arises when models fail to maintain consistent performance on questions modified with semantically coherent but irrelevant context. To systematically investigate this vulnerability, we propose an efficient tree-based search methodology to automatically generate CDV examples. Our approach successfully generates CDV examples across four datasets, causing an average performance degradation of approximately 45% in state-of-the-art LLMs. To address this critical issue, we explore various mitigation strategies and find that post-targeted training approaches can effectively enhance model robustness against contextual distractions. Our findings highlight the fundamental nature of CDV as an ability-level challenge rather than a knowledge-level issue since models demonstrate the necessary knowledge by answering correctly in the absence of distractions. This calls the community's attention to address CDV during model development to ensure reliability. The code is available at https://github.com/wyf23187/LLM_CDV.

Large language model (LLM) providers boast big numbers for maximum context window sizes. To test the real world use of context windows, we 1) define a concept of maximum effective context window, 2) formulate a testing method of a context window's effectiveness over various sizes and problem types, and 3) create a standardized way to compare model efficacy for increasingly larger context window sizes to find the point of failure. We collected hundreds of thousands of data points across several models and found significant differences between reported Maximum Context Window (MCW) size and Maximum Effective Context Window (MECW) size. Our findings show that the MECW is, not only, drastically different from the MCW but also shifts based on the problem type. A few top of the line models in our test group failed with as little as 100 tokens in context; most had severe degradation in accuracy by 1000 tokens in context. All models fell far short of their Maximum Context Window by as much as 99 percent. Our data reveals the Maximum Effective Context Window shifts based on the type of problem provided, offering clear and actionable insights into how to improve model accuracy and decrease model hallucination rates.

Agentic language-model systems increasingly rely on mutable execution contexts, including files, memory, tools, skills, and auxiliary artifacts, creating security risks beyond explicit user prompts. This paper presents DeepTrap, an automated framework for discovering contextual vulnerabilities in OpenClaw. DeepTrap formulates adversarial context manipulation as a black-box trajectory-level optimization problem that balances risk realization, benign-task preservation, and stealth. It combines risk-conditioned evaluation, multi-objective trajectory scoring, reward-guided beam search, and reflection-based deep probing to identify high-value compromised contexts. We construct a 42-case benchmark spanning six vulnerability classes and seven operational scenarios, and evaluate nine target models using attack and utility grading scores. Results show that contextual compromise can induce substantial unsafe behavior while preserving user-facing task completion, demonstrating that final-response evaluation is insufficient. The findings highlight the need for execution-centric security evaluation of agentic AI systems. Our code is released at: https://github.com/ZJUICSR/DeepTrap

LLM-based Software Engineering agents face a critical bottleneck: context length limitations cause failures on complex, long-horizon tasks. One promising solution is to encode context as continuous embeddings rather than discrete tokens, enabling denser information storage. We apply the recently proposed In-Context Autoencoder for this purpose. While the method performs well on single-shot common-knowledge and code-understanding tasks, our experiments demonstrate that it fails on multi-step agentic coding tasks. In this paper, we explore this phenomenon and discuss possible factors contributing to this failure.

Large Language Models (LLMs) and Retrieval-Augmented Generation (RAG) systems are increasingly integrated into clinical workflows; however, prompt injection attacks can steer these systems toward clinically unsafe or misleading outputs. We introduce the Medical Prompt Injection Benchmark (MPIB), a dataset-and-benchmark suite for evaluating clinical safety under both direct prompt injection and indirect, RAG-mediated injection across clinically grounded tasks. MPIB emphasizes outcome-level risk via the Clinical Harm Event Rate (CHER), which measures high-severity clinical harm events under a clinically grounded taxonomy, and reports CHER alongside Attack Success Rate (ASR) to disentangle instruction compliance from downstream patient risk. The benchmark comprises 9,697 curated instances constructed through multi-stage quality gates and clinical safety linting. Evaluating MPIB across a diverse set of baseline LLMs and defense configurations, we find that ASR and CHER can diverge substantially, and that robustness depends critically on whether adversarial instructions appear in the user query or in retrieved context. We release MPIB with evaluation code, adversarial baselines, and comprehensive documentation to support reproducible and systematic research on clinical prompt injection. Code and data are available at GitHub (code) and Hugging Face (data).

Incorporating external context can significantly enhance the response quality of Large Language Models (LLMs). However, real-world contexts often mix relevant information with disproportionate inappropriate content, posing reliability risks. How do LLMs process and prioritize mixed context? To study this, we introduce the Poisoned Context Testbed, pairing queries with real-world contexts containing relevant and inappropriate content. Inspired by associative learning in animals, we adapt the Rescorla-Wagner (RW) model from neuroscience to quantify how competing contextual signals influence LLM outputs. Our adapted model reveals a consistent behavioral pattern: LLMs exhibit a strong tendency to incorporate information that is less prevalent in the context. This susceptibility is harmful in real-world settings, where small amounts of inappropriate content can substantially degrade response quality. Empirical evaluations on our testbed further confirm this vulnerability. To tackle this, we introduce RW-Steering, a two-stage finetuning-based approach that enables the model to internally identify and ignore inappropriate signals. Unlike prior methods that rely on extensive supervision across diverse context mixtures, RW-Steering generalizes robustly across varying proportions of inappropriate content. Experiments show that our best fine-tuned model improves response quality by 39.8% and reverses the undesirable behavior curve, establishing RW-Steering as a robust, generalizable context engineering solution for improving LLM safety in real-world use.

As Multi-Agent Systems (MAS) become increasingly autonomous and complex, understanding their error modes is critical for ensuring their reliability and safety. However, research in this area has been severely hampered by the lack of large-scale, diverse datasets with precise, ground-truth error labels. To address this bottleneck, we introduce AEGIS, a novel framework for Automated Error Generation and Identification for Multi-Agent Systems. By systematically injecting controllable and traceable errors into initially successful trajectories, we create a rich dataset of realistic failures. This is achieved using a context-aware, LLM-based adaptive manipulator that performs sophisticated attacks like prompt injection and response corruption to induce specific, predefined error modes. We demonstrate the value of our dataset by exploring three distinct learning paradigms for the error identification task: Supervised Fine-Tuning, Reinforcement Learning, and Contrastive Learning. Our comprehensive experiments show that models trained on AEGIS data achieve substantial improvements across all three learning paradigms. Notably, several of our fine-tuned models demonstrate performance competitive with or superior to proprietary systems an order of magnitude larger, validating our automated data generation framework as a crucial resource for developing more robust and interpretable multi-agent systems. Our project website is available at https://kfq20.github.io/AEGIS-Website.

Context: Bugs in code are inevitable and can lead to severe consequences, ranging from security vulnerabilities to operational failures. Debugging software remains challenging despite advances in testing and verification, often requiring extensive manual effort. Learning-based automated program repair (APR) has shown promise in reducing the time, effort, and cost of manually fixing bugs. However, existing techniques face several challenges, including language-dependent strategies, limited bug context utilization, and difficulties in handling bugs that span multiple locations in the code. Objective: This paper introduces MultiMend, a learning-based APR approach designed to improve repair performance on multiple programming languages with language-independent context augmentation and multi-hunk patch generation. Method: MultiMend fine-tunes a pre-trained encoder-decoder transformer model (CodeT5) to generate bug-fixing patches. It embeds source code lines and applies retrieval-augmented generation to augment the buggy context with relevant lines during patch generation. The approach systematically constructs patches for multi-hunk bugs to reduce the needed patch validations. We evaluate MultiMend on four benchmarks with four programming languages and compare it with state-of-the-art methods. Results: Experimental results show that MultiMend achieves competitive effectiveness and efficiency against compared tools. Across all benchmarks, MultiMend fixes 2,077 bugs, of which 1,455 are identical to the developer's patch, and 106 are for multi-hunk bugs. Both context augmentation and multi-hunk patch generation positively contribute to the results. Conclusion: MultiMend shows promising performance across benchmarks. The findings highlight its applicability to real-world software maintenance and its potential to reduce manual debugging efforts.

Central to many self-improvement pipelines for large language models (LLMs) is the assumption that models can improve by reflecting on past mistakes. We study a phenomenon termed contextual drag: the presence of failed attempts in the context biases subsequent generations toward structurally similar errors. Across evaluations of 11 proprietary and open-weight models on 8 reasoning tasks, contextual drag induces 10-20% performance drops, and iterative self-refinement in models with severe contextual drag can collapse into self-deterioration. Structural analysis using tree edit distance reveals that subsequent reasoning trajectories inherit structurally similar error patterns from the context. We demonstrate that neither external feedback nor successful self-verification suffices to eliminate this effect. While mitigation strategies such as fallback-behavior fine-tuning and context denoising yield partial improvements, they fail to fully restore baseline performance, positioning contextual drag as a persistent failure mode in current reasoning architectures.

The proliferation of agentic AI coding assistants, including Claude Code, GitHub Copilot, Cursor, and emerging skill-based architectures, has fundamentally transformed software development workflows. These systems leverage Large Language Models (LLMs) integrated with external tools, file systems, and shell access through protocols like the Model Context Protocol (MCP). However, this expanded capability surface introduces critical security vulnerabilities. In this Systematization of Knowledge (SoK) paper, we present a comprehensive analysis of prompt injection attacks targeting agentic coding assistants. We propose a novel three-dimensional taxonomy categorizing attacks across delivery vectors, attack modalities, and propagation behaviors. Our meta-analysis synthesizes findings from 78 recent studies (2021--2026), consolidating evidence that attack success rates against state-of-the-art defenses exceed 85\% when adaptive attack strategies are employed. We systematically catalog 42 distinct attack techniques spanning input manipulation, tool poisoning, protocol exploitation, multimodal injection, and cross-origin context poisoning. Through critical analysis of 18 defense mechanisms reported in prior work, we identify that most achieve less than 50\% mitigation against sophisticated adaptive attacks. We contribute: (1) a unified taxonomy bridging disparate attack classifications, (2) the first systematic analysis of skill-based architecture vulnerabilities with concrete exploit chains, and (3) a defense-in-depth framework grounded in the limitations we identify. Our findings indicate that the security community must treat prompt injection as a first-class vulnerability class requiring architectural-level mitigations rather than ad-hoc filtering approaches.

Large Language Models (LLMs), renowned for their superior proficiency in language comprehension and generation, stimulate a vibrant ecosystem of applications around them. However, their extensive assimilation into various services introduces significant security risks. This study deconstructs the complexities and implications of prompt injection attacks on actual LLM-integrated applications. Initially, we conduct an exploratory analysis on ten commercial applications, highlighting the constraints of current attack strategies in practice. Prompted by these limitations, we subsequently formulate HouYi, a novel black-box prompt injection attack technique, which draws inspiration from traditional web injection attacks. HouYi is compartmentalized into three crucial elements: a seamlessly-incorporated pre-constructed prompt, an injection prompt inducing context partition, and a malicious payload designed to fulfill the attack objectives. Leveraging HouYi, we unveil previously unknown and severe attack outcomes, such as unrestricted arbitrary LLM usage and uncomplicated application prompt theft. We deploy HouYi on 36 actual LLM-integrated applications and discern 31 applications susceptible to prompt injection. 10 vendors have validated our discoveries, including Notion, which has the potential to impact millions of users. Our investigation illuminates both the possible risks of prompt injection attacks and the possible tactics for mitigation.

Despite the huge success of Large Language Models (LLMs) in coding assistants like GitHub Copilot, these models struggle to understand the context present in the repository (e.g., imports, parent classes, files with similar names, etc.), thereby producing inaccurate code completions. This effect is more pronounced when using these assistants for repositories that the model has not seen during training, such as proprietary software or work-in-progress code projects. Recent work has shown the promise of using context from the repository during inference. In this work, we extend this idea and propose RepoFusion, a framework to train models to incorporate relevant repository context. Experiments on single-line code completion show that our models trained with repository context significantly outperform much larger code models as CodeGen-16B-multi (sim73times larger) and closely match the performance of the sim 70times larger StarCoderBase model that was trained with the Fill-in-the-Middle objective. We find these results to be a novel and compelling demonstration of the gains that training with repository context can bring. We carry out extensive ablation studies to investigate the impact of design choices such as context type, number of contexts, context length, and initialization within our framework. Lastly, we release Stack-Repo, a dataset of 200 Java repositories with permissive licenses and near-deduplicated files that are augmented with three types of repository contexts. Additionally, we are making available the code and trained checkpoints for our work. Our released resources can be found at https://huggingface.co/RepoFusion.

Large language models (LLMs) and their applications, such as agents, are highly vulnerable to prompt injection attacks. State-of-the-art prompt injection detection methods have the following limitations: (1) their effectiveness degrades significantly as context length increases, and (2) they lack explicit rules that define what constitutes prompt injection, causing detection decisions to be implicit, opaque, and difficult to reason about. In this work, we propose AgentWatcher to address the above two limitations. To address the first limitation, AgentWatcher attributes the LLM's output (e.g., the action of an agent) to a small set of causally influential context segments. By focusing detection on a relatively short text, AgentWatcher can be scalable to long contexts. To address the second limitation, we define a set of rules specifying what does and does not constitute a prompt injection, and use a monitor LLM to reason over these rules based on the attributed text, making the detection decisions more explainable. We conduct a comprehensive evaluation on tool-use agent benchmarks and long-context understanding datasets. The experimental results demonstrate that AgentWatcher can effectively detect prompt injection and maintain utility without attacks. The code is available at https://github.com/wang-yanting/AgentWatcher.

Agent skills provide a lightweight mechanism for extending general-purpose agents, but their open format exposes them to skill-poisoning attacks. A practically dangerous injection must stay invisible: if executing the payload derails the user's legitimate task, the resulting failure signal invites inspection of the skill. We therefore evaluate attacks by Attack Success Rate, which requires the injected payload to execute and the user's task to still pass its verifier in the same trial. Prior skill-poisoning attacks face a reliability-stealth trade-off under this lens: YAML-header injections are reliably loaded but easily inspected, whereas stealthier body injections that place explicit malicious commands in the skill prose are less reliable because out-of-context commands invite the agent's own suspicion. We introduce POISE, a position-aware attack that compresses the trigger into a single, benign-looking body instruction, placing it at a feasible position and using a context-aware generator to blend it with nearby setup or prerequisite steps. On Skill-Inject with codex+gpt-5.2, POISE achieves an 89.3% ASR, 28.0 points above a random-placement body baseline and 2.6 points above a YAML-only baseline, while retaining the stealth advantage of body placement. That stealth is the decisive margin: because legitimate skill bodies naturally require privileged tool operations, LLM scanners are hyper-sensitive, falsely flagging 74.6% of clean skills on average across four judges and both benchmarks. Blending into these false alarms, POISE causes only 5.6% of poisoned variants to gain a new high-risk alert over their clean baselines, rendering current static defenses ineffective.

While recent advancements in large language model (LLM) alignment have enabled the effective identification of malicious objectives involving scene nesting and keyword rewriting, our study reveals that these methods remain inadequate at detecting malicious objectives expressed through context within nested harmless objectives. This study identifies a previously overlooked vulnerability, which we term Attack via Implicit Reference (AIR). AIR decomposes a malicious objective into permissible objectives and links them through implicit references within the context. This method employs multiple related harmless objectives to generate malicious content without triggering refusal responses, thereby effectively bypassing existing detection techniques.Our experiments demonstrate AIR's effectiveness across state-of-the-art LLMs, achieving an attack success rate (ASR) exceeding 90% on most models, including GPT-4o, Claude-3.5-Sonnet, and Qwen-2-72B. Notably, we observe an inverse scaling phenomenon, where larger models are more vulnerable to this attack method. These findings underscore the urgent need for defense mechanisms capable of understanding and preventing contextual attacks. Furthermore, we introduce a cross-model attack strategy that leverages less secure models to generate malicious contexts, thereby further increasing the ASR when targeting other models.Our code and jailbreak artifacts can be found at https://github.com/Lucas-TY/llm_Implicit_reference.

Safety benchmark scores provide incomplete evidence of deployment readiness: aligned language models often adhere to rigid rules even when a situational update flips which action is safe. We term this failure brittle safety. To diagnose it, we introduce context-flip evaluation, testing 12 models across a safety benchmark (PacifAIst) and two commonsense controls using paired variants where the nominally safe action produces harm. Three findings emerge. First, brittle safety is safety-specific: all 12 models exhibit a safety-commonsense gap (mean +17.4 pp). Baseline accuracy fails to predict brittleness: among models above 90% baseline accuracy, brittleness rates range from 13.7% to 90.0%. Second, failures stem from policy override rather than miscomprehension: despite acknowledging the context change in every case, models persist via three distinct mechanisms that vary by update type and model family. Third, on a hand-audited probe of catastrophic consequence-flip scenarios, standard action-level guardrails catch none, while a state-aware validator catches all without false alarms on correct interventions. This indicates that action-level content moderation is systematically blind to consequence-flips, motivating state-aware architectural alternatives. We release our protocol, perturbed benchmarks, and deployment probe.

We investigate long-context vulnerabilities in Large Language Models (LLMs) through Many-Shot Jailbreaking (MSJ). Our experiments utilize context length of up to 128K tokens. Through comprehensive analysis with various many-shot attack settings with different instruction styles, shot density, topic, and format, we reveal that context length is the primary factor determining attack effectiveness. Critically, we find that successful attacks do not require carefully crafted harmful content. Even repetitive shots or random dummy text can circumvent model safety measures, suggesting fundamental limitations in long-context processing capabilities of LLMs. The safety behavior of well-aligned models becomes increasingly inconsistent with longer contexts. These findings highlight significant safety gaps in context expansion capabilities of LLMs, emphasizing the need for new safety mechanisms.

LLM agents are evolving rapidly, powered by code execution, tools, and the recently introduced agent skills feature. Skills allow users to extend LLM applications with specialized third-party code, knowledge, and instructions. Although this can extend agent capabilities to new domains, it creates an increasingly complex agent supply chain, offering new surfaces for prompt injection attacks. We identify skill-based prompt injection as a significant threat and introduce SkillInject, a benchmark evaluating the susceptibility of widely-used LLM agents to injections through skill files. SkillInject contains 202 injection-task pairs with attacks ranging from obviously malicious injections to subtle, context-dependent attacks hidden in otherwise legitimate instructions. We evaluate frontier LLMs on SkillInject, measuring both security in terms of harmful instruction avoidance and utility in terms of legitimate instruction compliance. Our results show that today's agents are highly vulnerable with up to 80% attack success rate with frontier models, often executing extremely harmful instructions including data exfiltration, destructive action, and ransomware-like behavior. They furthermore suggest that this problem will not be solved through model scaling or simple input filtering, but that robust agent security will require context-aware authorization frameworks. Our benchmark is available at https://www.skill-inject.com/.

The integration of large language models with external content has enabled applications such as Microsoft Copilot but also introduced vulnerabilities to indirect prompt injection attacks. In these attacks, malicious instructions embedded within external content can manipulate LLM outputs, causing deviations from user expectations. To address this critical yet under-explored issue, we introduce the first benchmark for indirect prompt injection attacks, named BIPIA, to assess the risk of such vulnerabilities. Using BIPIA, we evaluate existing LLMs and find them universally vulnerable. Our analysis identifies two key factors contributing to their success: LLMs' inability to distinguish between informational context and actionable instructions, and their lack of awareness in avoiding the execution of instructions within external content. Based on these findings, we propose two novel defense mechanisms-boundary awareness and explicit reminder-to address these vulnerabilities in both black-box and white-box settings. Extensive experiments demonstrate that our black-box defense provides substantial mitigation, while our white-box defense reduces the attack success rate to near-zero levels, all while preserving the output quality of LLMs. We hope this work inspires further research into securing LLM applications and fostering their safe and reliable use.

Multi-modal Large Language Models (MLLMs) have achieved remarkable performance across a wide range of visual reasoning tasks, yet their vulnerability to safety risks remains a pressing concern. While prior research primarily focuses on jailbreak defenses that detect and refuse explicitly unsafe inputs, such approaches often overlook contextual safety, which requires models to distinguish subtle contextual differences between scenarios that may appear similar but diverge significantly in safety intent. In this work, we present MM-SafetyBench++, a carefully curated benchmark designed for contextual safety evaluation. Specifically, for each unsafe image-text pair, we construct a corresponding safe counterpart through minimal modifications that flip the user intent while preserving the underlying contextual meaning, enabling controlled evaluation of whether models can adapt their safety behaviors based on contextual understanding. Further, we introduce EchoSafe, a training-free framework that maintains a self-reflective memory bank to accumulate and retrieve safety insights from prior interactions. By integrating relevant past experiences into current prompts, EchoSafe enables context-aware reasoning and continual evolution of safety behavior during inference. Extensive experiments on various multi-modal safety benchmarks demonstrate that EchoSafe consistently achieves superior performance, establishing a strong baseline for advancing contextual safety in MLLMs. All benchmark data and code are available at https://echosafe-mllm.github.io.

In Agentic AI, Large Language Models (LLMs) are increasingly used in the orchestration layer to coordinate multiple agents and to interact with external services, retrieval components, and shared memory. In this setting, failures are not limited to incorrect final outputs. They also arise from long-horizon interaction, stochastic decisions, and external side effects (such as API calls, database writes, and message sends). Common failures include non-termination, role drift, propagation of unsupported claims, and attacks via untrusted context or external channels. This paper presents an assurance framework for such Agentic AI systems. Executions are instrumented as Message-Action Traces (MAT) with explicit step and trace contracts. Contracts provide machine-checkable verdicts, localize the first violating step, and support deterministic replay. The framework includes stress testing, formulated as a budgeted counterexample search over bounded perturbations. It also supports structured fault injection at service, retrieval, and memory boundaries to assess containment under realistic operational faults and degraded conditions. Finally, governance is treated as a runtime component, enforcing per-agent capability limits and action mediation (allow, rewrite, block) at the language-to-action boundary. To support comparative evaluations across stochastic seeds, models, and orchestration configurations, the paper defines trace-based metrics for task success, termination reliability, contract compliance, factuality indicators, containment rate, and governance outcome distributions. More broadly, the framework is intended as a common abstraction to support testing and evaluation of multi-agent LLM systems, and to facilitate reproducible comparison across orchestration designs and configurations.

Large Language Models (LLMs) have demonstrated impressive capabilities in code generation. However, current evaluation datasets suffer from issues such as the lack of runnable test cases, deviation from the distribution of real-world code, and the ability to evaluate only the Python language. These limitations undermine the credibility of the evaluation results. To address these limitations, we introduce MRG-Bench (Multi-language Repository-level Code Generation Benchmark), a novel dataset that provides a more accurate evaluation of LLMs in practical repository-level code generation tasks. MRG-Bench has three main features: (1) practical data sourced from real-world code repositories that align to the practical distribution, (2) multiple programming languages support, including Python, Java, and Go, and (3) project-level runnable test cases to assess the quality of the generated code. Based on MRG-Bench, we conducted extensive experiments including large language models, long-context models, and RAG-related methods. These evaluation results demonstrate that current repository-level code generation techniques suffer from significant performance deficiencies. To further investigate why models fail, we designed novel experiments to annotate the underlying causes of generation errors. The results explicitly show that the majority of methods suffer from "difficulty in understanding user requirements," failing to comprehend their assigned tasks accurately. Moreover, the impact of different repository-level contexts on this issue exhibits significant disparities across different programming languages, suggesting that, in practice, specialized contextual information needs to be designed for different languages.

This study systematically analyzes the vulnerability of 36 large language models (LLMs) to various prompt injection attacks, a technique that leverages carefully crafted prompts to elicit malicious LLM behavior. Across 144 prompt injection tests, we observed a strong correlation between model parameters and vulnerability, with statistical analyses, such as logistic regression and random forest feature analysis, indicating that parameter size and architecture significantly influence susceptibility. Results revealed that 56 percent of tests led to successful prompt injections, emphasizing widespread vulnerability across various parameter sizes, with clustering analysis identifying distinct vulnerability profiles associated with specific model configurations. Additionally, our analysis uncovered correlations between certain prompt injection techniques, suggesting potential overlaps in vulnerabilities. These findings underscore the urgent need for robust, multi-layered defenses in LLMs deployed across critical infrastructure and sensitive industries. Successful prompt injection attacks could result in severe consequences, including data breaches, unauthorized access, or misinformation. Future research should explore multilingual and multi-step defenses alongside adaptive mitigation strategies to strengthen LLM security in diverse, real-world environments.

How do language models use information provided as context when generating a response? Can we infer whether a particular generated statement is actually grounded in the context, a misinterpretation, or fabricated? To help answer these questions, we introduce the problem of context attribution: pinpointing the parts of the context (if any) that led a model to generate a particular statement. We then present ContextCite, a simple and scalable method for context attribution that can be applied on top of any existing language model. Finally, we showcase the utility of ContextCite through three applications: (1) helping verify generated statements (2) improving response quality by pruning the context and (3) detecting poisoning attacks. We provide code for ContextCite at https://github.com/MadryLab/context-cite.

The Model Context Protocol (MCP) has emerged as a de facto standard for integrating Large Language Models with external tools, yet no formal security analysis of the protocol specification exists. We present the first rigorous security analysis of MCP's architectural design, identifying three fundamental protocol-level vulnerabilities: (1) absence of capability attestation allowing servers to claim arbitrary permissions, (2) bidirectional sampling without origin authentication enabling server-side prompt injection, and (3) implicit trust propagation in multi-server configurations. We implement MCPBench, a novel framework bridging existing agent security benchmarks to MCP-compliant infrastructure, enabling direct measurement of protocol-specific attack surfaces. Through controlled experiments on 847 attack scenarios across five MCP server implementations, we demonstrate that MCP's architectural choices amplify attack success rates by 23--41\% compared to equivalent non-MCP integrations. We propose MCPSec, a backward-compatible protocol extension adding capability attestation and message authentication, reducing attack success rates from 52.8\% to 12.4\% with median latency overhead of 8.3ms per message. Our findings establish that MCP's security weaknesses are architectural rather than implementation-specific, requiring protocol-level remediation.

This paper presents PyResBugs, a curated dataset of residual bugs, i.e., defects that persist undetected during traditional testing but later surface in production, collected from major Python frameworks. Each bug in the dataset is paired with its corresponding fault-free (fixed) version and annotated with multi-level natural language (NL) descriptions. These NL descriptions enable natural language-driven fault injection, offering a novel approach to simulating real-world faults in software systems. By bridging the gap between software fault injection techniques and real-world representativeness, PyResBugs provides researchers with a high-quality resource for advancing AI-driven automated testing in Python systems.

Large Language Models (LLMs) are increasingly deployed as the backend for a variety of real-world applications called LLM-Integrated Applications. Multiple recent works showed that LLM-Integrated Applications are vulnerable to prompt injection attacks, in which an attacker injects malicious instruction/data into the input of those applications such that they produce results as the attacker desires. However, existing works are limited to case studies. As a result, the literature lacks a systematic understanding of prompt injection attacks and their defenses. We aim to bridge the gap in this work. In particular, we propose a general framework to formalize prompt injection attacks. Existing attacks, which are discussed in research papers and blog posts, are special cases in our framework. Our framework enables us to design a new attack by combining existing attacks. Moreover, we also propose a framework to systematize defenses against prompt injection attacks. Using our frameworks, we conduct a systematic evaluation on prompt injection attacks and their defenses with 10 LLMs and 7 tasks. We hope our frameworks can inspire future research in this field. Our code is available at https://github.com/liu00222/Open-Prompt-Injection.

Multi-turn jailbreak attacks have emerged as a critical threat to Large Language Models (LLMs), bypassing safety mechanisms by progressively constructing adversarial contexts from scratch and incrementally refining prompts. However, existing methods suffer from the inefficiency of incremental context construction that requires step-by-step LLM interaction, and often stagnate in suboptimal regions due to surface-level optimization. In this paper, we characterize the Intent-Context Coupling phenomenon, revealing that LLM safety constraints are significantly relaxed when a malicious intent is coupled with a semantically congruent context pattern. Driven by this insight, we propose ICON, an automated multi-turn jailbreak framework that efficiently constructs an authoritative-style context via prior-guided semantic routing. Specifically, ICON first routes the malicious intent to a congruent context pattern (e.g., Scientific Research) and instantiates it into an attack prompt sequence. This sequence progressively builds the authoritative-style context and ultimately elicits prohibited content. In addition, ICON incorporates a Hierarchical Optimization Strategy that combines local prompt refinement with global context switching, preventing the attack from stagnating in ineffective contexts. Experimental results across eight SOTA LLMs demonstrate the effectiveness of ICON, achieving a state-of-the-art average Attack Success Rate (ASR) of 97.1\%. Code is available at https://github.com/xwlin-roy/ICON.

The Model Context Protocol (MCP) standardizes how AI agents discover and invoke external tools, with over 10,000 active servers and 97 million monthly SDK downloads as of early 2026. Yet MCP does not yet standardize how agents safely operate those tools at production scale. Three protocol-level primitives remain missing: identity propagation, adaptive tool budgeting, and structured error semantics. This paper identifies these gaps through field lessons from an enterprise deployment of an AI agent platform integrated with a major cloud provider's MCP servers (client name redacted). We propose three mechanisms to fill them: (1) the Context-Aware Broker Protocol (CABP), which extends JSON-RPC with identity-scoped request routing via a six-stage broker pipeline; (2) Adaptive Timeout Budget Allocation (ATBA), which frames sequential tool invocation as a budget allocation problem over heterogeneous latency distributions; and (3) the Structured Error Recovery Framework (SERF), which provides machine-readable failure semantics that enable deterministic agent self-correction. We organize production failure modes into five design dimensions (server contracts, user context, timeouts, errors, and observability), document concrete failure vignettes, and present a production readiness checklist. All three algorithms are formalized as testable hypotheses with reproducible experimental methodology. Field observations demonstrate that while MCP provides a solid protocol foundation, reliable agent tool integration requires infrastructure-level mechanisms that the specification does not yet address.

In-context learning, a paradigm bridging the gap between pre-training and fine-tuning, has demonstrated high efficacy in several NLP tasks, especially in few-shot settings. Despite being widely applied, in-context learning is vulnerable to malicious attacks. In this work, we raise security concerns regarding this paradigm. Our studies demonstrate that an attacker can manipulate the behavior of large language models by poisoning the demonstration context, without the need for fine-tuning the model. Specifically, we design a new backdoor attack method, named ICLAttack, to target large language models based on in-context learning. Our method encompasses two types of attacks: poisoning demonstration examples and poisoning demonstration prompts, which can make models behave in alignment with predefined intentions. ICLAttack does not require additional fine-tuning to implant a backdoor, thus preserving the model's generality. Furthermore, the poisoned examples are correctly labeled, enhancing the natural stealth of our attack method. Extensive experimental results across several language models, ranging in size from 1.3B to 180B parameters, demonstrate the effectiveness of our attack method, exemplified by a high average attack success rate of 95.0% across the three datasets on OPT models.

Large Language Models (LLMs) have seen rapid adoption in recent years, with industries increasingly relying on them to maintain a competitive advantage. These models excel at interpreting user instructions and generating human-like responses, leading to their integration across diverse domains, including consulting and information retrieval. However, their widespread deployment also introduces substantial security risks, most notably in the form of prompt injection and jailbreak attacks. To systematically evaluate LLM vulnerabilities -- particularly to external prompt injection -- we conducted a series of experiments on eight commercial models. Each model was tested without supplementary sanitization, relying solely on its built-in safeguards. The results exposed exploitable weaknesses and emphasized the need for stronger security measures. Four categories of attacks were examined: direct injection, indirect (external) injection, image-based injection, and prompt leakage. Comparative analysis indicated that Claude 3 demonstrated relatively greater robustness; nevertheless, empirical findings confirm that additional defenses, such as input normalization, remain necessary to achieve reliable protection.

Large Language Models (LLMs) are increasingly deployed in agentic systems that interact with an external environment; this makes them susceptible to prompt injections when dealing with untrusted data. To overcome this limitation, we propose SIC (Soft Instruction Control)-a simple yet effective iterative prompt sanitization loop designed for tool-augmented LLM agents. Our method repeatedly inspects incoming data for instructions that could compromise agent behavior. If such content is found, the malicious content is rewritten, masked, or removed, and the result is re-evaluated. The process continues until the input is clean or a maximum iteration limit is reached; if imperative instruction-like content remains, the agent halts to ensure security. By allowing multiple passes, our approach acknowledges that individual rewrites may fail but enables the system to catch and correct missed injections in later steps. Although immediately useful, worst-case analysis shows that SIC is not infallible; strong adversary can still get a 15% ASR by embedding non-imperative workflows. This nonetheless raises the bar.

Tool-using automation systems, from scripts and CI bots to agentic assistants, fail in recurring patterns. Common failures include unsafe side effects, invalid arguments, uncontrolled retries, and leakage of sensitive outputs. Many mitigations are model-centric and prompt-dependent, so they are brittle and do not generalize to non-LLM callers. We present Policy-First Tooling, a model-agnostic permission layer that mediates tool invocation through explicit constraints, risk-aware gating, recovery controls, and auditable explanations. The paper contributes a compact policy DSL, a runtime enforcement architecture with actionable rationale and fix hints, and a reproducible benchmark based on trace replay with controlled fault and misuse injection. In 225 controlled runs across five policy packs and three fault profiles, stricter packs improve violation prevention from 0.000 in P0 to 0.681 in P4, while task success drops from 0.356 to 0.067. Retry amplification decreases from 3.774 in P0 to 1.378 in P4, and leakage recall reaches 0.875 under injected secret outputs. These results make safety to utility trade-offs explicit and measurable.

Indirect Prompt Injection attacks exploit the inherent limitation of Large Language Models (LLMs) to distinguish between instructions and data in their inputs. Despite numerous defense proposals, the systematic evaluation against adaptive adversaries remains limited, even when successful attacks can have wide security and privacy implications, and many real-world LLM-based applications remain vulnerable. We present the results of LLMail-Inject, a public challenge simulating a realistic scenario in which participants adaptively attempted to inject malicious instructions into emails in order to trigger unauthorized tool calls in an LLM-based email assistant. The challenge spanned multiple defense strategies, LLM architectures, and retrieval configurations, resulting in a dataset of 208,095 unique attack submissions from 839 participants. We release the challenge code, the full dataset of submissions, and our analysis demonstrating how this data can provide new insights into the instruction-data separation problem. We hope this will serve as a foundation for future research towards practical structural solutions to prompt injection.

The evolution of Large Language Models (LLMs) has resulted in a paradigm shift towards autonomous agents, necessitating robust security against Prompt Injection (PI) vulnerabilities where untrusted inputs hijack agent behaviors. This SoK presents a comprehensive overview of the PI landscape, covering attacks, defenses, and their evaluation practices. Through a systematic literature review and quantitative analysis, we establish taxonomies that categorize PI attacks by payload generation strategies (heuristic vs. optimization) and defenses by intervention stages (text, model, and execution levels). Our analysis reveals a key limitation shared by many existing defenses and benchmarks: they largely overlook context-dependent tasks, in which agents are authorized to rely on runtime environmental observations to determine actions. To address this gap, we introduce AgentPI, a new benchmark designed to systematically evaluate agent behavior under context-dependent interaction settings. Using AgentPI, we empirically evaluate representative defenses and show that no single approach can simultaneously achieve high trustworthiness, high utility, and low latency. Moreover, we show that many defenses appear effective under existing benchmarks by suppressing contextual inputs, yet fail to generalize to realistic agent settings where context-dependent reasoning is essential. This SoK distills key takeaways and open research problems, offering structured guidance for future research and practical deployment of secure LLM agents.

Automating software vulnerability detection (SVD) remains a critical challenge in an era of increasingly complex and interdependent software systems. Despite significant advances in Large Language Models (LLMs) for code analysis, prevailing evaluation methodologies often lack the context-aware robustness necessary to capture real-world intricacies and cross-component interactions. To address these limitations, we present VulnSage, a comprehensive evaluation framework and a dataset curated from diverse, large-scale open-source system software projects developed in C/C++. Unlike prior datasets, it leverages a heuristic noise pre-filtering approach combined with LLM-based reasoning to ensure a representative and minimally noisy spectrum of vulnerabilities. The framework supports multi-granular analysis across function, file, and inter-function levels and employs four diverse zero-shot prompt strategies: Baseline, Chain-of-Thought, Think, and Think & Verify. Through this evaluation, we uncover that structured reasoning prompts substantially improve LLM performance, with Think & Verify reducing ambiguous responses from 20.3% to 9.1% while increasing accuracy. We further demonstrate that code-specialized models consistently outperform general-purpose alternatives, with performance varying significantly across vulnerability types, revealing that no single approach universally excels across all security contexts. Link to dataset and codes: https://github.com/Erroristotle/VulnSage.git

As Large Language Models (LLMs) are increasingly deployed in sensitive domains such as enterprise and government, ensuring that they adhere to user-defined security policies within context is critical-especially with respect to information non-disclosure. While prior LLM studies have focused on general safety and socially sensitive data, large-scale benchmarks for contextual security preservation against attacks remain lacking. To address this, we introduce a novel large-scale benchmark dataset, CoPriva, evaluating LLM adherence to contextual non-disclosure policies in question answering. Derived from realistic contexts, our dataset includes explicit policies and queries designed as direct and challenging indirect attacks seeking prohibited information. We evaluate 10 LLMs on our benchmark and reveal a significant vulnerability: many models violate user-defined policies and leak sensitive information. This failure is particularly severe against indirect attacks, highlighting a critical gap in current LLM safety alignment for sensitive applications. Our analysis reveals that while models can often identify the correct answer to a query, they struggle to incorporate policy constraints during generation. In contrast, they exhibit a partial ability to revise outputs when explicitly prompted. Our findings underscore the urgent need for more robust methods to guarantee contextual security.

Ensuring faithfulness to context in large language models (LLMs) and retrieval-augmented generation (RAG) systems is crucial for reliable deployment in real-world applications, as incorrect or unsupported information can erode user trust. Despite advancements on standard benchmarks, faithfulness hallucination-where models generate responses misaligned with the provided context-remains a significant challenge. In this work, we introduce FaithEval, a novel and comprehensive benchmark tailored to evaluate the faithfulness of LLMs in contextual scenarios across three diverse tasks: unanswerable, inconsistent, and counterfactual contexts. These tasks simulate real-world challenges where retrieval mechanisms may surface incomplete, contradictory, or fabricated information. FaithEval comprises 4.9K high-quality problems in total, validated through a rigorous four-stage context construction and validation framework, employing both LLM-based auto-evaluation and human validation. Our extensive study across a wide range of open-source and proprietary models reveals that even state-of-the-art models often struggle to remain faithful to the given context, and that larger models do not necessarily exhibit improved faithfulness.Project is available at: https://github.com/SalesforceAIResearch/FaithEval.

Large Language Model (LLM) agents are increasingly deployed in environments that generate massive, dynamic contexts. However, a critical bottleneck remains: while agents have access to this context, their static prompts lack the mechanisms to manage it effectively, leading to recurring Corrective and Enhancement failures. To address this capability gap, we introduce SCOPE (Self-evolving Context Optimization via Prompt Evolution). SCOPE frames context management as an online optimization problem, synthesizing guidelines from execution traces to automatically evolve the agent's prompt. We propose a Dual-Stream mechanism that balances tactical specificity (resolving immediate errors) with strategic generality (evolving long-term principles). Furthermore, we introduce Perspective-Driven Exploration to maximize strategy coverage, increasing the likelihood that the agent has the correct strategy for any given task. Experiments on the HLE benchmark show that SCOPE improves task success rates from 14.23\% to 38.64\% without human intervention. We make our code publicly available at https://github.com/JarvisPei/SCOPE.

Large Language Models are being increasingly deployed as the decision-making core of autonomous agents capable of effecting change in external environments. Yet, in conversational benchmarks, which simulate real-world customer-centric issue resolution scenarios, these agents frequently fail due to the cascading effects of incorrect decision-making. These challenges are particularly pronounced for open-source LLMs with smaller parameter sizes, limited context windows, and constrained inference budgets, which contribute to increased error accumulation in agentic settings. To tackle these challenges, we present the Failure-Aware Meta-Agentic (FAMA) framework. FAMA operates in two stages: first, it analyzes failure trajectories from baseline agents to identify the most prevalent errors; second, it employs an orchestration mechanism that activates a minimal subset of specialized agents tailored to address these failures by injecting a targeted context for the tool-use agent before the decision-making step. Experiments across open-source LLMs demonstrate performance gains up to 27% across evaluation modes over standard baselines. These results highlight that targeted curation of context through specialized agents to address common failures is a valuable design principle for building reliable, multi-turn tool-use LLM agents that simulate real-world conversational scenarios.

The Model Context Protocol (MCP) replaces static, developer-controlled API integrations with more dynamic, user-driven agent systems, which also introduces new security risks. As MCP adoption grows across community servers and major platforms, organizations encounter threats that existing AI governance frameworks (such as NIST AI RMF and ISO/IEC 42001) do not yet cover in detail. We focus on three types of adversaries that take advantage of MCP s flexibility: content-injection attackers that embed malicious instructions into otherwise legitimate data; supply-chain attackers who distribute compromised servers; and agents who become unintentional adversaries by over-stepping their role. Based on early incidents and proof-of-concept attacks, we describe how MCP can increase the attack surface through data-driven exfiltration, tool poisoning, and cross-system privilege escalation. In response, we propose a set of practical controls, including per-user authentication with scoped authorization, provenance tracking across agent workflows, containerized sandboxing with input/output checks, inline policy enforcement with DLP and anomaly detection, and centralized governance using private registries or gateway layers. The aim is to help organizations ensure that unvetted code does not run outside a sandbox, tools are not used beyond their intended scope, data exfiltration attempts are detectable, and actions can be audited end-to-end. We close by outlining open research questions around verifiable registries, formal methods for these dynamic systems, and privacy-preserving agent operations.

Software testing is a critical aspect of software development, yet generating test cases remains a routine task for engineers. This paper presents a benchmark, CLOVER, to evaluate models' capabilities in generating and completing test cases under specific conditions. Spanning from simple assertion completions to writing test cases that cover specific code blocks across multiple files, these tasks are based on 12 python repositories, analyzing 845 problems with context lengths ranging from 4k to 128k tokens. Utilizing code testing frameworks, we propose a method to construct retrieval contexts using coverage information. While models exhibit comparable performance with short contexts, notable differences emerge with 16k contexts. Notably, models like GPT-4o and Claude 3.5 can effectively leverage relevant snippets; however, all models score below 35\% on the complex Task III, even with the oracle context provided, underscoring the benchmark's significance and the potential for model improvement. The benchmark is containerized for code execution across tasks, and we will release the code, data, and construction methodologies.

In-Context Learning (ICL) enables Large Language Models (LLMs) to perform tasks by conditioning on input-output examples in the prompt, without requiring any update in model parameters. While widely adopted, it remains unclear whether prompting with multiple examples is the most effective and efficient way to convey task information. In this work, we propose Soft Injection of task embeddings. The task embeddings are constructed only once using few-shot ICL prompts and repeatedly used during inference. Soft injection is performed by softly mixing task embeddings with attention head activations using pre-optimized mixing parameters, referred to as soft head-selection parameters. This method not only allows a desired task to be performed without in-prompt demonstrations but also significantly outperforms existing ICL approaches while reducing memory usage and compute cost at inference time. An extensive evaluation is performed across 57 tasks and 12 LLMs, spanning four model families of sizes from 4B to 70B. Averaged across 57 tasks, our method outperforms 10-shot ICL by 10.2%-14.3% across 12 LLMs. Additional analyses show that our method also serves as an insightful tool for analyzing task-relevant roles of attention heads, revealing that task-relevant head positions selected by our method transfer across similar tasks but not across dissimilar ones -- underscoring the task-specific nature of head functionality. Our soft injection method opens a new paradigm for reducing prompt length and improving task performance by shifting task conditioning from the prompt space to the activation space.

Given the impressive capabilities of recent Large Language Models (LLMs), we investigate and benchmark the most popular proprietary and different sized open source models on the task of explicit instruction following in conflicting situations, e.g. overrides. These include the ability of the model to override the knowledge within the weights of the model, the ability to override (or moderate) extracted knowledge in the prompt, and lastly the ability to perform a full jailbreak. Experimentation performed suggest several key findings to improve instruction following - larger models perform the best in following instructions that override internal and contextual instructions, and are obedient, even to a fault. When scaling to longer contexts via rope scaling, a significant buffer needs to be maintained from the edge of the perplexity cliff in order to maintain instruction following capabilities. Finally, we observe improving instruction following, and subsequently instruction overrides/jailbreaks, is fundamentally at odds with the ability of a language model to follow given safety filters or guidelines. Thus, we postulate the most effective approach for safe, trustworthy AI should be dealt external to the LLM itself.

Large Language Models (LLMs) excel in processing and generating human language, powered by their ability to interpret and follow instructions. However, their capabilities can be exploited through prompt injection attacks. These attacks manipulate LLM-integrated applications into producing responses aligned with the attacker's injected content, deviating from the user's actual requests. The substantial risks posed by these attacks underscore the need for a thorough understanding of the threats. Yet, research in this area faces challenges due to the lack of a unified goal for such attacks and their reliance on manually crafted prompts, complicating comprehensive assessments of prompt injection robustness. We introduce a unified framework for understanding the objectives of prompt injection attacks and present an automated gradient-based method for generating highly effective and universal prompt injection data, even in the face of defensive measures. With only five training samples (0.3% relative to the test data), our attack can achieve superior performance compared with baselines. Our findings emphasize the importance of gradient-based testing, which can avoid overestimation of robustness, especially for defense mechanisms.

We report a case study of four end-to-end attempts to autonomously generate ML research papers using a pipeline of six LLM agents mapped to stages of the scientific workflow. Of these four, three attempts failed during implementation or evaluation. One completed the pipeline and was accepted to Agents4Science 2025, an experimental inaugural venue that required AI systems as first authors, passing both human and multi-AI review. From these attempts, we document six recurring failure modes: bias toward training data defaults, implementation drift under execution pressure, memory and context degradation across long-horizon tasks, overexcitement that declares success despite obvious failures, insufficient domain intelligence, and weak scientific taste in experimental design. We conclude by discussing four design principles for more robust AI-scientist systems, implications for autonomous scientific discovery, and we release all prompts, artifacts, and outputs at https://github.com/Lossfunk/ai-scientist-artefacts-v1

Autonomous language-model agents increasingly rely on installable skills and tools to complete user tasks. Static skill auditing can expose capability surface before deployment, but it cannot determine whether a particular invocation is unsafe under the current user request and runtime context. We therefore study skill invocation auditing as a continuous-risk estimation problem: given a user request, candidate skill, and runtime context, predict a score that supports ranking and triage before a hard intervention is applied. We introduce STARS, which combines a static capability prior, a request-conditioned invocation risk model, and a calibrated risk-fusion policy. To evaluate this setting, we construct SIA-Bench, a benchmark of 3,000 invocation records with group-safe splits, lineage metadata, runtime context, canonical action labels, and derived continuous-risk targets. On a held-out split of indirect prompt injection attacks, calibrated fusion reaches 0.439 high-risk AUPRC, improving over 0.405 for the contextual scorer and 0.380 for the strongest static baseline, while the contextual scorer remains better calibrated with 0.289 expected calibration error. On the locked in-distribution test split, gains are smaller and static priors remain useful. The resulting claim is therefore narrower: request-conditioned auditing is most valuable as an invocation-time risk-scoring and triage layer rather than as a replacement for static screening. Code is available at https://github.com/123zgj123/STARS.

The Model Context Protocol (MCP) has emerged as a universal standard that enables AI agents to seamlessly connect with external tools, significantly enhancing their functionality. However, while MCP brings notable benefits, it also introduces significant vulnerabilities, such as Tool Poisoning Attacks (TPA), where hidden malicious instructions exploit the sycophancy of large language models (LLMs) to manipulate agent behavior. Despite these risks, current academic research on MCP security remains limited, with most studies focusing on narrow or qualitative analyses that fail to capture the diversity of real-world threats. To address this gap, we present the MCP Attack Library (MCPLIB), which categorizes and implements 31 distinct attack methods under four key classifications: direct tool injection, indirect tool injection, malicious user attacks, and LLM inherent attack. We further conduct a quantitative analysis of the efficacy of each attack. Our experiments reveal key insights into MCP vulnerabilities, including agents' blind reliance on tool descriptions, sensitivity to file-based attacks, chain attacks exploiting shared context, and difficulty distinguishing external data from executable commands. These insights, validated through attack experiments, underscore the urgency for robust defense strategies and informed MCP design. Our contributions include 1) constructing a comprehensive MCP attack taxonomy, 2) introducing a unified attack framework MCPLIB, and 3) conducting empirical vulnerability analysis to enhance MCP security mechanisms. This work provides a foundational framework, supporting the secure evolution of MCP ecosystems.

LLM agents are increasingly deployed as executable systems that use tools, modify workspaces, and produce concrete artifacts. In such workflows, performance depends not only on the base model, but also on the harness: the system layer that manages context, tools, state, constraints, permissions, tracing, and recovery. However, existing benchmarks typically abstract away execution, compare complete agent systems, or hold the harness fixed, making execution-layer variation difficult to study. We introduce Harness-Bench, a diagnostic benchmark for evaluating configuration-level harness effects in realistic agent workflows. Harness-Bench evaluates representative harness configurations across multiple model backends under shared task environments, budgets, and evaluation protocols, while preserving each harness's native execution behavior. The benchmark contains 106 sandboxed offline tasks constructed from practical agent-use patterns and manually reviewed for realism, solvability, oracle-checkability, and integrity. Each run records final artifacts, execution traces, usage statistics, and validator outputs, enabling analysis beyond final completion. Across 5,194 execution trajectories, we observe substantial variation in completion, process quality, efficiency, and failure behavior across model-harness pairings. These results suggest that agent capability should be reported at the model-harness configuration level rather than attributed to the base model alone. Our analysis further identifies recurring execution-alignment failures, where plausible reasoning becomes decoupled from tool feedback, workspace state, evidence, or verifiable output contracts. Harness-Bench provides a reproducible foundation for diagnosing and improving reliable, efficient, and auditable agent execution stacks.

Solving complex or long-horizon problems often requires large language models (LLMs) to use external tools and operate over a significantly longer context window. New LLMs enable longer context windows and support tool calling capabilities. Prior works have focused mainly on evaluation of LLMs on long-context prompts, leaving agentic setup relatively unexplored, both from capability and safety perspectives. Our work addresses this gap. We find that LLM agents could be sensitive to length, type, and placement of the context, exhibiting unexpected and inconsistent shifts in task performance and in refusals to execute harmful requests. Models with 1M-2M token context windows show severe degradation already at 100K tokens, with performance drops exceeding 50\% for both benign and harmful tasks. Refusal rates shift unpredictably: GPT-4.1-nano increases from sim5\% to sim40\% while Grok 4 Fast decreases from sim80\% to sim10\% at 200K tokens. Our work shows potential safety issues with agents operating on longer context and opens additional questions on the current metrics and paradigm for evaluating LLM agent safety on long multi-step tasks. In particular, our results on LLM agents reveal a notable divergence in both capability and safety performance compared to prior evaluations of LLMs on similar criteria.

In-context Learning (ICL) empowers large language models (LLMs) to adapt to unseen tasks during inference by prefixing a few demonstration examples prior to test queries. Despite its versatility, ICL incurs substantial computational and memory overheads compared to zero-shot learning and is susceptible to the selection and order of demonstration examples. In this work, we introduce Implicit In-context Learning (I2CL), an innovative paradigm that addresses the challenges associated with traditional ICL by absorbing demonstration examples within the activation space. I2CL first generates a condensed vector representation, namely a context vector, from the demonstration examples. It then integrates the context vector during inference by injecting a linear combination of the context vector and query activations into the model's residual streams. Empirical evaluation on nine real-world tasks across three model architectures demonstrates that I2CL achieves few-shot performance with zero-shot cost and exhibits robustness against the variation of demonstration examples. Furthermore, I2CL facilitates a novel representation of "task-ids", enhancing task similarity detection and enabling effective transfer learning. We provide a comprehensive analysis of I2CL, offering deeper insights into its mechanisms and broader implications for ICL. The source code is available at: https://github.com/LzVv123456/I2CL.

Prompt injection attacks pose serious security risks across a wide range of real-world applications. While receiving increasing attention, the community faces a critical gap: the lack of a unified platform for prompt injection evaluation. This makes it challenging to reliably compare defenses, understand their true robustness under diverse attacks, or assess how well they generalize across tasks and benchmarks. For instance, many defenses initially reported as effective were later found to exhibit limited robustness on diverse datasets and attacks. To bridge this gap, we introduce PIArena, a unified and extensible platform for prompt injection evaluation that enables users to easily integrate state-of-the-art attacks and defenses and evaluate them across a variety of existing and new benchmarks. We also design a dynamic strategy-based attack that adaptively optimizes injected prompts based on defense feedback. Through comprehensive evaluation using PIArena, we uncover critical limitations of state-of-the-art defenses: limited generalizability across tasks, vulnerability to adaptive attacks, and fundamental challenges when an injected task aligns with the target task. The code and datasets are available at https://github.com/sleeepeer/PIArena.

Large Language Models (LLMs) have emerged as powerful operators for evolutionary search, yet the design of efficient search scaffolds remains ad hoc. While promising, current LLM-in-the-loop systems lack a systematic approach to managing the evolutionary process. We identify three distinct failure modes: Context Pollution, where experiment history biases future candidate generation; Mode Collapse, where agents stagnate in local minima due to poor exploration-exploitation balance; and Weak Collaboration, where rigid crossover strategies fail to leverage parallel search trajectories effectively. We introduce Progress-Aware Consistent Evolution (PACEvolve), a framework designed to robustly govern the agent's context and search dynamics, to address these challenges. PACEvolve combines hierarchical context management (HCM) with pruning to address context pollution; momentum-based backtracking (MBB) to escape local minima; and a self-adaptive sampling policy that unifies backtracking and crossover for dynamic search coordination (CE), allowing agents to balance internal refinement with cross-trajectory collaboration. We demonstrate that PACEvolve provides a systematic path to consistent, long-horizon self-improvement, achieving state-of-the-art results on LLM-SR and KernelBench, while discovering solutions surpassing the record on Modded NanoGPT.

Agentic systems built on large language models (LLMs) extend beyond text generation to autonomously retrieve information and invoke tools. This runtime execution model shifts the attack surface from build-time artifacts to inference-time dependencies, exposing agents to manipulation through untrusted data and probabilistic capability resolution. While prior work has focused on model-level vulnerabilities, security risks emerging from cyclic and interdependent runtime behavior remain fragmented. We systematize these risks within a unified runtime framework, categorizing threats into data supply chain attacks (transient context injection and persistent memory poisoning) and tool supply chain attacks (discovery, implementation, and invocation). We further identify the Viral Agent Loop, in which agents act as vectors for self-propagating generative worms without exploiting code-level flaws. Finally, we advocate a Zero-Trust Runtime Architecture that treats context as untrusted control flow and constrains tool execution through cryptographic provenance rather than semantic inference.

Despite recent advancements in Large Language Models (LLMs), their performance on tasks involving long contexts remains sub-optimal. In-Context Learning (ICL) with few-shot examples may be an appealing solution to enhance LLM performance in this scenario; However, naively adding ICL examples with long context introduces challenges, including substantial token overhead added for each few-shot example and context mismatch between the demonstrations and the target query. In this work, we propose to automatically generate few-shot examples for long context QA tasks by recycling contexts. Specifically, given a long input context (1-3k tokens) and a query, we generate additional query-output pairs from the given context as few-shot examples, while introducing the context only once. This ensures that the demonstrations are leveraging the same context as the target query while only adding a small number of tokens to the prompt. We further enhance each demonstration by instructing the model to explicitly identify the relevant paragraphs before the answer, which improves performance while providing fine-grained attribution to the answer source. We apply our method on multiple LLMs and obtain substantial improvements (+23\% on average across models) on various QA datasets with long context, especially when the answer lies within the middle of the context. Surprisingly, despite introducing only single-hop ICL examples, LLMs also successfully generalize to multi-hop long-context QA using our approach.

Spec-driven development (SDD) with AI coding agents provides a structured workflow, but agents often remain "context blind" in large, evolving repositories, leading to hallucinated APIs and architectural violations. We present Spec Kit Agents, a multi-agent SDD pipeline (with PM and developer roles) that adds phase-level, context-grounding hooks. Read-only probing hooks ground each stage (Specify, Plan, Tasks, Implement) in repository evidence, while validation hooks check intermediate artifacts against the environment. We evaluate 128 runs covering 32 features across five repositories. Context-grounding hooks improve judged quality by +0.15 on a 1-5 composite LLM-as-judge score (+3.0 percent of the full score; Wilcoxon signed-rank, p < 0.05) while maintaining 99.7-100 percent repository-level test compatibility. We further evaluate the framework on SWE-bench Lite, where augmentation hooks improve baseline by 1.7 percent, achieving 58.2 percent Pass@1.

The operational efficacy of large language models relies heavily on their inference-time context. This has established Context Engineering (CE) as a formal discipline for optimizing these inputs. Current CE methods rely on manually crafted harnesses, such as rigid generation-reflection workflows and predefined context schemas. They impose structural biases and restrict context optimization to a narrow, intuition-bound design space. To address this, we introduce Meta Context Engineering (MCE), a bi-level framework that supersedes static CE heuristics by co-evolving CE skills and context artifacts. In MCE iterations, a meta-level agent refines engineering skills via agentic crossover, a deliberative search over the history of skills, their executions, and evaluations. A base-level agent executes these skills, learns from training rollouts, and optimizes context as flexible files and code. We evaluate MCE across five disparate domains under offline and online settings. MCE demonstrates consistent performance gains, achieving 5.6--53.8% relative improvement over state-of-the-art agentic CE methods (mean of 16.9%), while maintaining superior context adaptability, transferability, and efficiency in both context usage and training.

Software updates, including bug repair and feature additions, are frequent in modern applications but they often leave test suites outdated, resulting in undetected bugs and increased chances of system failures. A recent study by Meta revealed that 14%-22% of software failures stem from outdated tests that fail to reflect changes in the codebase. This highlights the need to keep tests in sync with code changes to ensure software reliability. In this paper, we present UTFix, a novel approach for repairing unit tests when their corresponding focal methods undergo changes. UTFix addresses two critical issues: assertion failure and reduced code coverage caused by changes in the focal method. Our approach leverages language models to repair unit tests by providing contextual information such as static code slices, dynamic code slices, and failure messages. We evaluate UTFix on our generated synthetic benchmarks (Tool-Bench), and real-world benchmarks. Tool- Bench includes diverse changes from popular open-source Python GitHub projects, where UTFix successfully repaired 89.2% of assertion failures and achieved 100% code coverage for 96 tests out of 369 tests. On the real-world benchmarks, UTFix repairs 60% of assertion failures while achieving 100% code coverage for 19 out of 30 unit tests. To the best of our knowledge, this is the first comprehensive study focused on unit test in evolving Python projects. Our contributions include the development of UTFix, the creation of Tool-Bench and real-world benchmarks, and the demonstration of the effectiveness of LLM-based methods in addressing unit test failures due to software evolution.

Current application designers have moved to integrate large language models (LLMs) into their products. These LLM-integrated applications are vulnerable to prompt injection vulnerabilities. While attempts have been made to address this problem by building a detector that can monitor inputs to the LLM and detect attacks, we find that many detectors are not yet suitable for practical deployment. To support research in this area, we design the PromptShield benchmark for evaluating practical prompt injection detectors. We also construct a new detector, the PromptShield detector, which achieves significantly better performance at detecting prompt injection attacks than any prior scheme. Our work suggests that larger models, more training data, appropriate metrics, and careful curation of training data can contribute to strong detector performance.

Medical knowledge is context-dependent and requires consistent reasoning across various natural language expressions of semantically equivalent phrases. This is particularly crucial for drug names, where patients often use brand names like Advil or Tylenol instead of their generic equivalents. To study this, we create a new robustness dataset, RABBITS, to evaluate performance differences on medical benchmarks after swapping brand and generic drug names using physician expert annotations. We assess both open-source and API-based LLMs on MedQA and MedMCQA, revealing a consistent performance drop ranging from 1-10\%. Furthermore, we identify a potential source of this fragility as the contamination of test data in widely used pre-training datasets. All code is accessible at https://github.com/BittermanLab/RABBITS, and a HuggingFace leaderboard is available at https://huggingface.co/spaces/AIM-Harvard/rabbits-leaderboard.

Prompt injection remains a central obstacle to the safe deployment of large language models, particularly in multi-agent settings where intermediate outputs can propagate or amplify malicious instructions. Building on earlier work that introduced a four-metric Total Injection Vulnerability Score (TIVS), this paper extends the evaluation framework with semantic similarity-based caching and a fifth metric (Observability Score Ratio) to yield TIVS-O, investigating how defence effectiveness interacts with transparency in a HOPE-inspired Nested Learning architecture. The proposed system combines an agentic pipeline with Continuum Memory Systems that implement semantic similarity-based caching across 301 synthetically generated injection-focused prompts drawn from ten attack families, while a fourth agent performs comprehensive security analysis using five key performance indicators. In addition to traditional injection metrics, OSR quantifies the richness and clarity of security-relevant reasoning exposed by each agent, enabling an explicit analysis of trade-offs between strict mitigation and auditability. Experiments show that the system achieves secure responses with zero high-risk breaches, while semantic caching delivers substantial computational savings, achieving a 41.6% reduction in LLM calls and corresponding decreases in latency, energy consumption, and carbon emissions. Five TIVS-O configurations reveal optimal trade-offs between mitigation strictness and forensic transparency. These results indicate that observability-aware evaluation can reveal non-monotonic effects within multi-agent pipelines and that memory-augmented agents can jointly maximize security robustness, real-time performance, operational cost savings, and environmental sustainability without modifying underlying model weights, providing a production-ready pathway for secure and green LLM deployments.

Long-context large language models (LLMs), such as Gemini-2.5-Pro and Claude-Sonnet-4, are increasingly used to empower advanced AI systems, including retrieval-augmented generation (RAG) pipelines and autonomous agents. In these systems, an LLM receives an instruction along with a context--often consisting of texts retrieved from a knowledge database or memory--and generates a response that is contextually grounded by following the instruction. Recent studies have designed solutions to trace back to a subset of texts in the context that contributes most to the response generated by the LLM. These solutions have numerous real-world applications, including performing post-attack forensic analysis and improving the interpretability and trustworthiness of LLM outputs. While significant efforts have been made, state-of-the-art solutions such as TracLLM often lead to a high computation cost, e.g., it takes TracLLM hundreds of seconds to perform traceback for a single response-context pair. In this work, we propose AttnTrace, a new context traceback method based on the attention weights produced by an LLM for a prompt. To effectively utilize attention weights, we introduce two techniques designed to enhance the effectiveness of AttnTrace, and we provide theoretical insights for our design choice. We also perform a systematic evaluation for AttnTrace. The results demonstrate that AttnTrace is more accurate and efficient than existing state-of-the-art context traceback methods. We also show that AttnTrace can improve state-of-the-art methods in detecting prompt injection under long contexts through the attribution-before-detection paradigm. As a real-world application, we demonstrate that AttnTrace can effectively pinpoint injected instructions in a paper designed to manipulate LLM-generated reviews. The code is at https://github.com/Wang-Yanting/AttnTrace.

Multimodal large language models (MLLMs) are increasingly deployed as assistants that interact through text and images, making it crucial to evaluate contextual safety when risk depends on both the visual scene and the evolving dialogue. Existing contextual safety benchmarks are mostly single-turn and often miss how malicious intent can emerge gradually or how the same scene can support both benign and exploitative goals. We introduce the Multi-Turn Multimodal Contextual Safety Benchmark (MTMCS-Bench), a benchmark of realistic images and multi-turn conversations that evaluates contextual safety in MLLMs under two complementary settings, escalation-based risk and context-switch risk. MTMCS-Bench offers paired safe and unsafe dialogues with structured evaluation. It contains over 30 thousand multimodal (image+text) and unimodal (text-only) samples, with metrics that separately measure contextual intent recognition, safety-awareness on unsafe cases, and helpfulness on benign ones. Across eight open-source and seven proprietary MLLMs, we observe persistent trade-offs between contextual safety and utility, with models tending to either miss gradual risks or over-refuse benign dialogues. Finally, we evaluate five current guardrails and find that they mitigate some failures but do not fully resolve multi-turn contextual risks.

Recent advancements in large language models (LLM) capable of processing extremely long texts highlight the need for a dedicated evaluation benchmark to assess their long-context capabilities. However, existing methods, like the needle-in-a-haystack test, do not effectively assess whether these models fully utilize contextual information, raising concerns about the reliability of current evaluation techniques. To thoroughly examine the effectiveness of existing benchmarks, we introduce a new metric called information coverage (IC), which quantifies the proportion of the input context necessary for answering queries. Our findings indicate that current benchmarks exhibit low IC; although the input context may be extensive, the actual usable context is often limited. To address this, we present ETHIC, a novel benchmark designed to assess LLMs' ability to leverage the entire context. Our benchmark comprises 2,648 test instances spanning four long-context tasks with high IC scores in the domains of books, debates, medicine, and law. Our evaluations reveal significant performance drops in contemporary LLMs, highlighting a critical challenge in managing long contexts. Our benchmark is available at https://github.com/dmis-lab/ETHIC.

Retrieval-augmented generation (RAG) enhances the capabilities of large language models (LLMs) by incorporating external knowledge into their input prompts. However, when the retrieved context contradicts the LLM's parametric knowledge, it often fails to resolve the conflict between incorrect external context and correct parametric knowledge, known as context-memory conflict. To tackle this problem, we introduce Conflict-Aware REtrieval-Augmented Generation (CARE), consisting of a context assessor and a base LLM. The context assessor encodes compact memory token embeddings from raw context tokens. Through grounded/adversarial soft prompting, the context assessor is trained to discern unreliable context and capture a guidance signal that directs reasoning toward the more reliable knowledge source. Extensive experiments show that CARE effectively mitigates context-memory conflicts, leading to an average performance gain of 5.0\% on QA and fact-checking benchmarks, establishing a promising direction for trustworthy and adaptive RAG systems.

Indirect prompt injection threatens LLM agents by embedding malicious instructions in external content, enabling unauthorized actions and data theft. LLM agents maintain working memory through their context window, which stores interaction history for decision-making. Conventional agents indiscriminately accumulate all tool outputs and reasoning traces in this memory, creating two critical vulnerabilities: (1) injected instructions persist throughout the workflow, granting attackers multiple opportunities to manipulate behavior, and (2) verbose, non-essential content degrades decision-making capabilities. Existing defenses treat bloated memory as given and focus on remaining resilient, rather than reducing unnecessary accumulation to prevent the attack. We present AgentSys, a framework that defends against indirect prompt injection through explicit memory management. Inspired by process memory isolation in operating systems, AgentSys organizes agents hierarchically: a main agent spawns worker agents for tool calls, each running in an isolated context and able to spawn nested workers for subtasks. External data and subtask traces never enter the main agent's memory; only schema-validated return values can cross boundaries through deterministic JSON parsing. Ablations show isolation alone cuts attack success to 2.19%, and adding a validator/sanitizer further improves defense with event-triggered checks whose overhead scales with operations rather than context length. On AgentDojo and ASB, AgentSys achieves 0.78% and 4.25% attack success while slightly improving benign utility over undefended baselines. It remains robust to adaptive attackers and across multiple foundation models, showing that explicit memory management enables secure, dynamic LLM agent architectures. Our code is available at: https://github.com/ruoyaow/agentsys-memory.

AI coding assistants are widely used for tasks like code generation. These tools now require large and complex contexts, automatically sourced from various originsx2014across files, projects, and contributorsx2014forming part of the prompt fed to underlying LLMs. This automatic context-gathering introduces new vulnerabilities, allowing attackers to subtly poison input to compromise the assistant's outputs, potentially generating vulnerable code or introducing critical errors. We propose a novel attack, Cross-Origin Context Poisoning (XOXO), that is challenging to detect as it relies on adversarial code modifications that are semantically equivalent. Traditional program analysis techniques struggle to identify these perturbations since the semantics of the code remains correct, making it appear legitimate. This allows attackers to manipulate coding assistants into producing incorrect outputs, while shifting the blame to the victim developer. We introduce a novel, task-agnostic, black-box attack algorithm GCGS that systematically searches the transformation space using a Cayley Graph, achieving a 75.72% attack success rate on average across five tasks and eleven models, including GPT 4.1 and Claude 3.5 Sonnet v2 used by popular AI coding assistants. Furthermore, defenses like adversarial fine-tuning are ineffective against our attack, underscoring the need for new security measures in LLM-powered coding tools.

Prompt injection attacks pose a critical threat to large language models (LLMs), enabling goal hijacking and data leakage. Prompt guard models, though effective in defense, suffer from over-defense -- falsely flagging benign inputs as malicious due to trigger word bias. To address this issue, we introduce NotInject, an evaluation dataset that systematically measures over-defense across various prompt guard models. NotInject contains 339 benign samples enriched with trigger words common in prompt injection attacks, enabling fine-grained evaluation. Our results show that state-of-the-art models suffer from over-defense issues, with accuracy dropping close to random guessing levels (60%). To mitigate this, we propose InjecGuard, a novel prompt guard model that incorporates a new training strategy, Mitigating Over-defense for Free (MOF), which significantly reduces the bias on trigger words. InjecGuard demonstrates state-of-the-art performance on diverse benchmarks including NotInject, surpassing the existing best model by 30.8%, offering a robust and open-source solution for detecting prompt injection attacks. The code and datasets are released at https://github.com/SaFoLab-WISC/InjecGuard.

Code review is a cornerstone of software quality assurance, and recent advances in Large Language Models (LLMs) have shown promise in its automation. However, existing benchmarks for LLM-based code review face three major limitations. Lack of semantic context: most benchmarks provide only code diffs without textual information such as issue descriptions, which are crucial for understanding developer intent. Data quality issues: without rigorous validation, many samples are noisy-e.g., reviews on outdated or irrelevant code-reducing evaluation reliability. Coarse granularity: most benchmarks operate at the file or commit level, overlooking the fine-grained, line-level reasoning essential for precise review. We introduce ContextCRBench, a high-quality, context-rich benchmark for fine-grained LLM evaluation in code review. Our construction pipeline comprises: Raw Data Crawling, collecting 153.7K issues and pull requests from top-tier repositories; Comprehensive Context Extraction, linking issue-PR pairs for textual context and extracting the full surrounding function or class for code context; and Multi-stage Data Filtering, combining rule-based and LLM-based validation to remove outdated, malformed, or low-value samples, resulting in 67,910 context-enriched entries. ContextCRBench supports three evaluation scenarios aligned with the review workflow: hunk-level quality assessment, line-level defect localization, and line-level comment generation. Evaluating eight leading LLMs (four closed-source and four open-source) reveals that textual context yields greater performance gains than code context alone, while current LLMs remain far from human-level review ability. Deployed at ByteDance, ContextCRBench drives a self-evolving code review system, improving performance by 61.98% and demonstrating its robustness and industrial utility. https://github.com/kinesiatricssxilm14/ContextCRBench.

The widespread reliance on open-source software dramatically increases the risk of vulnerability exploitation, underscoring the need for effective and scalable vulnerability detection (VD). Existing VD techniques, whether traditional machine learning-based or LLM-based approaches like prompt engineering, supervised fine-tuning, or off-policy preference optimization, remain fundamentally limited in their ability to perform context-aware analysis: They depend on fixed inputs or static preference datasets, cannot adaptively explore repository-level dependencies, and are constrained by function-level benchmarks that overlook critical vulnerability context. This paper introduces Vulnerability-Adaptive Policy Optimization (VULPO), an on-policy LLM reinforcement learning framework for context-aware VD. To support training and evaluation, we first construct ContextVul, a new dataset that augments high-quality function-level samples with lightweight method to extract repository-level context information. We then design multi-dimensional reward structuring that jointly captures prediction correctness, vulnerability localization accuracy, and the semantic relevance of vulnerability analysis, thereby guiding the model toward comprehensive contextual reasoning. To address the asymmetric difficulty of different vulnerability cases and mitigate reward hacking, VULPO incorporates label-level and sample-level difficulty-adaptive reward scaling, encouraging the model to explore challenging cases while maintaining balanced reward distribution. Extensive experiments demonstrate the superiority of our VULPO framework in context-aware VD: Our VULPO-4B substantially outperforms existing VD baselines based on prompt engineering and off-policy optimization, improving F1 by 85% over Qwen3-4B and achieving performance comparable to a 150x larger-scale model, DeepSeek-R1-0528.

In-context learning (ICL) is a powerful paradigm emerged from large language models (LLMs). Despite its promises, ICL performance is known to be highly sensitive to input examples. In this work, we use in-context influences to analyze few-shot ICL performance directly from the in-context examples. Our proposed influence-based example selection method can identify both positive and negative examples, outperforming several baselines when evaluated on 9 SuperGLUE tasks. Our analysis uncovers up to a 16.3% performance gap between using the most negative in-context examples compared to the most positive. In a case study, we apply our influence-based framework to quantify the phenomena of recency bias in example ordering for few-shot ICL.

A multi-agent pipeline with N agents typically issues N LLM calls per run. Merging agents into fewer calls (compound execution) promises token savings, but naively merged calls silently degrade quality through tool loss and prompt compression. We present Agent Capsules, an adaptive execution runtime that treats multi-agent pipeline execution as an optimization problem with empirical quality constraints. The runtime instruments coordination overhead per group, scores composition opportunity, selects among three compound execution strategies, and gates every mode switch on rolling-mean output quality. A controlled negative result confirms that injecting more context into a merged call worsens compression rather than relieving it, so the framework's escalation ladder (standard, then two-phase, then sequential) recovers quality by moving toward per-agent dispatch rather than by rewriting merged prompts. On LLM-judged quality, the controller matches a hand-tuned oracle on every measured (model, group, mode) cell: routing compound whenever the oracle would, and reverting to fine whenever quality would fail the floor, without per-model configuration. Against a hand-crafted LangGraph implementation of a 14-agent competitive intelligence pipeline, Agent Capsules uses 51% fewer fine-mode input tokens and 42% fewer compound-mode input tokens, at +0.020 and +0.017 quality respectively. Against a DSPy implementation of a 5-agent due diligence pipeline, the framework uses 19% fewer tokens than uncompiled DSPy at quality parity, and 68% fewer tokens than MIPROv2 at +0.052 quality. Even before compound mode fires, the runtime delivers efficiency through automatic policy resolution, cache-aligned prompts, and topology-aware context injection, matching both hand-tuned and compile-time baselines without training data or per-pipeline engineering.

Pre-trained Large Language Models (LLMs) require post-training methods such as supervised fine-tuning (SFT) on instruction-response pairs to enable instruction following. However, this process can potentially harm existing capabilities learned during pre-training. In this paper, we investigate the loss of context awareness after SFT, where context awareness is defined as the ability to extract and understand information from user-provided context and respond accordingly. We identify and demonstrate that the loss of context awareness, particularly in open-source models, occurs in instruction fine-tuned LLMs when the chat template is applied to input prompts. We identify that the performance decline is associated with a bias toward different roles learned during conversational instruction fine-tuning. We demonstrate this correlation by visualizing changes in attention allocation after the chat template is applied and manually steering the attention heads. The bias can be learned from training examples that align with the model's internal knowledge and rely less on the user-provided context to generate correct responses. Based on these observations, we propose a metric to identify context-dependent examples from general instruction fine-tuning datasets. We then apply conditional instruction fine-tuning with a context-dependency indicator, enabling the model to preserve context awareness after SFT. Empirical experiments on four context-dependent downstream tasks and three pre-trained LLMs of different sizes show that our method effectively mitigates the loss of context awareness without compromising general instruction-following capabilities.

The Model Context Protocol (MCP) standardizes how large language model (LLM) agents discover, describe, and call external tools. While MCP unlocks broad interoperability, it also enlarges the attack surface by making tools first-class, composable objects with natural-language metadata, and standardized I/O. We present MSB (MCP Security Benchmark), the first end-to-end evaluation suite that systematically measures how well LLM agents resist MCP-specific attacks throughout the full tool-use pipeline: task planning, tool invocation, and response handling. MSB contributes: (1) a taxonomy of 12 attacks including name-collision, preference manipulation, prompt injections embedded in tool descriptions, out-of-scope parameter requests, user-impersonating responses, false-error escalation, tool-transfer, retrieval injection, and mixed attacks; (2) an evaluation harness that executes attacks by running real tools (both benign and malicious) via MCP rather than simulation; and (3) a robustness metric that quantifies the trade-off between security and performance: Net Resilient Performance (NRP). We evaluate nine popular LLM agents across 10 domains and 405 tools, producing 2,000 attack instances. Results reveal the effectiveness of attacks against each stage of MCP. Models with stronger performance are more vulnerable to attacks due to their outstanding tool calling and instruction following capabilities. MSB provides a practical baseline for researchers and practitioners to study, compare, and harden MCP agents. Code: https://github.com/dongsenzhang/MSB

Large Language Models (LLMs) have shown remarkable success in various tasks, but concerns about their safety and the potential for generating malicious content have emerged. In this paper, we explore the power of In-Context Learning (ICL) in manipulating the alignment ability of LLMs. We find that by providing just few in-context demonstrations without fine-tuning, LLMs can be manipulated to increase or decrease the probability of jailbreaking, i.e. answering malicious prompts. Based on these observations, we propose In-Context Attack (ICA) and In-Context Defense (ICD) methods for jailbreaking and guarding aligned language model purposes. ICA crafts malicious contexts to guide models in generating harmful outputs, while ICD enhances model robustness by demonstrations of rejecting to answer harmful prompts. Our experiments show the effectiveness of ICA and ICD in increasing or reducing the success rate of adversarial jailbreaking attacks. Overall, we shed light on the potential of ICL to influence LLM behavior and provide a new perspective for enhancing the safety and alignment of LLMs.

Large Language Models (LLMs) have shown promise in automating code generation and software engineering tasks, yet they often struggle with complex, multi-file projects due to context limitations and knowledge gaps. We propose a novel context engineering workflow that combines multiple AI components: an Intent Translator (GPT-5) for clarifying user requirements, an Elicit-powered semantic literature retrieval for injecting domain knowledge, NotebookLM-based document synthesis for contextual understanding, and a Claude Code multi-agent system for code generation and validation. Our integrated approach leverages intent clarification, retrieval-augmented generation, and specialized sub-agents orchestrated via Claude's agent framework. We demonstrate that this method significantly improves the accuracy and reliability of code assistants in real-world repositories, yielding higher single-shot success rates and better adherence to project context than baseline single-agent approaches. Qualitative results on a large Next.js codebase show the multi-agent system effectively plans, edits, and tests complex features with minimal human intervention. We compare our system with recent frameworks like CodePlan, MASAI, and HyperAgent, highlighting how targeted context injection and agent role decomposition lead to state-of-the-art performance. Finally, we discuss the implications for deploying LLM-based coding assistants in production, along with lessons learned on context management and future research directions.

The Model Context Protocol (MCP) is an emerging standard designed to enable seamless interaction between Large Language Model (LLM) applications and external tools or resources. Within a short period, thousands of MCP services have already been developed and deployed. However, the client-server integration architecture inherent in MCP may expand the attack surface against LLM Agent systems, introducing new vulnerabilities that allow attackers to exploit by designing malicious MCP servers. In this paper, we present the first systematic study of attack vectors targeting the MCP ecosystem. Our analysis identifies four categories of attacks, i.e., Tool Poisoning Attacks, Puppet Attacks, Rug Pull Attacks, and Exploitation via Malicious External Resources. To evaluate the feasibility of these attacks, we conduct experiments following the typical steps of launching an attack through malicious MCP servers: upload-download-attack. Specifically, we first construct malicious MCP servers and successfully upload them to three widely used MCP aggregation platforms. The results indicate that current audit mechanisms are insufficient to identify and prevent the proposed attack methods. Next, through a user study and interview with 20 participants, we demonstrate that users struggle to identify malicious MCP servers and often unknowingly install them from aggregator platforms. Finally, we demonstrate that these attacks can trigger harmful behaviors within the user's local environment-such as accessing private files or controlling devices to transfer digital assets-by deploying a proof-of-concept (PoC) framework against five leading LLMs. Additionally, based on interview results, we discuss four key challenges faced by the current security ecosystem surrounding MCP servers. These findings underscore the urgent need for robust security mechanisms to defend against malicious MCP servers.

Context faithfulness is essential for reliable reasoning in context-dependent scenarios. However, large language models often struggle to ground their outputs in the provided context, resulting in irrelevant responses. Inspired by the emergent expert specialization observed in mixture-of-experts architectures, this work investigates whether certain experts exhibit specialization in context utilization, offering a potential pathway toward targeted optimization for improved context faithfulness. To explore this, we propose Router Lens, a method that accurately identifies context-faithful experts. Our analysis reveals that these experts progressively amplify attention to relevant contextual information, thereby enhancing context grounding. Building on this insight, we introduce Context-faithful Expert Fine-Tuning (CEFT), a lightweight optimization approach that selectively fine-tunes context-faithful experts. Experiments across a wide range of benchmarks and models demonstrate that CEFT matches or surpasses the performance of full fine-tuning while being significantly more efficient.

LongRoPE2 is a novel approach that extends the effective context window of pre-trained large language models (LLMs) to the target length, while preserving the performance on the original shorter context window. This is achieved by three contributions: (1) a hypothesis that insufficient training in higher RoPE dimensions contributes to the persistent out-of-distribution (OOD) issues observed in existing methods; (2) an effective RoPE rescaling algorithm that adopts evolutionary search guided by "needle-driven" perplexity to address the insufficient training problem; (3) a mixed context window training approach that fine-tunes model weights to adopt rescaled RoPE for long-context sequences while preserving the short-context performance with the original RoPE. Extensive experiments on LLaMA3-8B and Phi3-mini-3.8B across various benchmarks validate the hypothesis and demonstrate the effectiveness of LongRoPE2. Remarkably, LongRoPE2 extends LLaMA3-8B to achieve a 128K effective context length while retaining over 98.5% of short-context performance, using only 10B tokens -- 80x fewer than Meta's approach, which fails to reach the target effective context length. Code will be available at https://github.com/microsoft/LongRoPE.

Large Language Models (LLMs) have shown promise in software engineering tasks, but evaluating their effectiveness in vulnerability detection is challenging due to the lack of high-quality datasets. Most existing datasets are limited to function-level labels, ignoring finer-grained vulnerability patterns and crucial contextual information. Also, poor data quality such as mislabeling, inconsistent annotations, and duplicates can lead to inflated performance and weak generalization. Moreover, by including only the functions, these datasets miss broader program context, like data/control dependencies and interprocedural interactions, that are essential for accurately understanding real-world security flaws. Without this context, detection models are evaluated under unrealistic assumptions. To address these limitations, this paper introduces SecVulEval, a benchmark designed to support fine-grained evaluation of LLMs and other detection methods with rich contextual information. SecVulEval focuses on real-world C/C++ vulnerabilities at the statement level. This granularity enables more precise evaluation of a model's ability to localize vulnerabilities, beyond simple binary classification at the function level. By incorporating rich contextual information, SecVulEval sets a new standard for vulnerability detection benchmarks in realistic scenarios. This benchmark includes 25,440 function samples covering 5,867 unique CVEs in C/C++ projects from 1999 to 2024. We evaluated the SOTA LLMs with a multi-agent-based approach. The evaluation on our dataset shows that the models are still far from accurately predicting vulnerable statements in a given function. The best-performing Claude-3.7-Sonnet model achieves 23.83% F1-score for detecting vulnerable statements with correct reasoning. Finally, we analyze the LLM outputs and provide insights into their behavior in vulnerability detection for C/C++.

Accurate confidence estimation is essential for trustworthy large language models (LLMs) systems, as it empowers the user to determine when to trust outputs and enables reliable deployment in safety-critical applications. Current confidence estimation methods for LLMs neglect the relevance between responses and contextual information, a crucial factor in output quality evaluation, particularly in scenarios where background knowledge is provided. To bridge this gap, we propose CRUX (Context-aware entropy Reduction and Unified consistency eXamination), the first framework that integrates context faithfulness and consistency for confidence estimation via two novel metrics. First, contextual entropy reduction represents data uncertainty with the information gain through contrastive sampling with and without context. Second, unified consistency examination captures potential model uncertainty through the global consistency of the generated answers with and without context. Experiments across three benchmark datasets (CoQA, SQuAD, QuAC) and two domain-specific datasets (BioASQ, EduQG) demonstrate CRUX's effectiveness, achieving the highest AUROC than existing baselines.

Majority voting over multiple LLM attempts improves mathematical reasoning, but correlated errors limit the effective sample size. A natural fix is to assign different reasoning strategies to different voters. The approach, Diverse Prompt Mixer, is tested on the AIMO 3 competition: 3 models, 23+ experiments, 50 IMO-level problems, one H100 80 GB, 5-hour limit. Every prompt-level intervention fails. High-temperature sampling already decorrelates errors; weaker strategies reduce accuracy more than they reduce correlation. Across an 8-point capability gap at equal N=8 and every optimization tested, model capability dominates. The gap between the best majority-vote score (42/50) and pass@20 (~45.5) is selection loss, not prompt loss. A verifier-based selector could close it. Prompt engineering cannot.

Prompt injection attacks manipulate webpage content to cause web agents to execute attacker-specified tasks instead of the user's intended ones. Existing methods for detecting and localizing such attacks achieve limited effectiveness, as their underlying assumptions often do not hold in the web-agent setting. In this work, we propose WebSentinel, a two-step approach for detecting and localizing prompt injection attacks in webpages. Given a webpage, Step I extracts segments of interest that may be contaminated, and Step II evaluates each segment by checking its consistency with the webpage content as context. We show that WebSentinel is highly effective, substantially outperforming baseline methods across multiple datasets of both contaminated and clean webpages that we collected. Our code is available at: https://github.com/wxl-lxw/WebSentinel.

The strong planning and reasoning capabilities of Large Language Models (LLMs) have fostered the development of agent-based systems capable of leveraging external tools and interacting with increasingly complex environments. However, these powerful features also introduce a critical security risk: indirect prompt injection, a sophisticated attack vector that compromises the core of these agents, the LLM, by manipulating contextual information rather than direct user prompts. In this work, we propose a generic black-box fuzzing framework, AgentVigil, designed to automatically discover and exploit indirect prompt injection vulnerabilities across diverse LLM agents. Our approach starts by constructing a high-quality initial seed corpus, then employs a seed selection algorithm based on Monte Carlo Tree Search (MCTS) to iteratively refine inputs, thereby maximizing the likelihood of uncovering agent weaknesses. We evaluate AgentVigil on two public benchmarks, AgentDojo and VWA-adv, where it achieves 71% and 70% success rates against agents based on o3-mini and GPT-4o, respectively, nearly doubling the performance of baseline attacks. Moreover, AgentVigil exhibits strong transferability across unseen tasks and internal LLMs, as well as promising results against defenses. Beyond benchmark evaluations, we apply our attacks in real-world environments, successfully misleading agents to navigate to arbitrary URLs, including malicious sites.

In addressing the critical need for safety in Large Language Models (LLMs), it is crucial to ensure that the outputs are not only safe but also retain their contextual accuracy. Many existing LLMs are safe fine-tuned either with safety demonstrations, or rely only on adversarial testing. While able to get safe outputs, they often risk losing contextual meaning as they mitigate bias and toxicity. In response, we present MBIAS, a LLM framework instruction fine-tuned on a custom dataset specifically designed for safety interventions. MBIAS aims to address the significant issues of bias and toxicity in LLMs generations that typically manifest as underrepresentation or negative portrayals across various demographics, including inappropriate linguistic mentions and biased content in social media. We experiment on MBIAS for safety interventions using various configurations, and demonstrate more than a 30\% reduction in overall bias and toxicity while successfully retaining key information. Additionally, a demographic analysis on an out-of-distribution test set confirms the robustness of our approach, with reductions in bias and toxicity exceeding 90\% across various demographics. The dataset and instruction fine-tuned MBIAS are made available to the research community at https://huggingface.co/newsmediabias/MBIAS.

Context utilisation, the ability of Language Models (LMs) to incorporate relevant information from the provided context when generating responses, remains largely opaque to users, who cannot determine whether models draw from parametric memory or provided context, nor identify which specific context pieces inform the response. Highlight explanations (HEs) offer a natural solution as they can point the exact context pieces and tokens that influenced model outputs. However, no existing work evaluates their effectiveness in accurately explaining context utilisation. We address this gap by introducing the first gold standard HE evaluation framework for context attribution, using controlled test cases with known ground-truth context usage, which avoids the limitations of existing indirect proxy evaluations. To demonstrate the framework's broad applicability, we evaluate four HE methods -- three established techniques and MechLight, a mechanistic interpretability approach we adapt for this task -- across four context scenarios, four datasets, and five LMs. Overall, we find that MechLight performs best across all context scenarios. However, all methods struggle with longer contexts and exhibit positional biases, pointing to fundamental challenges in explanation accuracy that require new approaches to deliver reliable context utilisation explanations at scale.

Software testing is a crucial phase in the software life cycle, helping identify potential risks and reduce maintenance costs. With the advancement of Large Language Models (LLMs), researchers have proposed an increasing number of LLM-based software testing techniques, particularly in the area of test case generation. Despite the growing interest, limited efforts have been made to thoroughly evaluate the actual capabilities of LLMs in this task. In this paper, we introduce TestBench, a benchmark for class-level LLM-based test case generation. We construct a dataset of 108 Java programs from 9 real-world, large-scale projects on GitHub, each representing a different thematic domain. We then design three distinct types of prompts based on context descriptions, including self-contained context, full context, and simple context. Besides, we propose a fine-grained evaluation framework that considers five aspects of test cases: syntactic correctness, compilation correctness, test correctness, code coverage rate, and defect detection rate. Furthermore, we propose a heuristic algorithm to repair erroneous test cases generated by LLMs. We evaluate CodeLlama-13b, GPT-3.5, and GPT-4 on the TestBench, and our experimental results indicate that larger models demonstrate a greater ability to effectively utilize contextual information, thus generating higher-quality test cases. Smaller models may struggle with the noise introduced by the extensive information contained within the full context. However, when using the simplified version, namely the simple context, which is derived from the full context via abstract syntax tree analysis, the performance of these models improves significantly. Our analysis highlights the current progress and pinpoints future directions to further enhance the effectiveness of models by handling contextual information for test case generation.

Safety-aligned language models often refuse prompts that are actually harmless. Current evaluations mostly report global rates such as false rejection or compliance. These scores treat each prompt alone and miss local inconsistency, where a model accepts one phrasing of an intent but rejects a close paraphrase. This gap limits diagnosis and tuning. We introduce "semantic confusion," a failure mode that captures such local inconsistency, and a framework to measure it. We build ParaGuard, a 10k-prompt corpus of controlled paraphrase clusters that hold intent fixed while varying surface form. We then propose three model-agnostic metrics at the token level: Confusion Index, Confusion Rate, and Confusion Depth. These metrics compare each refusal to its nearest accepted neighbors and use token embeddings, next-token probabilities, and perplexity signals. Experiments across diverse model families and deployment guards show that global false-rejection rate hides critical structure. Our metrics reveal globally unstable boundaries in some settings, localized pockets of inconsistency in others, and cases where stricter refusal does not increase inconsistency. We also show how confusion-aware auditing separates how often a system refuses from how sensibly it refuses. This gives developers a practical signal to reduce false refusals while preserving safety.

Context lengths for models have grown rapidly, from thousands to millions of tokens in just a few years. The extreme context sizes of modern long-context models have made it difficult to construct realistic long-context benchmarks -- not only due to the cost of collecting million-context tasks but also in identifying realistic scenarios that require significant contexts. We identify code comprehension and repair as a natural testbed and challenge task for long-context models and introduce LongCodeBench (LCB), a benchmark to test LLM coding abilities in long-context scenarios. Our benchmark tests both the comprehension and repair capabilities of LCLMs in realistic and important settings by drawing from real-world GitHub issues and constructing QA (LongCodeQA) and bug fixing (LongSWE-Bench) tasks. We carefully stratify the complexity of our benchmark, enabling us to evaluate models across different scales -- ranging from Qwen2.5 14B Instruct to Google's flagship Gemini model. We find that long-context remains a weakness for all models, with performance drops such as from 29% to 3% for Claude 3.5 Sonnet, or from 70.2% to 40% for Qwen2.5.

Augmenting LLMs with context leads to improved performance across many applications. Despite much research on Retrieval Augmented Generation (RAG) systems, an open question is whether errors arise because LLMs fail to utilize the context from retrieval or the context itself is insufficient to answer the query. To shed light on this, we develop a new notion of sufficient context, along with a way to classify instances that have enough information to answer the query. We then use sufficient context to analyze several models and datasets. By stratifying errors based on context sufficiency, we find that proprietary LLMs (Gemini, GPT, Claude) excel at answering queries when the context is sufficient, but often output incorrect answers instead of abstaining when the context is not. On the other hand, open-source LLMs (Llama, Mistral, Gemma) hallucinate or abstain often, even with sufficient context. We further categorize cases when the context is useful, and improves accuracy, even though it does not fully answer the query and the model errs without the context. Building on our findings, we explore ways to reduce hallucinations in RAG systems, including a new selective generation method that leverages sufficient context information for guided abstention. Our method improves the fraction of correct answers among times where the model responds by 2-10% for Gemini, GPT, and Gemma.

To standardize interactions between LLM-based agents and their environments, the Model Context Protocol (MCP) was proposed and has since been widely adopted. However, integrating external tools expands the attack surface, exposing agents to tool poisoning attacks. In such attacks, malicious instructions embedded in tool metadata are injected into the agent context during MCP registration phase, thereby manipulating agent behavior. Prior work primarily focuses on explicit tool poisoning or relied on manually crafted poisoned tools. In contrast, we focus on a particularly stealthy variant: implicit tool poisoning, where the poisoned tool itself remains uninvoked. Instead, the instructions embedded in the tool metadata induce the agent to invoke a legitimate but high-privilege tool to perform malicious operations. We propose MCP-ITP, the first automated and adaptive framework for implicit tool poisoning within the MCP ecosystem. MCP-ITP formulates poisoned tool generation as a black-box optimization problem and employs an iterative optimization strategy that leverages feedback from both an evaluation LLM and a detection LLM to maximize Attack Success Rate (ASR) while evading current detection mechanisms. Experimental results on the MCPTox dataset across 12 LLM agents demonstrate that MCP-ITP consistently outperforms the manually crafted baseline, achieving up to 84.2% ASR while suppressing the Malicious Tool Detection Rate (MDR) to as low as 0.3%.

Large language models now solve many benchmark math problems at near-expert levels, yet this progress has not fully translated into reliable performance in real-world applications. We study this gap through contextual mathematical reasoning, where the mathematical core must be formulated from descriptive scenarios. We introduce ContextMATH, a benchmark that repurposes AIME and MATH-500 problems into two contextual settings: Scenario Grounding (SG), which embeds abstract problems into realistic narratives without increasing reasoning complexity, and Complexity Scaling (CS), which transforms explicit conditions into sub-problems to capture how constraints often appear in practice. Evaluating 61 proprietary and open-source models, we observe sharp drops: on average, open-source models decline by 13 and 34 points on SG and CS, while proprietary models drop by 13 and 20. Error analysis shows that errors are dominated by incorrect problem formulation, with formulation accuracy declining as original problem difficulty increases. Correct formulation emerges as a prerequisite for success, and its sufficiency improves with model scale, indicating that larger models advance in both understanding and reasoning. Nevertheless, formulation and reasoning remain two complementary bottlenecks that limit contextual mathematical problem solving. Finally, we find that fine-tuning with scenario data improves performance, whereas formulation-only training is ineffective. However, performance gaps are only partially alleviated, highlighting contextual mathematical reasoning as a central unsolved challenge for LLMs.

AI agents often fail in ways that are difficult to localize because executions are probabilistic, long-horizon, multi-agent, and mediated by noisy tool outputs. We address this gap by manually annotating failed agent runs and release a novel benchmark of 115 failed trajectories spanning structured API workflows, incident management, and open-ended web/file tasks. Each trajectory is annotated with a critical failure step and a category from a grounded-theory derived, cross-domain failure taxonomy. To mitigate the human cost of failure attribution, we present AGENTRX, an automated domain-agnostic diagnostic framework that pinpoints the critical failure step in a failed agent trajectory. It synthesizes constraints, evaluates them step-by-step, and produces an auditable validation log of constraint violations with associated evidence; an LLM-based judge uses this log to localize the critical step and category. Our framework improves step localization and failure attribution over existing baselines across three domains.

Warning: this paper contains content that may be inappropriate or offensive. As generative models become available for public use in various applications, testing and analyzing vulnerabilities of these models has become a priority. Here we propose an automatic red teaming framework that evaluates a given model and exposes its vulnerabilities against unsafe and inappropriate content generation. Our framework uses in-context learning in a feedback loop to red team models and trigger them into unsafe content generation. We propose different in-context attack strategies to automatically learn effective and diverse adversarial prompts for text-to-image models. Our experiments demonstrate that compared to baseline approaches, our proposed strategy is significantly more effective in exposing vulnerabilities in Stable Diffusion (SD) model, even when the latter is enhanced with safety features. Furthermore, we demonstrate that the proposed framework is effective for red teaming text-to-text models, resulting in significantly higher toxic response generation rate compared to previously reported numbers.

Multiple prompt injection attacks have been proposed against web agents. At the same time, various methods have been developed to detect general prompt injection attacks, but none have been systematically evaluated for web agents. In this work, we bridge this gap by presenting the first comprehensive benchmark study on detecting prompt injection attacks targeting web agents. We begin by introducing a fine-grained categorization of such attacks based on the threat model. We then construct datasets containing both malicious and benign samples: malicious text segments generated by different attacks, benign text segments from four categories, malicious images produced by attacks, and benign images from two categories. Next, we systematize both text-based and image-based detection methods. Finally, we evaluate their performance across multiple scenarios. Our key findings show that while some detectors can identify attacks that rely on explicit textual instructions or visible image perturbations with moderate to high accuracy, they largely fail against attacks that omit explicit instructions or employ imperceptible perturbations. Our datasets and code are released at: https://github.com/Norrrrrrr-lyn/WAInjectBench.

Large Language Model (LLM)-powered multi-agent systems (MAS) have rapidly advanced collaborative reasoning, tool use, and role-specialized coordination in complex tasks. However, reliability-critical deployment remains hindered by a systemic failure mode: hierarchical compliance under instruction conflicts (system-user, peer-peer), where agents misprioritize system-level rules in the presence of competing demands. Moreover, widely used macro-level metrics (e.g., pass@k) obscure these micro-level violations and offer little actionable guidance for remedy. In this work, we present a full-stack, three-stage framework: (1) Diagnose - Contextualized Role Adherence Score (CRAS), a query-wise, context-aware scoring metric that decomposes role adherence into four measurable dimensions; (2) Localize - attention drift analysis revealing that instruction conflicts are resolved by attention heads that are largely concentrated in middle layers; (3) Align - Surgical Alignment of Instruction Layers (SAIL), which installs LoRA only on the localized focal layers and optimizes a token-weighted DPO-style preference objective that credits tokens by their focal attentional contribution. Across standard benchmarks and MAS frameworks, our surgical approach improves instruction hierarchy compliance (e.g., +5.60% with AutoGen on MedQA) without full-model finetuning.

LLM-based coding agents have shown strong performance on automated issue resolution benchmarks, yet existing evaluations largely focus on final task success, providing limited insight into how agents retrieve and use code context during problem solving. We introduce ContextBench, a process-oriented evaluation of context retrieval in coding agents. ContextBench consists of 1,136 issue-resolution tasks from 66 repositories across eight programming languages, each augmented with human-annotated gold contexts. We further implement an automated evaluation framework that tracks agent trajectories and measures context recall, precision, and efficiency throughout issue resolution. Using ContextBench, we evaluate four frontier LLMs and five coding agents. Our results show that sophisticated agent scaffolding yields only marginal gains in context retrieval ("The Bitter Lesson" of coding agents), LLMs consistently favor recall over precision, and substantial gaps exist between explored and utilized context. ContextBench augments existing end-to-end benchmarks with intermediate gold-context metrics that unbox the issue-resolution process. These contexts offer valuable intermediate signals for guiding LLM reasoning in software tasks.

Large Language Models (LLMs) are susceptible to Jailbreaking attacks, which aim to extract harmful information by subtly modifying the attack query. As defense mechanisms evolve, directly obtaining harmful information becomes increasingly challenging for Jailbreaking attacks. In this work, inspired by human practices of indirect context to elicit harmful information, we focus on a new attack form called Contextual Interaction Attack. The idea relies on the autoregressive nature of the generation process in LLMs. We contend that the prior context--the information preceding the attack query--plays a pivotal role in enabling potent Jailbreaking attacks. Specifically, we propose an approach that leverages preliminary question-answer pairs to interact with the LLM. By doing so, we guide the responses of the model toward revealing the 'desired' harmful information. We conduct experiments on four different LLMs and demonstrate the efficacy of this attack, which is black-box and can also transfer across LLMs. We believe this can lead to further developments and understanding of the context vector in LLMs.

LLM agents increasingly act by writing code, yet a split persists between the runtime that drives the agent and the code the model writes. The runtime owns the loop, context, and control flow, and the model has little say over any of them. Letting model-written code shape the runtime itself would make agents more expressive, but it would also sharpen safety problems. A model can be diverted by a prompt injection, call the wrong tool, or fail partway and leave an inconsistent state, and each such failure reaches further when the code shapes the runtime than when it expresses a single action. We present LACUNA, a programming model for agents that closes this split while preserving safety. Each agent action is a typed call agent[T](task) that the LLM fills with code when execution reaches it, and the code is type-checked against the surrounding program before it runs. Because each action is accepted or rejected as a whole, a rejected one leaves the environment untouched, and its compiler diagnostics drive a retry. The same check also bounds which tools and data an action may use and how they flow. Our primitive expresses ReAct loops, sub-agents, skills, parallel decomposition, and multi-model planning as ordinary control flow. We evaluate LACUNA on a collection of test cases, BrowseComp-Plus, and τ^2-bench. On BrowseComp-Plus, 8.6% of generations are rejected before execution, with 0.7 retries per query on average, and the agent reaches 27.1% accuracy. On τ^2-bench, LACUNA solves 76.0% of 392 tasks across four domains with a capable model, on par with the baseline agent.

Large Language Models (LLMs) have enabled the development of powerful agentic systems capable of automating complex workflows across various fields. However, these systems are highly vulnerable to indirect prompt injection attacks, where malicious instructions embedded in external data can hijack agent behavior. In this work, we present ReasAlign, a model-level solution to improve safety alignment against indirect prompt injection attacks. The core idea of ReasAlign is to incorporate structured reasoning steps to analyze user queries, detect conflicting instructions, and preserve the continuity of the user's intended tasks to defend against indirect injection attacks. To further ensure reasoning logic and accuracy, we introduce a test-time scaling mechanism with a preference-optimized judge model that scores reasoning steps and selects the best trajectory. Comprehensive evaluations across various benchmarks show that ReasAlign maintains utility comparable to an undefended model while consistently outperforming Meta SecAlign, the strongest prior guardrail. On the representative open-ended CyberSecEval2 benchmark, which includes multiple prompt-injected tasks, ReasAlign achieves 94.6% utility and only 3.6% ASR, far surpassing the state-of-the-art defensive model of Meta SecAlign (56.4% utility and 74.4% ASR). These results demonstrate that ReasAlign achieves the best trade-off between security and utility, establishing a robust and practical defense against prompt injection attacks in real-world agentic systems. Our code and experimental results could be found at https://github.com/leolee99/ReasAlign.

Recent advances in long-context language models (LMs) have enabled million-token inputs, expanding their capabilities across complex tasks like computer-use agents. Yet, the safety implications of these extended contexts remain unclear. To bridge this gap, we introduce NINJA (short for Needle-in-haystack jailbreak attack), a method that jailbreaks aligned LMs by appending benign, model-generated content to harmful user goals. Critical to our method is the observation that the position of harmful goals play an important role in safety. Experiments on standard safety benchmark, HarmBench, show that NINJA significantly increases attack success rates across state-of-the-art open and proprietary models, including LLaMA, Qwen, Mistral, and Gemini. Unlike prior jailbreaking methods, our approach is low-resource, transferable, and less detectable. Moreover, we show that NINJA is compute-optimal -- under a fixed compute budget, increasing context length can outperform increasing the number of trials in best-of-N jailbreak. These findings reveal that even benign long contexts -- when crafted with careful goal positioning -- introduce fundamental vulnerabilities in modern LMs.

Instruction tuning is an effective technique to align large language models (LLMs) with human intents. In this work, we investigate how an adversary can exploit instruction tuning by injecting specific instruction-following examples into the training data that intentionally changes the model's behavior. For example, an adversary can achieve content injection by injecting training examples that mention target content and eliciting such behavior from downstream models. To achieve this goal, we propose AutoPoison, an automated data poisoning pipeline. It naturally and coherently incorporates versatile attack goals into poisoned data with the help of an oracle LLM. We showcase two example attacks: content injection and over-refusal attacks, each aiming to induce a specific exploitable behavior. We quantify and benchmark the strength and the stealthiness of our data poisoning scheme. Our results show that AutoPoison allows an adversary to change a model's behavior by poisoning only a small fraction of data while maintaining a high level of stealthiness in the poisoned examples. We hope our work sheds light on how data quality affects the behavior of instruction-tuned models and raises awareness of the importance of data quality for responsible deployments of LLMs. Code is available at https://github.com/azshue/AutoPoison.

Prompt injection has emerged as a critical vulnerability in large language model (LLM) deployments, yet existing research is heavily weighted toward defenses. The attack side -- specifically, which injection strategies are most effective and why -- remains insufficiently studied.We address this gap with AttackEval, a systematic empirical study of prompt injection attack effectiveness. We construct a taxonomy of ten attack categories organized into three parent groups (Syntactic, Contextual, and Semantic/Social), populate each category with 25 carefully crafted prompts (250 total), and evaluate them against a simulated production victim system under four progressively stronger defense tiers. Experiments reveal several non-obvious findings: (1) Obfuscation (OBF) achieves the highest single-attack success rate (ASR = 0.76) against even intent-aware defenses, because it defeats both keyword matching and semantic similarity checks simultaneously; (2) Semantic/Social attacks - Emotional Manipulation (EM) and Reward Framing (RF) - maintain high ASR (0.44-0.48) against intent-aware defenses due to their natural language surface, which evades structural anomaly detection; (3) Composite attacks combining two complementary strategies dramatically boost ASR, with the OBF + EM pair reaching 97.6%; (4) Stealth correlates positively with residual ASR against semantic defenses (r = 0.71), implying that future defenses must jointly optimize for both structural and behavioral signals. Our findings identify concrete blind spots in current defenses and provide actionable guidance for designing more robust LLM safety systems.

Context engineering has emerged as a pivotal paradigm for unlocking the potential of Large Language Models (LLMs) in Software Engineering (SE) tasks, enabling performance gains at test time without model fine-tuning. Despite its success, existing research lacks a systematic taxonomy of SE-specific context types and a dedicated benchmark to quantify the heterogeneous effects of different contexts across core SE workflows. To address this gap, we propose CL4SE (Context Learning for Software Engineering), a comprehensive benchmark featuring a fine-grained taxonomy of four SE-oriented context types (interpretable examples, project-specific context, procedural decision-making context, and positive & negative context), each mapped to a representative task (code generation, code summarization, code review, and patch correctness assessment). We construct high-quality datasets comprising over 13,000 samples from more than 30 open-source projects and evaluate five mainstream LLMs across nine metrics. Extensive experiments demonstrate that context learning yields an average performance improvement of 24.7% across all tasks. Specifically, procedural context boosts code review performance by up to 33% (Qwen3-Max), mixed positive-negative context improves patch assessment by 30% (DeepSeek-V3), project-specific context increases code summarization BLEU by 14.78% (GPT-Oss-120B), and interpretable examples enhance code generation PASS@1 by 5.72% (DeepSeek-V3). CL4SE establishes the first standardized evaluation framework for SE context learning, provides actionable empirical insights into task-specific context design, and releases a large-scale dataset to facilitate reproducible research in this domain.

Large language models (LLMs) introduce new security risks, but there are few comprehensive evaluation suites to measure and reduce these risks. We present BenchmarkName, a novel benchmark to quantify LLM security risks and capabilities. We introduce two new areas for testing: prompt injection and code interpreter abuse. We evaluated multiple state-of-the-art (SOTA) LLMs, including GPT-4, Mistral, Meta Llama 3 70B-Instruct, and Code Llama. Our results show that conditioning away risk of attack remains an unsolved problem; for example, all tested models showed between 26% and 41% successful prompt injection tests. We further introduce the safety-utility tradeoff: conditioning an LLM to reject unsafe prompts can cause the LLM to falsely reject answering benign prompts, which lowers utility. We propose quantifying this tradeoff using False Refusal Rate (FRR). As an illustration, we introduce a novel test set to quantify FRR for cyberattack helpfulness risk. We find many LLMs able to successfully comply with "borderline" benign requests while still rejecting most unsafe requests. Finally, we quantify the utility of LLMs for automating a core cybersecurity task, that of exploiting software vulnerabilities. This is important because the offensive capabilities of LLMs are of intense interest; we quantify this by creating novel test sets for four representative problems. We find that models with coding capabilities perform better than those without, but that further work is needed for LLMs to become proficient at exploit generation. Our code is open source and can be used to evaluate other LLMs.

Tool calling has emerged as a critical capability for AI agents to interact with the real world and solve complex tasks. While the Model Context Protocol (MCP) provides a powerful standardized framework for tool integration, there is a significant gap in benchmarking how well AI agents can effectively solve multi-step tasks using diverse MCP tools in realistic, dynamic scenarios. In this work, we present LiveMCP-101, a benchmark of 101 carefully curated real-world queries, refined through iterative LLM rewriting and manual review, that require coordinated use of multiple MCP tools including web search, file operations, mathematical reasoning, and data analysis. Moreover, we introduce a novel evaluation approach that leverages ground-truth execution plans rather than raw API outputs, better reflecting the evolving nature of real-world environments. Experiments show that even frontier LLMs achieve a success rate below 60\%, highlighting major challenges in tool orchestration. Detailed ablations and error analysis further reveal distinct failure modes and inefficiencies in token usage, pointing to concrete directions for advancing current models. LiveMCP-101 sets a rigorous standard for evaluating real-world agent capabilities, advancing toward autonomous AI systems that reliably execute complex tasks through tool use.

State-of-the-art large language models (LLMs) are now claiming remarkable supported context lengths of 256k or even more. In contrast, the average context lengths of mainstream benchmarks are insufficient (5k-21k), and they suffer from potential knowledge leakage and inaccurate metrics, resulting in biased evaluation. This paper introduces LV-Eval, a challenging long-context benchmark with five length levels (16k, 32k, 64k, 128k, and 256k) reaching up to 256k words. LV-Eval features two main tasks, single-hop QA and multi-hop QA, comprising 11 bilingual datasets. The design of LV-Eval has incorporated three key techniques, namely confusing facts insertion, keyword and phrase replacement, and keyword-recall-based metric design. The advantages of LV-Eval include controllable evaluation across different context lengths, challenging test instances with confusing facts, mitigated knowledge leakage, and more objective evaluations. We evaluate 10 LLMs on LV-Eval and conduct ablation studies on the techniques used in LV-Eval construction. The results reveal that: (i) Commercial LLMs generally outperform open-source LLMs when evaluated within length levels shorter than their claimed context length. However, their overall performance is surpassed by open-source LLMs with longer context lengths. (ii) Extremely long-context LLMs, such as Yi-6B-200k, exhibit a relatively gentle degradation of performance, but their absolute performances may not necessarily be higher than those of LLMs with shorter context lengths. (iii) LLMs' performances can significantly degrade in the presence of confusing information, especially in the pressure test of "needle in a haystack". (iv) Issues related to knowledge leakage and inaccurate metrics introduce bias in evaluation, and these concerns are alleviated in LV-Eval. All datasets and evaluation codes are released at: https://github.com/infinigence/LVEval.

The Model Context Protocol (MCP) has become a common interface for connecting large language model (LLM) agents to external tools, but its reliance on stateless, eager schema injection imposes a hidden per-turn overhead the MCP Tax or Tools Tax that practitioner reports place between roughly 10k and 60k tokens in typical multi-server deployments. This payload inflates the key-value cache, is associated with reasoning degradation as context utilization approaches published fracture points around 70%, and turns token budgets into a recurring operational cost. We introduce Tool Attention, a middleware-layer mechanism that generalizes the "Attention Is All You Need" paradigm from self-attention over tokens to gated attention over tools. Tool Attention combines (i) an Intent Schema Overlap (ISO) score from sentence embeddings, (ii) a state-aware gating function enforcing preconditions and access scopes, and (iii) a two-phase lazy schema loader that keeps a compact summary pool in context and promotes full JSON schemas only for top-k gated tools. We evaluate on a simulated 120-tool, six-server benchmark whose per-server token counts are calibrated to public audits of real MCP deployments. In this simulation, Tool Attention directly reduces measured per-turn tool tokens by 95.0% (47.3k -> 2.4k) and raises effective context utilization (a token-ratio quantity) from 24% to 91%. End-to-end figures for task success, latency, cost, and reasoning quality are reported as projections derived from the measured token counts combined with published deployment telemetry; they are not measured on live LLM agents, and we mark projected values explicitly throughout. Taken together, the results support a simple thesis: protocol-level efficiency, not raw context length, is a binding constraint on scalable gentic systems. The code for this work is accessible at https://github.com/asadani/tool-attention

As Large Language Models (LLMs) continue to advance in understanding and generating long sequences, new safety concerns have been introduced through the long context. However, the safety of LLMs in long-context tasks remains under-explored, leaving a significant gap in both evaluation and improvement of their safety. To address this, we introduce LongSafety, the first comprehensive benchmark specifically designed to evaluate LLM safety in open-ended long-context tasks. LongSafety encompasses 7 categories of safety issues and 6 user-oriented long-context tasks, with a total of 1,543 test cases, averaging 5,424 words per context. Our evaluation towards 16 representative LLMs reveals significant safety vulnerabilities, with most models achieving safety rates below 55%. Our findings also indicate that strong safety performance in short-context scenarios does not necessarily correlate with safety in long-context tasks, emphasizing the unique challenges and urgency of improving long-context safety. Moreover, through extensive analysis, we identify challenging safety issues and task types for long-context models. Furthermore, we find that relevant context and extended input sequences can exacerbate safety risks in long-context scenarios, highlighting the critical need for ongoing attention to long-context safety challenges. Our code and data are available at https://github.com/thu-coai/LongSafety.

Reinforcement Learning from Verifiable Rewards (RLVR) suffers from exploration inefficiency, where models struggle to generate successful rollouts, resulting in minimal learning signal. This challenge is particularly severe for tasks that require the acquisition of novel reasoning patterns or domain-specific knowledge. To address this, we propose Context Bootstrapped Reinforcement Learning (CBRL), which augments RLVR training by stochastically prepending few-shot demonstrations to training prompts. The injection probability follows a curriculum that starts high to bootstrap early exploration, then anneals to zero so the model must ultimately succeed without assistance. This forces the policy to internalize reasoning patterns from the demonstrations rather than relying on them at test time. We validate CBRL across two model families and five Reasoning Gym tasks. Our results demonstrate that CBRL consistently improves success rate, provides better exploration efficiency, and is algorithm-agnostic. We further demonstrate CBRL's practical applicability on Q, a domain-specific programming language that diverges significantly from mainstream language conventions.

Deep learning and language models are increasingly dominating automated program repair research. While previous generate-and-validate approaches were able to find and use fix ingredients on a file or even project level, neural language models are limited to the code that fits their input window. In this work we investigate how important identifier ingredients are in neural program repair and present ScanFix, an approach that leverages an additional scanner model to extract identifiers from a bug's file and potentially project-level context. We find that lack of knowledge of far-away identifiers is an important cause of failed repairs. Augmenting repair model input with scanner-extracted identifiers yields relative improvements of up to 31%. However, ScanFix is outperformed by a model with a large input window (> 5k tokens). When passing ingredients from the ground-truth fix, improvements are even higher. This shows that, with refined extraction techniques, ingredient scanning, similar to fix candidate ranking, could have the potential to become an important subtask of future automated repair systems. At the same time, it also demonstrates that this idea is subject to Sutton's bitter lesson and may be rendered unnecessary by new code models with ever-increasing context windows.

Large Language Models (LLMs) are increasingly integrated into real-world applications, from virtual assistants to autonomous agents. However, their flexibility also introduces new attack vectors-particularly Prompt Injection (PI), where adversaries manipulate model behavior through crafted inputs. As attackers continuously evolve with paraphrased, obfuscated, and even multi-task injection strategies, existing benchmarks are no longer sufficient to capture the full spectrum of emerging threats. To address this gap, we construct a new benchmark that systematically extends prior efforts. Our benchmark subsumes the two widely-used existing ones while introducing new manipulation techniques and multi-task scenarios, thereby providing a more comprehensive evaluation setting. We find that existing defenses, though effective on their original benchmarks, show clear weaknesses under our benchmark, underscoring the need for more robust solutions. Our key insight is that while attack forms may vary, the adversary's intent-injecting an unauthorized task-remains invariant. Building on this observation, we propose PromptSleuth, a semantic-oriented defense framework that detects prompt injection by reasoning over task-level intent rather than surface features. Evaluated across state-of-the-art benchmarks, PromptSleuth consistently outperforms existing defense while maintaining comparable runtime and cost efficiency. These results demonstrate that intent-based semantic reasoning offers a robust, efficient, and generalizable strategy for defending LLMs against evolving prompt injection threats.