Daily Papers

AI agent systems increasingly rely on reusable non-LLM engineering infrastructure that packages tool mediation, context handling, delegation, safety control, and orchestration. Yet the architectural design decisions in this surrounding infrastructure remain understudied. This paper presents a protocol-guided, source-grounded empirical study of 70 publicly available agent-system projects, addressing three questions: which design-decision dimensions recur across projects, which co-occurrences structure those decisions, and which typical architectural patterns emerge. Methodologically, we contribute a transparent investigation procedure for analyzing heterogeneous agent-system corpora through source-code and technical-material reading. Empirically, we identify five recurring design dimensions (subagent architecture, context management, tool systems, safety mechanisms, and orchestration) and find that the corpus favors file-persistent, hybrid, and hierarchical context strategies; registry-oriented tool systems remain dominant while MCP- and plugin-oriented extensions are emerging; and intermediate isolation is common but high-assurance audit is rare. Cross-project co-occurrence analysis reveals that deeper coordination pairs with more explicit context services, stronger execution environments with more structured governance, and formalized tool-registration boundaries with broader ecosystem ambitions. We synthesize five recurring architectural patterns spanning lightweight tools, balanced CLI frameworks, multi-agent orchestrators, enterprise systems, and scenario-verticalized projects. The result provides an evidence-based account of architectural regularities in agent-system engineering, with grounded guidance for framework designers, selectors, and researchers.

Modern scientific research relies on large-scale data, complex workflows, and specialized tools, which existing LLMs and tool-based agents struggle to handle due to limitations in long-horizon planning, robust goal maintenance, and continual learning from execution. To address these issues, in this work, we propose S1-NexusAgent, a self-evolving agent framework designed for multidisciplinary scientific research. S1-NexusAgent adopts a hierarchical Plan-and-CodeAct execution paradigm, decoupling global scientific planning from subtask-level tool execution through a dual-loop architecture, thereby enabling stable modeling of complex research workflows. The system natively supports the Model Context Protocol (MCP), integrates up to thousands of cross-disciplinary scientific tools, and achieves efficient orchestration of heterogeneous research tools via intention-aware dynamic tool retrieval and hot-plug mechanisms. To address long-context and large-scale data challenges in scientific settings, S1-NexusAgent introduces object-reference-based sparse context management, which enables sub-task context isolation and intermediate result compression. Building on this, a Critic Agent automatically evaluates complete execution trajectories and distills high-quality research paths into reusable Scientific Skills, forming a closed loop for continuous self-evolution, which is valuable for sustainable and long-horizon scientific research. Experiments on authoritative scientific benchmarks involving long-horizon planning and complex specialized tool orchestration, including biomini-eval (biology), ChemBench (chemistry), and MatSciBench (material science), demonstrate that S1-NexusAgent achieves state-of-the-art performance, validating its effectiveness and generalization capability in complex scientific tasks.

We present AutoCompress, a transformer compression method motivated by an empirical finding: in small transformers, Layer 0 carries disproportionately high task-critical information, with an NTK-based importance score of 3.6 compared to a maximum of 0.054 for all other layers -- a gap of over 60x. Based on this finding, we propose Critical Layer Isolation (CLI), an architecture that protects Layer 0 at full dimensionality, compresses all intermediate layers through a learned bottleneck, and restores the full dimension at the final layer. Applied to GPT-2 Medium (354.8M parameters), CLI-GPT2 achieves 204.5 perplexity on WikiText-103 with only 143.8M parameters -- a 2.47x compression ratio and 59.5% parameter reduction. Crucially, an ablation study demonstrates that a uniform bottleneck baseline of comparable size achieves only 571.8 perplexity under identical training conditions, confirming that the architectural decision to protect Layer 0 -- rather than simply reducing model size -- is the primary driver of performance. Code and checkpoints are publicly available.

Discrete diffusion language models (dLLMs) generate text by iteratively denoising a masked sequence. However, standard dLLMs condition each denoising step solely on the current hard-masked sequence, while intermediate continuous representations are discarded after sampling and remasking. We term this bottleneck the Information Island issue: continuous information remains isolated within individual denoising steps and fails to propagate across the trajectory. This bottleneck is especially harmful for reasoning, which requires intermediate reasoning state to be preserved and updated across many denoising steps. To address this limitation, we introduce MetaState, a lightweight recurrent augmentation that equips a frozen dLLM backbone with persistent, fixed-size working memory. MetaState comprises three modules with a shared time conditioner: a cross-attention Mixer that reads backbone activations into memory slots, a GRU-style Updater that integrates information across steps, and a cross-attention Injector that writes the updated memory back into the backbone. We train these modules with a dedicated K-step unrolling pipeline to learn multi-step dynamics. MetaState adds only {sim}0.6% trainable parameters while keeping the backbone frozen, and consistently improves reasoning performance over frozen baselines on mathematical reasoning and code generation benchmarks, with an average gain of 4.5% across all evaluations.

We present Paris, the first publicly released diffusion model pre-trained entirely through decentralized computation. Paris demonstrates that high-quality text-to-image generation can be achieved without centrally coordinated infrastructure. Paris is open for research and commercial use. Paris required implementing our Distributed Diffusion Training framework from scratch. The model consists of 8 expert diffusion models (129M-605M parameters each) trained in complete isolation with no gradient, parameter, or intermediate activation synchronization. Rather than requiring synchronized gradient updates across thousands of GPUs, we partition data into semantically coherent clusters where each expert independently optimizes its subset while collectively approximating the full distribution. A lightweight transformer router dynamically selects appropriate experts at inference, achieving generation quality comparable to centrally coordinated baselines. Eliminating synchronization enables training on heterogeneous hardware without specialized interconnects. Empirical validation confirms that Paris's decentralized training maintains generation quality while removing the dedicated GPU cluster requirement for large-scale diffusion models. Paris achieves this using 14times less training data and 16times less compute than the prior decentralized baseline.

While multimodal reasoning has advanced rapidly, solving complex geometry problems critically hinges on active visual assistance, such as constructing auxiliary lines, spurring the rise of Visual Chain-of-Thought (VCoT). However, existing evaluations typically assess visual generation quality and final answer accuracy in isolation, failing to examine whether intermediate visual aids are geometrically valid, effectively utilized in subsequent reasoning, or causally responsible for task success. To bridge this gap, we introduce GeoVAD-Bench, a diagnostic benchmark that pairs a fine-grained five-dimensional trajectory diagnosis covering perception, auxiliary quality, utilization, deductive reasoning, and final correctness with controlled No-Aux, Auto-Aux, and GT-Aux intervention settings to systematically isolate intermediate error modes, the causal gains of visual aids, and the resulting autonomy gap. Our findings reveal that while high-quality auxiliary aids offer substantial theoretical gains for geometric problem solving, autonomous generation is frequently hampered by compounding errors across geometric perception, faithful visual manipulation, visual-state grounding, and deductive reasoning. Guided by these diagnostic insights, we establish a specialized data construction pipeline encompassing geometric perception, diagram editing, and interleaved visual-textual reasoning trajectories, and develop a progressive SFT and multimodal RL training framework. The resulting model, GeoWeave-8B, outperforms the base model by +25.3% in final geometric accuracy and achieves a +30.4% gain in process average across the four intermediate diagnostic dimensions.

Deep research systems iteratively plan, gather evidence, synthesize, and revise, making end-to-end latency a key bottleneck for interactive use. Almost all production systems are built on autoregressive (AR) language models and inherit left-to-right decoding in planning and long-form writing. We present DiffResearch, an open multi-agent deep research framework that places a diffusion language model (dLLM) at the core of every stage, and measure how a diffusion backbone changes latency and report quality. Holding the agentic scaffold, retrieval code, prompts, and evaluation fixed, we swap the backbone between an open diffusion model and a comparable AR model. Across 100 Deep Research Bench tasks, the diffusion backbone is roughly 6 times faster end-to-end, driven by order-of-magnitude reductions in planning and writing. We further introduce dFast, a decomposition mode that reads intermediate denoising states and extracts subqueries before generation finishes, providing a 1.99 times median speedup for decomposition in isolation with no loss of report quality. On the benchmark's RACE rubric, dFast obtains the best overall score among the three configurations. Finally, in a public system-level leaderboard snapshot, an instance built on a stronger diffusion model ranks above several commercial systems. We release DiffResearch under an Apache-2.0 license.

Under pure textual modality, Large Language Models (LLMs) have demonstrated remarkable success in complex reasoning tasks by decomposing them into simpler sub-problems. However, Multimodal Large Language Models (MLLMs) still struggle with some seemingly straightforward visual tasks, such as counting and solving jigsaw puzzles. We argue that these tasks challenge the ability of visual-to-textual conversion, where MLLMs convert visual information perceived from the input scene, to textual information for further reasoning and generating the answer. If the complexity of the visual input is beyond the perceptual capability of the MLLMs, without decomposing this conversion process, simply scaling inference-time reasoning cannot solve the task because it repeatedly encounters the same perceptual bottleneck. We propose an approach, autonomous imagination, to enable MLLMs to iteratively modify visual inputs (e.g. isolating objects, rearranging puzzle pieces) into intermediate visual states, decomposing visual-to-textual conversion into closed-loop visual modification steps. We show that, without any retraining, MLLMs can now solve tasks initially beyond their perceptual capability, highlighting that closed-loop visual modification can be an effective way of decomposing the visual reasoning task into solvable substeps. Our code and data are released at https://future-item.github.io/autoimagine-site/.

While Parameter-Efficient Fine-Tuning (PEFT) has substantially reduced the hardware cost of adapting Large Language Models (LLMs) by decreasing the number of trainable parameters, recent studies have sought to further improve PEFT through parameter sharing. However, these approaches either employ uniform parameter sharing across layers, which can delay convergence, or rely on dynamic masking strategies, which add computational overhead. The potential of sharing patterns inspired by the inherent hierarchical structure of Transformer architectures remains unexplored in PEFT. To address this gap, we introduce SAPE (Sandwich Adapters for Parameter Efficiency), a PEFT framework based on a sandwich-style hard weight-sharing topology. SAPE routes intermediate Transformer layers through balanced shared group adapters while strictly isolating the input embedding and final projection boundary transformations to prevent gradient interference. This design significantly reduces memory consumption while eliminating the computational overhead associated with dynamic parameter-sharing methods. Extensive evaluations across encoder-only and causal decoder architectures demonstrate that SAPE achieves state-of-the-art performance in low-parameter regimes. On natural language understanding, SAPE outperforms proPETL on RoBERTa-large while utilizing only 10% of the baseline's parameter budget. On natural language generation and world knowledge reasoning with LLaMA-3.2 (3B) under a strict ~0.6M parameter constraint, SAPE outperforms AdaLoRA, yielding absolute improvements of +4.85% on GSM8K and +3.11% on CommonsenseQA. Furthermore, through comprehensive topological ablations, we formalize an inherent capacity trade-off: while hard parameter sharing strongly regularizes semantic generalization, it slightly smooths the sharp layer-wise transformations required for rigid multi-step arithmetic reasoning.

Vision-language models (VLMs) are increasingly augmented with continuous or latent non-textual tokens intended to support "visual thinking." Despite improved task accuracy, this alone does not show that models actually use these tokens for reasoning -- gains may arise from confounds such as added context length, special-token anchoring, or training-time regularization. We formalize a diagnostic principle, Ablate-to-Validate, for testing whether latent-token content is genuinely utilized, and instantiate it as the Token Replacement Test (TRT), a standardized suite of content-replacement ablations. TRT holds the prompt, image, token budget, and decoding fixed while replacing intermediate tokens with zero, random, first-repeat, or oracle alternatives, isolating whether performance depends on token content or merely on token presence. As a controlled testbed, we study relative depth reasoning with LLaVA-13B and Qwen2.5-VL-3B, training models to predict and consume continuous or discrete depth spans across multiple frozen encoders (SigLIP2, CLIP, DINOv2) and token budgets. We additionally apply TRT to three off-the-shelf visual-thinking systems (Mirage, Mull-Tokens, CoVT) on BLINK, VSP, and CV-Bench. Across all settings, accuracy gains are a misleading proxy for latent-token reasoning: VLMs retain most improvement even when token content is corrupted or replaced, revealing a persistent gap between having a latent channel and using it as an information bottleneck. We recommend TRT as a standard diagnostic alongside accuracy for any method introducing continuous thought tokens.

The capability of LLM agents to function as the ``brain'' of a system fundamentally expands the scope of analysis beyond a standalone model. Consequently, safety is no longer only about input--output content alignment. It also concerns system behavior and real-world execution outcomes. However, the current literature is fragmented across attack types, applications, and benchmarks. This makes it hard to explain why failures such as prompt injection, tool misuse, and memory poisoning often share the same structural cause, and how they spread through an agent workflow. In this survey, we treat isolation as a first-class principle for LLM-agent system safety. By isolation, we refer to the separation of user inputs, tool access, execution channels, inter-agent communication, and environment-originated context. We organize the literature with a boundary-centric taxonomy of five boundaries: user-agent, agent-tool, agent-execution, agent-agent, and system-environment. This view helps identify where the loss of isolation first occurs, how compromise propagates across boundaries, and which defenses are most relevant at each interface. We also summarize cross-boundary failure paths, discuss open challenges, and outline a research agenda for isolation-by-construction in future agent systems.