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Nov 11

P2TPO: Structure-Aligned Page-to-Token Credit Assignment for Full-Page Document Parsing

End-to-end full-page document parsing must preserve the content and structure of heterogeneous elements, yet otherwise accurate outputs can contain local errors and omissions. A single page-level advantage does not explicitly identify which elements differ in quality across sampled outputs or where their errors occur. We introduce Page-to-Token Policy Optimization (P2TPO), a structure-aligned credit-assignment framework that operates on full-page policy trajectories. Reference-element alignment first associates block-level quality contrasts with generated spans. Unified Anchor Pricing (UAP) incorporates matched and missing element outcomes and provides feedback relative to a fixed quality ceiling when sampled outputs receive identical but imperfect scores for a reference element. Within matched blocks, Span Credit Redistribution (SCR) redistributes existing block credit according to aligned correct and erroneous spans, using boundary proxies for within-block omissions while preserving the total block-derived advantage across its tokens. Under a fixed-weight additive page utility, we show that element-indexed contrasts retain local quality differences that page-level aggregation can cancel out. In the main experimental comparison, P2TPO outperforms all evaluated policy optimization baselines in seed-averaged scores on each of the six document parsing benchmarks. Additional experiments demonstrate gains across model scales and initializations.

  • 6 authors
·
Oct 14

Explore to Evolve: Scaling Evolved Aggregation Logic via Proactive Online Exploration for Deep Research Agents

Deep research web agents not only retrieve information from diverse sources such as web environments, files, and multimodal inputs, but more importantly, they need to rigorously analyze and aggregate knowledge for insightful research. However, existing open-source deep research agents predominantly focus on enhancing information-seeking capabilities of web agents to locate specific information, while overlooking the essential need for information aggregation, which would limit their ability to support in-depth research. We propose an Explore to Evolve paradigm to scalably construct verifiable training data for web agents. Begins with proactive online exploration, an agent sources grounded information by exploring the real web. Using the collected evidence, the agent then self-evolves an aggregation program by selecting, composing, and refining operations from 12 high-level logical types to synthesize a verifiable QA pair. This evolution from high-level guidance to concrete operations allowed us to scalably produce WebAggregatorQA, a dataset of 10K samples across 50K websites and 11 domains. Based on an open-source agent framework, SmolAgents, we collect supervised fine-tuning trajectories to develop a series of foundation models, WebAggregator. WebAggregator-8B matches the performance of GPT-4.1, while the 32B variant surpasses GPT-4.1 by more than 10% on GAIA-text and closely approaches Claude-3.7-sonnet. Moreover, given the limited availability of benchmarks that evaluate web agents' information aggregation abilities, we construct a human-annotated evaluation split of WebAggregatorQA as a challenging test set. On this benchmark, Claude-3.7-sonnet only achieves 28%, and GPT-4.1 scores 25.8%. Even when agents manage to retrieve all references, they still struggle on WebAggregatorQA, highlighting the need to strengthen the information aggregation capabilities of web agent foundations.

  • 13 authors
·
Oct 16, 2025 2

BookRAG: A Hierarchical Structure-aware Index-based Approach for Retrieval-Augmented Generation on Complex Documents

As an effective method to boost the performance of Large Language Models (LLMs) on the question answering (QA) task, Retrieval-Augmented Generation (RAG), which queries highly relevant information from external complex documents, has attracted tremendous attention from both industry and academia. Existing RAG approaches often focus on general documents, and they overlook the fact that many real-world documents (such as books, booklets, handbooks, etc.) have a hierarchical structure, which organizes their content from different granularity levels, leading to poor performance for the QA task. To address these limitations, we introduce BookRAG, a novel RAG approach targeted for documents with a hierarchical structure, which exploits logical hierarchies and traces entity relations to query the highly relevant information. Specifically, we build a novel index structure, called BookIndex, by extracting a hierarchical tree from the document, which serves as the role of its table of contents, using a graph to capture the intricate relationships between entities, and mapping entities to tree nodes. Leveraging the BookIndex, we then propose an agent-based query method inspired by the Information Foraging Theory, which dynamically classifies queries and employs a tailored retrieval workflow. Extensive experiments on three widely adopted benchmarks demonstrate that BookRAG achieves state-of-the-art performance, significantly outperforming baselines in both retrieval recall and QA accuracy while maintaining competitive efficiency.

  • 3 authors
·
Dec 2, 2025

Deep Literature Survey Automation with an Iterative Workflow

Automatic literature survey generation has attracted increasing attention, yet most existing systems follow a one-shot paradigm, where a large set of papers is retrieved at once and a static outline is generated before drafting. This design often leads to noisy retrieval, fragmented structures, and context overload, ultimately limiting survey quality. Inspired by the iterative reading process of human researchers, we propose \ours, a framework based on recurrent outline generation, in which a planning agent incrementally retrieves, reads, and updates the outline to ensure both exploration and coherence. To provide faithful paper-level grounding, we design paper cards that distill each paper into its contributions, methods, and findings, and introduce a review-and-refine loop with visualization enhancement to improve textual flow and integrate multimodal elements such as figures and tables. Experiments on both established and emerging topics show that \ours\ substantially outperforms state-of-the-art baselines in content coverage, structural coherence, and citation quality, while producing more accessible and better-organized surveys. To provide a more reliable assessment of such improvements, we further introduce Survey-Arena, a pairwise benchmark that complements absolute scoring and more clearly positions machine-generated surveys relative to human-written ones. The code is available at https://github.com/HancCui/IterSurvey\_Autosurveyv2.

  • 9 authors
·
Oct 23, 2025

PAGE-RAG: Provenance-Aware Graph Evidence Promotion for Fixed-Budget Multi-hop Retrieval-Augmented Generation

Multi-hop question answering in retrieval-augmented gener?ation (RAG) often benefits from retrieving beyond the few candidates that will finally be read: narrow retrieval can miss an indispensable hop, while expanded retrieval introduces topical distractors. This challenge is not tied to a particu?lar knowledge-base format. Candidate pools may come from standalone retrievers, standard RAG backends, or graph-based retrieval pipelines. What is needed is a query-aware selection layer that can use relational structure to filter candidates be?fore generation. PAGE-RAG addresses this setting by using a graph as a temporary selection structure, rather than assum?ing a graph-structured knowledge base. It builds a query-local graph over retrieved candidates, records why candidates are connected, and treats each connection as a support hypothe?sis rather than support itself. We identify the resulting failure mode as a connectivity-support gap: connected candidates do not necessarily support the answer. We propose PAGE-RAG, a Provenance-Aware Graph Evidence promotion method that scores candidate paths with relevance, source-tracing meta?data, specificity, hubness, noise, and coherence signals, and applies minimal sufficient selection to promote supporting facts into a compact reader context. PAGE-RAG can serve as a complete retrieval-to-reading pipeline, and the same promo?tion stage can be inserted after existing retrieval or RAG sys?tems without replacing their upstream retrieval logic. Across three multi-hop QA benchmarks under the same final bud?get, PAGE-RAG improves support F1 and answer F1 by 10.4 and 3.3 points on a weighted average over a strong retriever. As a plug-in, PAGE-RAG further improves all reported RAG backends, including reasoning-oriented, compression-based, graph-based, and document/chunk-level systems.

  • 4 authors
·
Aug 29

DAPFAM: A Domain-Aware Family-level Dataset to benchmark cross domain patent retrieval

Patent prior-art retrieval becomes especially challenging when relevant disclosures cross technological boundaries. Existing benchmarks lack explicit domain partitions, making it difficult to assess how retrieval systems cope with such shifts. We introduce DAPFAM, a family-level benchmark with explicit IN-domain and OUT-domain partitions defined by a new IPC3 overlap scheme. The dataset contains 1,247 query families and 45,336 target families aggregated at the family level to reduce international redundancy, with citation based relevance judgments. We conduct 249 controlled experiments spanning lexical (BM25) and dense (transformer) backends, document and passage level retrieval, multiple query and document representations, aggregation strategies, and hybrid fusion via Reciprocal Rank Fusion (RRF). Results reveal a pronounced domain gap: OUT-domain performance remains roughly five times lower than IN-domain across all configurations. Passage-level retrieval consistently outperforms document-level, and dense methods provide modest gains over BM25, but none close the OUT-domain gap. Document-level RRF yields strong effectiveness efficiency trade-offs with minimal overhead. By exposing the persistent challenge of cross-domain retrieval, DAPFAM provides a reproducible, compute-aware testbed for developing more robust patent IR systems. The dataset is publicly available on huggingface at https://huggingface.co/datasets/datalyes/DAPFAM_patent.

  • 3 authors
·
Jun 27, 2025

SproutRAG: Attention-Guided Tree Search with Progressive Embeddings for Long-Document RAG

Retrieval-augmented generation (RAG) systems must balance retrieval granularity with contextual coherence, a challenge that existing methods address through LLM-guided chunking, single-level context expansion, or hierarchical summarization. These approaches variously depend on costly LLM calls during indexing or retrieval, limit context aggregation to a single granularity level, or introduce information loss through summarization. We present SproutRAG, an attention-guided hierarchical RAG framework that addresses this trade-off by organizing sentence-level chunks into progressively larger but semantically coherent units, using learned inter-sentence attention to construct a binary chunking tree. Unlike prior approaches that rely on external LLMs, fixed context expansion, or lossy summarization, SproutRAG learns which attention heads and layers best capture semantic document structure, enabling multi-granularity retrieval without additional LLM calls or compressed summaries. At retrieval time, SproutRAG uses hierarchical beam search to retrieve candidates at multiple granularities, capturing multi-sentence relevance beyond flat retrieval. The framework is trained end-to-end with a joint objective that improves both embeddings and tree structure. Experiments across four benchmarks spanning scientific, legal, and open-domain settings demonstrate that SproutRAG improves information efficiency (IE) by 6.1% on average over the strongest baseline. Code is available on https://github.com/AmirAbaskohi/SproutRAG.

DocSplit: A Comprehensive Benchmark Dataset and Evaluation Approach for Document Packet Recognition and Splitting

Document understanding in real-world applications often requires processing heterogeneous, multi-page document packets containing multiple documents stitched together. Despite recent advances in visual document understanding, the fundamental task of document packet splitting, which involves separating a document packet into individual units, remains largely unaddressed. We present the first comprehensive benchmark dataset, DocSplit, along with novel evaluation metrics for assessing the document packet splitting capabilities of large language models. DocSplit comprises five datasets of varying complexity, covering diverse document types, layouts, and multimodal settings. We formalize the DocSplit task, which requires models to identify document boundaries, classify document types, and maintain correct page ordering within a document packet. The benchmark addresses real-world challenges, including out-of-order pages, interleaved documents, and documents lacking clear demarcations. We conduct extensive experiments evaluating multimodal LLMs on our datasets, revealing significant performance gaps in current models' ability to handle complex document splitting tasks. The DocSplit benchmark datasets and proposed novel evaluation metrics provide a systematic framework for advancing document understanding capabilities essential for legal, financial, healthcare, and other document-intensive domains. We release the datasets to facilitate future research in document packet processing.

  • 9 authors
·
Feb 17

Thesis: Document Summarization with applications to Keyword extraction and Image Retrieval

Automatic summarization is the process of reducing a text document in order to generate a summary that retains the most important points of the original document. In this work, we study two problems - i) summarizing a text document as set of keywords/caption, for image recommedation, ii) generating opinion summary which good mix of relevancy and sentiment with the text document. Intially, we present our work on an recommending images for enhancing a substantial amount of existing plain text news articles. We use probabilistic models and word similarity heuristics to generate captions and extract Key-phrases which are re-ranked using a rank aggregation framework with relevance feedback mechanism. We show that such rank aggregation and relevant feedback which are typically used in Tagging Documents, Text Information Retrieval also helps in improving image retrieval. These queries are fed to the Yahoo Search Engine to obtain relevant images 1. Our proposed method is observed to perform better than all existing baselines. Additonally, We propose a set of submodular functions for opinion summarization. Opinion summarization has built in it the tasks of summarization and sentiment detection. However, it is not easy to detect sentiment and simultaneously extract summary. The two tasks conflict in the sense that the demand of compression may drop sentiment bearing sentences, and the demand of sentiment detection may bring in redundant sentences. However, using submodularity we show how to strike a balance between the two requirements. Our functions generate summaries such that there is good correlation between document sentiment and summary sentiment along with good ROUGE score. We also compare the performances of the proposed submodular functions.

  • 1 authors
·
May 20, 2024

Scalable Disk-Based Approximate Nearest Neighbor Search with Page-Aligned Graph

Approximate Nearest Neighbor Search (ANNS), as the core of vector databases (VectorDBs), has become widely used in modern AI and ML systems, powering applications from information retrieval to bio-informatics. While graph-based ANNS methods achieve high query efficiency, their scalability is constrained by the available host memory. Recent disk-based ANNS approaches mitigate memory usage by offloading data to Solid-State Drives (SSDs). However, they still suffer from issues such as long I/O traversal path, misalignment with storage I/O granularity, and high in-memory indexing overhead, leading to significant I/O latency and ultimately limiting scalability for large-scale vector search. In this paper, we propose PageANN, a disk-based approximate nearest neighbor search (ANNS) framework designed for high performance and scalability. PageANN introduces a page-node graph structure that aligns logical graph nodes with physical SSD pages, thereby shortening I/O traversal paths and reducing I/O operations. Specifically, similar vectors are clustered into page nodes, and a co-designed disk data layout leverages this structure with a merging technique to store only representative vectors and topology information, avoiding unnecessary reads. To further improve efficiency, we design a memory management strategy that combines lightweight indexing with coordinated memory-disk data allocation, maximizing host memory utilization while minimizing query latency and storage overhead. Experimental results show that PageANN significantly outperforms state-of-the-art (SOTA) disk-based ANNS methods, achieving 1.85x-10.83x higher throughput and 51.7%-91.9% lower latency across different datasets and memory budgets, while maintaining comparable high recall accuracy.

  • 5 authors
·
Sep 29, 2025

Science Hierarchography: Hierarchical Organization of Science Literature

Scientific knowledge is growing rapidly, making it challenging to track progress and high-level conceptual links across broad disciplines. While existing tools like citation networks and search engines make it easy to access a few related papers, they fundamentally lack the flexible abstraction needed to represent the density of activity in various scientific subfields. We motivate SCIENCE HIERARCHOGRAPHY, the goal of organizing scientific literature into a high-quality hierarchical structure that allows for the categorization of scientific work across varying levels of abstraction, from very broad fields to very specific studies. Such a representation can provide insights into which fields are well-explored and which are under-explored. To achieve the goals of SCIENCE HIERARCHOGRAPHY, we develop a range of algorithms. Our primary approach combines fast embedding-based clustering with LLM-based prompting to balance the computational efficiency of embedding methods with the semantic precision offered by LLM prompting. We demonstrate that this approach offers the best trade-off between quality and speed compared to methods that heavily rely on LLM prompting, such as iterative tree construction with LLMs. To better reflect the interdisciplinary and multifaceted nature of research papers, our hierarchy captures multiple dimensions of categorization beyond simple topic labels. We evaluate the utility of our framework by assessing how effectively an LLM-based agent can locate target papers using the hierarchy. Results show that this structured approach enhances interpretability, supports trend discovery, and offers an alternative pathway for exploring scientific literature beyond traditional search methods. Code, data and demo: https://github.com/JHU-CLSP/science-hierarchography{https://github.com/JHU-CLSP/science-hierarchography}

  • 4 authors
·
Apr 18, 2025

Paging with Succinct Predictions

Paging is a prototypical problem in the area of online algorithms. It has also played a central role in the development of learning-augmented algorithms -- a recent line of research that aims to ameliorate the shortcomings of classical worst-case analysis by giving algorithms access to predictions. Such predictions can typically be generated using a machine learning approach, but they are inherently imperfect. Previous work on learning-augmented paging has investigated predictions on (i) when the current page will be requested again (reoccurrence predictions), (ii) the current state of the cache in an optimal algorithm (state predictions), (iii) all requests until the current page gets requested again, and (iv) the relative order in which pages are requested. We study learning-augmented paging from the new perspective of requiring the least possible amount of predicted information. More specifically, the predictions obtained alongside each page request are limited to one bit only. We consider two natural such setups: (i) discard predictions, in which the predicted bit denotes whether or not it is ``safe'' to evict this page, and (ii) phase predictions, where the bit denotes whether the current page will be requested in the next phase (for an appropriate partitioning of the input into phases). We develop algorithms for each of the two setups that satisfy all three desirable properties of learning-augmented algorithms -- that is, they are consistent, robust and smooth -- despite being limited to a one-bit prediction per request. We also present lower bounds establishing that our algorithms are essentially best possible.

  • 8 authors
·
Oct 6, 2022

BM25 Wins at Scale: A Scaling Study of Retrieval-Augmented Generation Paradigms

Retrieval-augmented generation (RAG) spans lexical and dense retrieval, graph-based indexing, and agentic search, but these paradigms are usually evaluated on different benchmarks at one corpus size, leaving their accuracy-cost scaling unclear. To bridge this gap, we present a controlled study that varies corpus size along 28 strictly nested tiers spanning roughly 450-fold, while holding questions and a fixed bedrock of relevant and adversarial documents unchanged. Under one reader model and one judging protocol, we measure official accuracy, construction and query tokens, and latency. The results reveal a scale-dependent crossover rather than an unconditional winner. File-System Agent leads at the smallest shared tiers, but its sequential exploration costs 39 times more query tokens at the bedrock and becomes less effective as the search space grows. Around 10 million corpus tokens, BM25 overtakes it and leads at every larger shared tier, with a margin approaching 20 points at full scale. BM25 also anchors the low-cost end of the Pareto frontier without LLM-based construction. Dense retrieval remains efficient but less accurate, whereas graph-based RAG encounters construction walls before deployment scale and its scalable variants remain below BM25 at shared tiers. Overall, corpus growth increasingly favors global candidate ranking: lexical retrieval is the strongest scalable default, while agentic reasoning works best after ranked discovery rather than in place of it.

muset-ai muset.ai
·
Jul 29 4

Navigating Through Paper Flood: Advancing LLM-based Paper Evaluation through Domain-Aware Retrieval and Latent Reasoning

With the rapid and continuous increase in academic publications, identifying high-quality research has become an increasingly pressing challenge. While recent methods leveraging Large Language Models (LLMs) for automated paper evaluation have shown great promise, they are often constrained by outdated domain knowledge and limited reasoning capabilities. In this work, we present PaperEval, a novel LLM-based framework for automated paper evaluation that addresses these limitations through two key components: 1) a domain-aware paper retrieval module that retrieves relevant concurrent work to support contextualized assessments of novelty and contributions, and 2) a latent reasoning mechanism that enables deep understanding of complex motivations and methodologies, along with comprehensive comparison against concurrently related work, to support more accurate and reliable evaluation. To guide the reasoning process, we introduce a progressive ranking optimization strategy that encourages the LLM to iteratively refine its predictions with an emphasis on relative comparison. Experiments on two datasets demonstrate that PaperEval consistently outperforms existing methods in both academic impact and paper quality evaluation. In addition, we deploy PaperEval in a real-world paper recommendation system for filtering high-quality papers, which has gained strong engagement on social media -- amassing over 8,000 subscribers and attracting over 10,000 views for many filtered high-quality papers -- demonstrating the practical effectiveness of PaperEval.

  • 6 authors
·
Aug 7, 2025

Enhanced Whole Page Optimization via Mixed-Grained Reward Mechanism-Adapted Language Models

Optimizing the presentation of search and recommendation results is crucial to enhancing user experience and engagement. Whole Page Optimization (WPO) plays a pivotal role in this process, as it directly influences how information is surfaced to users. While Pre-trained Large Language Models (LLMs) have demonstrated remarkable capabilities in generating coherent and contextually relevant content, fine-tuning these models for complex tasks like WPO presents challenges. Specifically, the need for extensive human-annotated data to mitigate issues such as hallucinations and model instability can be prohibitively expensive, especially in large-scale systems that interact with millions of items daily. In this work, we address the challenge of fine-tuning LLMs for WPO by using user feedback as the supervision. Unlike manually labeled datasets, user feedback is inherently noisy and less precise. To overcome this, we propose a reward-based fine-tuning approach, PageLLM, which employs a mixed-grained reward mechanism that combines page-level and item-level rewards. The page-level reward evaluates the overall quality and coherence, while the item-level reward focuses on the accuracy and relevance of key recommendations. This dual-reward structure ensures that both the holistic presentation and the critical individual components are optimized. We validate PageLLM on both public and industrial datasets. PageLLM outperforms baselines and achieves a 0.44\% GMV increase in an online A/B test with over 10 million users, demonstrating its real-world impact.

  • 3 authors
·
Jun 10, 2025

TopoGraphRAG-Bench: Evaluating Multimodal GraphRAG on Layout-Grounded Evidence Reasoning

Real-world documents distribute evidence across text, tables, figures, and captions within complex page layouts. Answering complex questions over such documents therefore requires more than retrieving relevant passages: systems must recover the evidence topology that connects heterogeneous evidence units. Existing GraphRAG evaluations remain largely text-centered, while multimodal document RAG benchmarks assess cross-modal retrieval and generation without directly evaluating recovery of the intended evidence topology. We introduce TOPOGRAPHRAG-BENCH, a layout-grounded benchmark for multimodal evidence reasoning in GraphRAG, comprising 2,024 questions over 201 long, visually rich documents. Questions are constructed bottom-up from text, figure, and table evidence units under three controlled topologies: single-hop retrieval, bridge-chain reasoning, and multi-source synthesis. To ensure that questions preserve their intended structure, we apply counterfactual validation for shortcut resistance, modality necessity, and evidence necessity. We evaluate text-only GraphRAG, page-level visual retrieval, and multimodal GraphRAG systems using retrieval, generation, and topology-aware reasoning metrics. Multimodal GraphRAG systems achieve the strongest overall performance, but still fail when visual-textual evidence alignment or multi-unit composition is incomplete. Text-only GraphRAG struggles when key dependencies are grounded in figures or tables, while page-level visual retrieval lacks the fine-grained structure needed for topology recovery. These findings motivate GraphRAG systems that move beyond text-derived entity relation graphs to explicitly model document layouts, cross-modal evidence alignment, and the reasoning roles of evidence units. Code and data are available at https://richardlrc.github.io/TopoGraphRAG-Bench/.

  • 7 authors
·
Oct 6

VisDocAgentBench: Benchmarking Agents for Visually Rich Document Retrieval

Visually rich documents encode relevance through language, layout, structured visual elements, and corpus context, yet retrieval is typically evaluated by one-shot query--page matching. Agentic-search benchmarks usually score downstream question answering or report generation, leaving document ranking under iterative evidence acquisition underexplored. We introduce VisDocAgentBench, a closed-corpus benchmark comparing static and agentic retrieval under a shared ranked-output contract. It contains 2,375 pages from 100 documents and 120 unique-target queries balanced across direct, one-bridge, and two-bridge evidence structures. Relation-preserving construction yields semantic, relational, and visual queries, followed by full-document review and hard-negative validation. A strong late-interaction visual retriever reaches 97.50% Recall@1 on direct items but 2.50% on two-bridge items, exposing the limits of query--target matching when relevance depends on corpus context. Agents recover much of this loss, but planner choice and retrieval representation remain decisive. Every planner performs better with visual retrieval, whose best R@1 reaches 67.50% versus 37.50% for OCR-text. Ablations identify iterative search and page inspection as consequential capabilities, and providing the complete support context improves ranking on both routes. Trace analysis localizes the remaining losses to target discovery, candidate examination, and evidence-role integration. These findings motivate retrieval agents that combine modality-preserving discovery with evidence-directed verification.

  • 8 authors
·
Aug 18

MinerU-Popo: Universal Post-Processing Model for Structured Document Parsing

VLM-based OCR models have become the de facto choice for document parsing, as they can accurately extract page-level elements (e.g., paragraphs within individual pages) together with their bounding boxes and textual content. However, downstream applications such as RAG require coherent document-level information, whereas these models often break cross-page continuity and fail to recover disrupted structures, such as paragraphs and tables truncated by page boundaries. Such relationships are not confined to a single page; instead, they require joint analysis of titles, paragraphs, tables, and images spanning multiple pages. A natural solution is therefore to reuse existing OCR outputs and reconstruct document-level logical structures through post-processing. To this end, we propose MinerU-Popo, a lightweight and universal framework for POst-Processing OCR outputs, which converts page-level results from diverse parsers into coherent document-level structures. MinerU-Popo decomposes the problem into four focused subtasks: text truncation recovery, table truncation recovery, title hierarchy reconstruction, and image-text association. To address these effectively, we build a task-oriented data engine with task-specific input filtering, and use the generated data (30K) to fine-tune a lightweight post-processing model (Qwen3-VL-4B). To support long documents, we introduce dynamic chunking with overlap-based synchronization, which aligns chunk-level outputs from the fine-tuned model and preserves global consistency. Finally, we assemble the aligned outputs into a tree-structured document representation, further enriched with node chunking and summaries for downstream retrieval and analysis. Empirical results show MinerU-Popo improves title-hierarchy TEDS by at least 20% across all five tested OCR models, improves RAG accuracy and reduces per-query latency.

  • 11 authors
·
May 23

MoLoRAG: Bootstrapping Document Understanding via Multi-modal Logic-aware Retrieval

Document Understanding is a foundational AI capability with broad applications, and Document Question Answering (DocQA) is a key evaluation task. Traditional methods convert the document into text for processing by Large Language Models (LLMs), but this process strips away critical multi-modal information like figures. While Large Vision-Language Models (LVLMs) address this limitation, their constrained input size makes multi-page document comprehension infeasible. Retrieval-augmented generation (RAG) methods mitigate this by selecting relevant pages, but they rely solely on semantic relevance, ignoring logical connections between pages and the query, which is essential for reasoning. To this end, we propose MoLoRAG, a logic-aware retrieval framework for multi-modal, multi-page document understanding. By constructing a page graph that captures contextual relationships between pages, a lightweight VLM performs graph traversal to retrieve relevant pages, including those with logical connections often overlooked. This approach combines semantic and logical relevance to deliver more accurate retrieval. After retrieval, the top-K pages are fed into arbitrary LVLMs for question answering. To enhance flexibility, MoLoRAG offers two variants: a training-free solution for easy deployment and a fine-tuned version to improve logical relevance checking. Experiments on four DocQA datasets demonstrate average improvements of 9.68% in accuracy over LVLM direct inference and 7.44% in retrieval precision over baselines. Codes and datasets are released at https://github.com/WxxShirley/MoLoRAG.

  • 5 authors
·
Sep 5, 2025

MoDora: Tree-Based Semi-Structured Document Analysis System

Semi-structured documents integrate diverse interleaved data elements (e.g., tables, charts, hierarchical paragraphs) arranged in various and often irregular layouts. These documents are widely observed across domains and account for a large portion of real-world data. However, existing methods struggle to support natural language question answering over these documents due to three main technical challenges: (1) The elements extracted by techniques like OCR are often fragmented and stripped of their original semantic context, making them inadequate for analysis. (2) Existing approaches lack effective representations to capture hierarchical structures within documents (e.g., associating tables with nested chapter titles) and to preserve layout-specific distinctions (e.g., differentiating sidebars from main content). (3) Answering questions often requires retrieving and aligning relevant information scattered across multiple regions or pages, such as linking a descriptive paragraph to table cells located elsewhere in the document. To address these issues, we propose MoDora, an LLM-powered system for semi-structured document analysis. First, we adopt a local-alignment aggregation strategy to convert OCR-parsed elements into layout-aware components, and conduct type-specific information extraction for components with hierarchical titles or non-text elements. Second, we design the Component-Correlation Tree (CCTree) to hierarchically organize components, explicitly modeling inter-component relations and layout distinctions through a bottom-up cascade summarization process. Finally, we propose a question-type-aware retrieval strategy that supports (1) layout-based grid partitioning for location-based retrieval and (2) LLM-guided pruning for semantic-based retrieval. Experiments show MoDora outperforms baselines by 5.97%-61.07% in accuracy. The code is at https://github.com/weAIDB/MoDora.

  • 11 authors
·
Feb 26 1

A Systematic Investigation of Document Chunking Strategies and Embedding Sensitivity

We present the first large-scale, cross-domain evaluation of document chunking strategies for dense retrieval, addressing a critical but underexplored aspect of retrieval-augmented systems. In our study, 36 segmentation methods spanning fixed-size, semantic, structure-aware, hierarchical, adaptive, and LLM-assisted approaches are benchmarked across six diverse knowledge domains using five different embedding models. Retrieval performance is assessed using graded relevance scores from a state-of-the-art LLM evaluator, with Normalised DCG@5 as the primary metric (complemented by Hit@5 and MRR). Our experiments show that content-aware chunking significantly improves retrieval effectiveness over naive fixed-length splitting. The top-performing strategy, Paragraph Group Chunking, achieved the highest overall accuracy (mean nDCG@5~0.459) and substantially better top-rank hit rates (Precision@1~24%, Hit@5~59%). In contrast, simple fixed-size character chunking as baselines performed poorly (nDCG@5 < 0.244, Precision@1~2-3%). We observe pronounced domain-specific differences: dynamic token sizing is strongest in biology, physics and health, while paragraph grouping is strongest in legal and maths. Larger embedding models yield higher absolute scores but remain sensitive to suboptimal segmentation, indicating that better chunking and large embeddings provide complementary benefits. In addition to accuracy gains, we quantify the efficiency trade-offs of advanced chunking. Producing more, smaller chunks can increase index size and latency. Consequently, we identify methods (like dynamic chunking) that approach an optimal balance of effectiveness and efficiency. These findings establish chunking as a vital lever for improving retrieval performance and reliability.

  • 3 authors
·
Mar 6

Structure and Diversity Aware Context Bubble Construction for Enterprise Retrieval Augmented Systems

Large language model (LLM) contexts are typically constructed using retrieval-augmented generation (RAG), which involves ranking and selecting the top-k passages. The approach causes fragmentation in information graphs in document structures, over-retrieval, and duplication of content alongside insufficient query context, including 2nd and 3rd order facets. In this paper, a structure-informed and diversity-constrained context bubble construction framework is proposed that assembles coherent, citable bundles of spans under a strict token budget. The method preserves and exploits inherent document structure by organising multi-granular spans (e.g., sections and rows) and using task-conditioned structural priors to guide retrieval. Starting from high-relevance anchor spans, a context bubble is constructed through constrained selection that balances query relevance, marginal coverage, and redundancy penalties. It will explicitly constrain diversity and budget, producing compact and informative context sets, unlike top-k retrieval. Moreover, a full retrieval is emitted that traces the scoring and selection choices of the records, thus providing auditability and deterministic tuning. Experiments on enterprise documents demonstrate the efficiency of context bubble as it significantly reduces redundant context, is better able to cover secondary facets and has a better answer quality and citation faithfulness within a limited context window. Ablation studies demonstrate that both structural priors as well as diversity constraint selection are necessary; removing either component results in a decline in coverage and an increase in redundant or incomplete context.

  • 2 authors
·
Jan 15

μgat: Improving Single-Page Document Parsing by Providing Multi-Page Context

Regesta are catalogs of summaries of other documents and, in some cases, are the only source of information about the content of such full-length documents. For this reason, they are of great interest to scholars in many social and humanities fields. In this work, we focus on Regesta Pontificum Romanum, a large collection of papal registers. Regesta are visually rich documents, where the layout is as important as the text content to convey the contained information through the structure, and are inherently multi-page documents. Among Digital Humanities techniques that can help scholars efficiently exploit regesta and other documental sources in the form of scanned documents, Document Parsing has emerged as a task to process document images and convert them into machine-readable structured representations, usually markup language. However, current models focus on scientific and business documents, and most of them consider only single-paged documents. To overcome this limitation, in this work, we propose {\mu}gat, an extension of the recently proposed Document parsing Nougat architecture, which can handle elements spanning over the single page limits. Specifically, we adapt Nougat to process a larger, multi-page context, consisting of the previous and the following page, while parsing the current page. Experimental results, both qualitative and quantitative, demonstrate the effectiveness of our proposed approach also in the case of the challenging Regesta Pontificum Romanorum.

  • 5 authors
·
Aug 28, 2024

Octen-WebGR: Scaling Generative Retrieval to 200 Million Web Pages

Navigational search aims to find a single target page among hundreds of millions of web pages. Click tables work well for queries seen before but cannot generalise to new formulations, while embedding retrievers generalise across content but often rank navigational targets poorly. We introduce Octen-WebGR, a generative retrieval framework that stores web pages in the parameters of a language model: given a query, the model generates a two-token semantic identifier constrained to a table of real URLs. We develop Octen-WebGR-4B, which indexes 201 million web pages, and evaluate it on real navigational traffic from the month after training. Generative retrieval is most effective on new ways of asking for familiar pages: for unseen queries targeting pages with substantial interaction history, it ranks the correct page first 30.9% of the time, against 17.2% for a dense retriever trained on the same clicks (21.4% with a click prior). Embedding retrieval keeps an advantage on rarely visited pages, so the two approaches generalise on complementary sides, the query and the page. Over all navigational traffic, Octen-WebGR reaches 59.6% top-1 accuracy, against 46.5% for a click-enhanced dense retriever and up to 37.5% for frontier LLMs answering from memory, which cost at least 40 times as much per query. The 4B model runs on a single GPU with 10 GB of memory, compared with 412 GB for exact dense retrieval. Scaling experiments with up to 32 million URLs show that, when every query-page pair is seen equally often, the model size needed grows sublinearly with index size, and that retrieval is constrained more by page exposure than by model capacity. We release Octen-WebGR-4B and Octen-WebGR-0.6B with their identifier tables and inference code.

  • 6 authors
·
Oct 25

Adaptive Chunking: Optimizing Chunking-Method Selection for RAG

The effectiveness of Retrieval-Augmented Generation (RAG) is highly dependent on how documents are chunked, that is, segmented into smaller units for indexing and retrieval. Yet, commonly used "one-size-fits-all" approaches often fail to capture the nuanced structure and semantics of diverse texts. Despite its central role, chunking lacks a dedicated evaluation framework, making it difficult to assess and compare strategies independently of downstream performance. We challenge this paradigm by introducing Adaptive Chunking, a framework that selects the most suitable chunking strategy for each document based on a set of five novel intrinsic, document-based metrics: References Completeness (RC), Intrachunk Cohesion (ICC), Document Contextual Coherence (DCC), Block Integrity (BI), and Size Compliance (SC), which directly assess chunking quality across key dimensions. To support this framework, we also introduce two new chunkers, an LLM-regex splitter and a split-then-merge recursive splitter, alongside targeted post-processing techniques. On a diverse corpus spanning legal, technical, and social science domains, our metric-guided adaptive method significantly improves downstream RAG performance. Without changing models or prompts, our framework increases RAG outcomes, raising answers correctness to 72% (from 62-64%) and increasing the number of successfully answered questions by over 30% (65 vs. 49). These results demonstrate that adaptive, document-aware chunking, guided by a complementary suite of intrinsic metrics, offers a practical and effective path to more robust RAG systems. Code available at https://github.com/ekimetrics/adaptive-chunking.

Ekimetrics Ekimetrics
·
Mar 25

Document Retrieval-Aware Chunking (D-RAC): Universal Retrieval-Aware Ingestion of Enterprise Documents via PDF Normalization and Multimodal Markdown Conversion

Retrieval-Augmented Generation (RAG) systems over enterprise knowledge bases must ingest heterogeneous document formats -- PDFs, Word documents, presentations, and scans -- whose content is locked inside complex visual layouts, multi-column pages, and dense tables. Rule-based extraction and OCR destroy reading order, flatten tables, and lose heading hierarchy, while fully agentic chunking over extracted text incurs high token costs and hallucination risk. We present Document Retrieval-Aware Chunking (D-RAC), an extension of our Web Retrieval-Aware Chunking (W-RAC) framework to arbitrary document formats. D-RAC first normalizes any input document into PDF, exploiting the fact that virtually every format has a faithful, deterministic PDF rendering. A single multimodal LLM pass then converts rendered pages into retrieval-optimized Markdown -- rewriting tables as self-contained prose statements and preserving heading hierarchy -- after which chunking proceeds exactly as in W-RAC: deterministic parsing into ID-addressable units followed by lightweight LLM-based chunk planning over identifiers rather than text. Source text is never regenerated during chunking, preserving W-RAC's cost, determinism, and observability benefits while unlocking every renderable format as a first-class input. On the 236-document, 795-page PDF subset of the RAG-Multi-Corpus benchmark spanning five enterprise domains, D-RAC converts and chunks the entire corpus in 72 minutes with zero errors, producing 1,748 retrieval-ready chunks. Compared to agentic chunking with frontier LLMs, D-RAC reduces chunking-stage output tokens by 95.7%, cutting chunking cost by 77.8% (GPT-4.1 pricing) to 85.6% (Gemini 2.5 Pro pricing) and chunking time by 75%. D-RAC scales linearly to documents of 500+ pages.

Yellow-AI-NLP Yellow.ai
·
Sep 20 4

Structural Text Segmentation of Legal Documents

The growing complexity of legal cases has lead to an increasing interest in legal information retrieval systems that can effectively satisfy user-specific information needs. However, such downstream systems typically require documents to be properly formatted and segmented, which is often done with relatively simple pre-processing steps, disregarding topical coherence of segments. Systems generally rely on representations of individual sentences or paragraphs, which may lack crucial context, or document-level representations, which are too long for meaningful search results. To address this issue, we propose a segmentation system that can predict topical coherence of sequential text segments spanning several paragraphs, effectively segmenting a document and providing a more balanced representation for downstream applications. We build our model on top of popular transformer networks and formulate structural text segmentation as topical change detection, by performing a series of independent classifications that allow for efficient fine-tuning on task-specific data. We crawl a novel dataset consisting of roughly 74,000 online Terms-of-Service documents, including hierarchical topic annotations, which we use for training. Results show that our proposed system significantly outperforms baselines, and adapts well to structural peculiarities of legal documents. We release both data and trained models to the research community for future work.https://github.com/dennlinger/TopicalChange

  • 4 authors
·
Dec 7, 2020

Towards Global Retrieval Augmented Generation: A Benchmark for Corpus-Level Reasoning

Retrieval-augmented generation (RAG) has emerged as a leading approach to reducing hallucinations in large language models (LLMs). Current RAG evaluation benchmarks primarily focus on what we call local RAG: retrieving relevant chunks from a small subset of documents to answer queries that require only localized understanding within specific text chunks. However, many real-world applications require a fundamentally different capability -- global RAG -- which involves aggregating and analyzing information across entire document collections to derive corpus-level insights (for example, "What are the top 10 most cited papers in 2023?"). In this paper, we introduce GlobalQA -- the first benchmark specifically designed to evaluate global RAG capabilities, covering four core task types: counting, extremum queries, sorting, and top-k extraction. Through systematic evaluation across different models and baselines, we find that existing RAG methods perform poorly on global tasks, with the strongest baseline achieving only 1.51 F1 score. To address these challenges, we propose GlobalRAG, a multi-tool collaborative framework that preserves structural coherence through chunk-level retrieval, incorporates LLM-driven intelligent filters to eliminate noisy documents, and integrates aggregation modules for precise symbolic computation. On the Qwen2.5-14B model, GlobalRAG achieves 6.63 F1 compared to the strongest baseline's 1.51 F1, validating the effectiveness of our method.

  • 5 authors
·
Oct 30, 2025

MAGE-RAG: Multigranular Adaptive Graph Evidence for Agentic Multimodal RAG in Long-Document QA

Long-document multimodal question answering requires a system to locate sparse evidence in long PDFs and integrate clues from text, tables, images, charts, and complex layouts. Existing RAG methods mostly rely on fixed Top-k retrieval over text chunks or pages. Text retrieval can compress the context but often loses visual and layout information; page-level visual retrieval preserves the original page, yet it also sends large irrelevant regions to the reader, leading to a static trade-off among evidence coverage, noise, and inference cost. This paper proposes MAGE-RAG, a multigranular adaptive graph evidence framework for long-document multimodal QA. MAGE-RAG uses page retrieval as the entry point for query-time evidence construction. Offline, it builds an evidence graph with page nodes and element nodes, encoding containment, reading order, layout adjacency, section hierarchy, and semantic-neighbor relations. At query time, an online evidence controller iteratively activates, opens, searches, and prunes evidence under explicit budgets. The resulting evidence subgraph is then rendered into structured multimodal reader input, allowing the LVLM to consume compact and relevant evidence within a limited context. On LongDocURL and MMLongBench-Doc, we establish a unified comparison and analysis protocol covering Direct MLLM, Text RAG, Page-level Visual RAG, and Graph/Agentic RAG. Experiments show that MAGE-RAG achieves 52.75 overall accuracy on LongDocURL, and 53.26 accuracy with 51.19 F1 on MMLongBench-Doc. Fine-grained breakdowns, budget-performance curves, ablations, and trace-based analysis further show that query-time evidence subgraph construction can balance dispersed evidence coverage with context-noise control. Our code is available at https://github.com/laonuo2004/MAGE-RAG.git.

  • 6 authors
·
Jun 13

Holistic Reasoning with Long-Context LMs: A Benchmark for Database Operations on Massive Textual Data

The rapid increase in textual information means we need more efficient methods to sift through, organize, and understand it all. While retrieval-augmented generation (RAG) models excel in accessing information from large document collections, they struggle with complex tasks that require aggregation and reasoning over information spanning across multiple documents--what we call holistic reasoning. Long-context language models (LCLMs) have great potential for managing large-scale documents, but their holistic reasoning capabilities remain unclear. In this work, we introduce HoloBench, a novel framework that brings database reasoning operations into text-based contexts, making it easier to systematically evaluate how LCLMs handle holistic reasoning across large documents. Our approach adjusts key factors such as context length, information density, distribution of information, and query complexity to evaluate LCLMs comprehensively. Our experiments show that the amount of information in the context has a bigger influence on LCLM performance than the actual context length. Furthermore, the complexity of queries affects performance more than the amount of information, particularly for different types of queries. Interestingly, queries that involve finding maximum or minimum values are easier for LCLMs and are less affected by context length, even though they pose challenges for RAG systems. However, tasks requiring the aggregation of multiple pieces of information show a noticeable drop in accuracy as context length increases. Additionally, we find that while grouping relevant information generally improves performance, the optimal positioning varies across models. Our findings surface both the advancements and the ongoing challenges in achieving a holistic understanding of long contexts.

  • 3 authors
·
Oct 15, 2024

UniHDSA: A Unified Relation Prediction Approach for Hierarchical Document Structure Analysis

Document structure analysis, aka document layout analysis, is crucial for understanding both the physical layout and logical structure of documents, serving information retrieval, document summarization, knowledge extraction, etc. Hierarchical Document Structure Analysis (HDSA) specifically aims to restore the hierarchical structure of documents created using authoring software with hierarchical schemas. Previous research has primarily followed two approaches: one focuses on tackling specific subtasks of HDSA in isolation, such as table detection or reading order prediction, while the other adopts a unified framework that uses multiple branches or modules, each designed to address a distinct task. In this work, we propose a unified relation prediction approach for HDSA, called UniHDSA, which treats various HDSA sub-tasks as relation prediction problems and consolidates relation prediction labels into a unified label space. This allows a single relation prediction module to handle multiple tasks simultaneously, whether at a page-level or document-level structure analysis. To validate the effectiveness of UniHDSA, we develop a multimodal end-to-end system based on Transformer architectures. Extensive experimental results demonstrate that our approach achieves state-of-the-art performance on a hierarchical document structure analysis benchmark, Comp-HRDoc, and competitive results on a large-scale document layout analysis dataset, DocLayNet, effectively illustrating the superiority of our method across all sub-tasks. The Comp-HRDoc benchmark and UniHDSA's configurations are publicly available at https://github.com/microsoft/CompHRDoc.

  • 3 authors
·
Mar 20, 2025 2

BooookScore: A systematic exploration of book-length summarization in the era of LLMs

Summarizing book-length documents (>100K tokens) that exceed the context window size of large language models (LLMs) requires first breaking the input document into smaller chunks and then prompting an LLM to merge, update, and compress chunk-level summaries. Despite the complexity and importance of this task, it has yet to be meaningfully studied due to the challenges of evaluation: existing book-length summarization datasets (e.g., BookSum) are in the pretraining data of most public LLMs, and existing evaluation methods struggle to capture errors made by modern LLM summarizers. In this paper, we present the first study of the coherence of LLM-based book-length summarizers implemented via two prompting workflows: (1) hierarchically merging chunk-level summaries, and (2) incrementally updating a running summary. We obtain 1193 fine-grained human annotations on GPT-4 generated summaries of 100 recently-published books and identify eight common types of coherence errors made by LLMs. Because human evaluation is expensive and time-consuming, we develop an automatic metric, BooookScore, that measures the proportion of sentences in a summary that do not contain any of the identified error types. BooookScore has high agreement with human annotations and allows us to systematically evaluate the impact of many other critical parameters (e.g., chunk size, base LLM) while saving $15K USD and 500 hours in human evaluation costs. We find that closed-source LLMs such as GPT-4 and Claude 2 produce summaries with higher BooookScore than those generated by open-source models. While LLaMA 2 falls behind other models, Mixtral achieves performance on par with GPT-3.5-Turbo. Incremental updating yields lower BooookScore but higher level of detail than hierarchical merging, a trade-off sometimes preferred by annotators.

  • 4 authors
·
Oct 1, 2023

AtomicRAG: Atom-Entity Graphs for Retrieval-Augmented Generation

Recent GraphRAG methods integrate graph structures into text indexing and retrieval, using knowledge graph triples to connect text chunks, thereby improving retrieval coverage and precision. However, we observe that treating text chunks as the basic unit of knowledge representation rigidly groups multiple atomic facts together, limiting the flexibility and adaptability needed to support diverse retrieval scenarios. Additionally, triple-based entity linking is sensitive to relation-extraction errors, which can lead to missing or incorrect reasoning paths and ultimately hurt retrieval accuracy. To address these issues, we propose the Atom-Entity Graph, a more precise and reliable architecture for knowledge representation and indexing. In our approach, knowledge is stored as knowledge atoms, namely individual, self-contained units of factual information, rather than coarse-grained text chunks. This allows knowledge elements to be flexibly reassembled without mutual interference, thereby enabling seamless alignment with diverse query perspectives. Edges between entities simply indicate whether a relationship exists. By combining personalized PageRank with relevance-based filtering, we maintain accurate entity connections and improve the reliability of reasoning. Theoretical analysis and experiments on five public benchmarks show that the proposed AtomicRAG algorithm outperforms strong RAG baselines in retrieval accuracy and reasoning robustness. Code: https://github.com/7HHHHH/AtomicRAG.

  • 8 authors
·
Feb 9

SLUGGER: Lossless Hierarchical Summarization of Massive Graphs

Given a massive graph, how can we exploit its hierarchical structure for concisely but exactly summarizing the graph? By exploiting the structure, can we achieve better compression rates than state-of-the-art graph summarization methods? The explosive proliferation of the Web has accelerated the emergence of large graphs, such as online social networks and hyperlink networks. Consequently, graph compression has become increasingly important to process such large graphs without expensive I/O over the network or to disk. Among a number of approaches, graph summarization, which in essence combines similar nodes into a supernode and describe their connectivity concisely, protrudes with several advantages. However, we note that it fails to exploit pervasive hierarchical structures of real-world graphs as its underlying representation model enforces supernodes to be disjoint. In this work, we propose the hierarchical graph summarization model, which is an expressive graph representation model that includes the previous one proposed by Navlakha et al. as a special case. The new model represents an unweighted graph using positive and negative edges between hierarchical supernodes, each of which can contain others. Then, we propose Slugger, a scalable heuristic for concisely and exactly representing a given graph under our new model. Slugger greedily merges nodes into supernodes while maintaining and exploiting their hierarchy, which is later pruned. Slugger significantly accelerates this process by sampling, approximation, and memoization. Our experiments on 16 real-world graphs show that Slugger is (a) Effective: yielding up to 29.6% more concise summary than state-of-the-art lossless summarization methods, (b) Fast: summarizing a graph with 0.8 billion edges in a few hours, and (c) Scalable: scaling linearly with the number of edges in the input graph.

  • 3 authors
·
Dec 10, 2021

Deep Academic Survey: Stateful Agentic Closed-Loop Paradigm for Academic Survey Automation

Academic surveys play a central role in organizing rapidly expanding scholarly literature, yet their construction requires extensive paper analysis, coherent knowledge organization, fine-grained citation support, and reliable manuscript assembly. Existing Deep Research and automated survey generation systems address parts of this process, but typically do not coordinate paper understanding, literature organization, evidence-grounded drafting, and manuscript validation through a shared, revisable state. We introduce DAS, a stateful agentic framework for generating publication-oriented academic surveys. Its key idea is to separate reusable paper analysis from topic-specific manuscript construction. DAS builds on DAS-2M, a dynamically updated metadata lake containing survey-oriented representations of approximately two million papers. Its agents maintain explicit literature, organization, writing, and finalization states through candidate-grounded taxonomy planning, reverse paper-to-section routing, and hierarchical claim and citation planning. Semantic review reactivates only the affected writing states for repair and reevaluation, forming a scoped closed loop with deterministic validation. We further introduce DAS-Bench, a 30-topic benchmark, together with DAS-Eval, which assesses scholarly citation quality, taxonomic synthesis, hierarchical discourse, and manuscript assembly reliability through 16 criteria. Among systems evaluated on all 30 topics, DAS achieves the highest average in all four dimensions, with an overall score of 4.34 compared with 4.03 for the strongest competitor, and the same ordering is preserved on the matched 21-topic CS subset. Blinded expert evaluation further prefers DAS to Naive RAG on 27 of 30 topics and to AutoSurvey on 19 of 21 shared CS topics. The project page is available at https://zhikaixu24.github.io/projects/DAS/.

  • 6 authors
·
Aug 17

Detect-Order-Construct: A Tree Construction based Approach for Hierarchical Document Structure Analysis

Document structure analysis (aka document layout analysis) is crucial for understanding the physical layout and logical structure of documents, with applications in information retrieval, document summarization, knowledge extraction, etc. In this paper, we concentrate on Hierarchical Document Structure Analysis (HDSA) to explore hierarchical relationships within structured documents created using authoring software employing hierarchical schemas, such as LaTeX, Microsoft Word, and HTML. To comprehensively analyze hierarchical document structures, we propose a tree construction based approach that addresses multiple subtasks concurrently, including page object detection (Detect), reading order prediction of identified objects (Order), and the construction of intended hierarchical structure (Construct). We present an effective end-to-end solution based on this framework to demonstrate its performance. To assess our approach, we develop a comprehensive benchmark called Comp-HRDoc, which evaluates the above subtasks simultaneously. Our end-to-end system achieves state-of-the-art performance on two large-scale document layout analysis datasets (PubLayNet and DocLayNet), a high-quality hierarchical document structure reconstruction dataset (HRDoc), and our Comp-HRDoc benchmark. The Comp-HRDoc benchmark will be released to facilitate further research in this field.

  • 5 authors
·
Jan 22, 2024

Khondo: A Multimodal Benchmark for Document Packet Splitting of Bangla Forms

Document packets, multiple documents concatenated into a single file, are common in government and administrative workflows, yet splitting them into their constituent documents is difficult, especially for low-resource languages. We introduce Khondo (Bangla for split/segment), the first benchmark for document packet splitting on Bangladeshi government forms. Unlike prior English and OCR-text-based datasets, Khondo is bilingual (Bangla--English) and vision-native; where models operate directly on page images. It spans five concatenation schemes, from sequential to fully shuffled, across 14 administrative domains, with ground-truth boundaries, domain types, and page order. Zero-shot evaluation of MLLMs shows they cluster pages into their source documents fairly well but struggle in restoring the original page order once shuffled. To isolate what drives this difficulty, we run two controlled analyses, varying the prompt instruction and then the packet language. Both primarily affect ordering rather than clustering: (a) explicit page-order instructions are necessary but insufficient, and (b) English packets are ordered more reliably than Bangla, making page arrangement the dominant challenge and language a secondary but consistent factor. Khondo establishes page-order reconstruction as a key open problem in vision-based, low-resource document understanding, and provides a controlled benchmark for measuring progress toward solving it. Our dataset and code is available at https://huggingface.co/datasets/Mausul/khondo

  • 10 authors
·
Jul 22

SurveyG: A Multi-Agent LLM Framework with Hierarchical Citation Graph for Automated Survey Generation

Large language models (LLMs) are increasingly adopted for automating survey paper generation wang2406autosurvey, liang2025surveyx, yan2025surveyforge,su2025benchmarking,wen2025interactivesurvey. Existing approaches typically extract content from a large collection of related papers and prompt LLMs to summarize them directly. However, such methods often overlook the structural relationships among papers, resulting in generated surveys that lack a coherent taxonomy and a deeper contextual understanding of research progress. To address these shortcomings, we propose SurveyG, an LLM-based agent framework that integrates hierarchical citation graph, where nodes denote research papers and edges capture both citation dependencies and semantic relatedness between their contents, thereby embedding structural and contextual knowledge into the survey generation process. The graph is organized into three layers: Foundation, Development, and Frontier, to capture the evolution of research from seminal works to incremental advances and emerging directions. By combining horizontal search within layers and vertical depth traversal across layers, the agent produces multi-level summaries, which are consolidated into a structured survey outline. A multi-agent validation stage then ensures consistency, coverage, and factual accuracy in generating the final survey. Experiments, including evaluations by human experts and LLM-as-a-judge, demonstrate that SurveyG outperforms state-of-the-art frameworks, producing surveys that are more comprehensive and better structured to the underlying knowledge taxonomy of a field.

  • 6 authors
·
Oct 8, 2025

PaperDebugger: A Plugin-Based Multi-Agent System for In-Editor Academic Writing, Review, and Editing

Large language models are increasingly embedded into academic writing workflows, yet existing assistants remain external to the editor, preventing deep interaction with document state, structure, and revision history. This separation makes it impossible to support agentic, context-aware operations directly within LaTeX editors such as Overleaf. We present PaperDebugger, an in-editor, multi-agent, and plugin-based academic writing assistant that brings LLM-driven reasoning directly into the writing environment. Enabling such in-editor interaction is technically non-trivial: it requires reliable bidirectional synchronization with the editor, fine-grained version control and patching, secure state management, multi-agent scheduling, and extensible communication with external tools. PaperDebugger addresses these challenges through a Chrome-approved extension, a Kubernetes-native orchestration layer, and a Model Context Protocol (MCP) toolchain that integrates literature search, reference lookup, document scoring, and revision pipelines. Our demo showcases a fully integrated workflow, including localized edits, structured reviews, parallel agent execution, and diff-based updates, encapsulated within a minimal-intrusion user interface (UI). Early aggregated analytics demonstrate active user engagement and validate the practicality of an editor-native, agentic writing assistant. More details about this demo and video could be found at https://github.com/PaperDebugger/PaperDebugger.

Session-level Normalization and Click-through Data Enhancement for Session-based Evaluation

Since a user usually has to issue a sequence of queries and examine multiple documents to resolve a complex information need in a search session, researchers have paid much attention to evaluating search systems at the session level rather than the single-query level. Most existing session-level metrics evaluate each query separately and then aggregate the query-level scores using a session-level weighting function. The assumptions behind these metrics are that all queries in the session should be involved, and their orders are fixed. However, if a search system could make the user satisfied with her first few queries, she may not need any subsequent queries. Besides, in most real-world search scenarios, due to a lack of explicit feedback from real users, we can only leverage some implicit feedback, such as users' clicks, as relevance labels for offline evaluation. Such implicit feedback might be different from the real relevance in a search session as some documents may be omitted in the previous query but identified in the later reformulations. To address the above issues, we make two assumptions about session-based evaluation, which explicitly describe an ideal session-search system and how to enhance click-through data in computing session-level evaluation metrics. Based on our assumptions, we design a session-level metric called Normalized U-Measure (NUM). NUM evaluates a session as a whole and utilizes an ideal session to normalize the result of the actual session. Besides, it infers session-level relevance labels based on implicit feedback. Experiments on two public datasets demonstrate the effectiveness of NUM by comparing it with existing session-based metrics in terms of correlation with user satisfaction and intuitiveness. We also conduct ablation studies to explore whether these assumptions hold.

  • 3 authors
·
Jan 22, 2024

Medical Graph RAG: Towards Safe Medical Large Language Model via Graph Retrieval-Augmented Generation

We introduce a novel graph-based Retrieval-Augmented Generation (RAG) framework specifically designed for the medical domain, called MedGraphRAG, aimed at enhancing Large Language Model (LLM) capabilities and generating evidence-based results, thereby improving safety and reliability when handling private medical data. Our comprehensive pipeline begins with a hybrid static-semantic approach to document chunking, significantly improving context capture over traditional methods. Extracted entities are used to create a three-tier hierarchical graph structure, linking entities to foundational medical knowledge sourced from medical papers and dictionaries. These entities are then interconnected to form meta-graphs, which are merged based on semantic similarities to develop a comprehensive global graph. This structure supports precise information retrieval and response generation. The retrieval process employs a U-retrieve method to balance global awareness and indexing efficiency of the LLM. Our approach is validated through a comprehensive ablation study comparing various methods for document chunking, graph construction, and information retrieval. The results not only demonstrate that our hierarchical graph construction method consistently outperforms state-of-the-art models on multiple medical Q\&A benchmarks, but also confirms that the responses generated include source documentation, significantly enhancing the reliability of medical LLMs in practical applications. Code will be at: https://github.com/MedicineToken/Medical-Graph-RAG/tree/main

  • 3 authors
·
Aug 7, 2024

Dr. DocBench: A Comprehensive Benchmark for Expert-Level and Difficult Document Parsing

Document parsing and recognition are fundamental capabilities for vision-language models (VLMs) and document processing systems. However, existing Optical Character Recognition (OCR) and document parsing benchmarks are increasingly limited in coverage and difficulty: many focus on common document genres or uniformly sampled pages where modern parsers already perform strongly, while offering limited annotation for expert-domain structures such as chemical formula, music notation, complex tables, and cross-page layouts. We introduce Dr. DocBench, a difficulty-aware benchmark for expert-level document parsing. Built from a large-scale multilingual book corpus, Dr. DocBench spans 52 BISAC subject domains and selects challenging documents through parser-failure-based sampling, targeting cases where multiple state-of-the-art systems struggle. It contains 4,514 annotated pages from long documents averaging around 100 pages, with 65k high-quality page- and block-level annotations for layout, reading order, hierarchical relations, and domain-specific visual contents. Evaluations of pipeline-based parsers and general-purpose VLMs show that strong performance on existing benchmarks does not transfer to our expert-level document parsing. Our analysis reveals substantial failures across subjects, content types, and structural attributes, highlighting Dr. DocBench as a comprehensive testbed for diagnosing and advancing document intelligence.

  • 25 authors
·
May 30

BiblioPage: A Dataset of Scanned Title Pages for Bibliographic Metadata Extraction

Manual digitization of bibliographic metadata is time consuming and labor intensive, especially for historical and real-world archives with highly variable formatting across documents. Despite advances in machine learning, the absence of dedicated datasets for metadata extraction hinders automation. To address this gap, we introduce BiblioPage, a dataset of scanned title pages annotated with structured bibliographic metadata. The dataset consists of approximately 2,000 monograph title pages collected from 14 Czech libraries, spanning a wide range of publication periods, typographic styles, and layout structures. Each title page is annotated with 16 bibliographic attributes, including title, contributors, and publication metadata, along with precise positional information in the form of bounding boxes. To extract structured information from this dataset, we valuated object detection models such as YOLO and DETR combined with transformer-based OCR, achieving a maximum mAP of 52 and an F1 score of 59. Additionally, we assess the performance of various visual large language models, including LlamA 3.2-Vision and GPT-4o, with the best model reaching an F1 score of 67. BiblioPage serves as a real-world benchmark for bibliographic metadata extraction, contributing to document understanding, document question answering, and document information extraction. Dataset and evaluation scripts are availible at: https://github.com/DCGM/biblio-dataset

  • 4 authors
·
Mar 25, 2025 2

MEBench: Benchmarking Large Language Models for Cross-Document Multi-Entity Question Answering

Multi-entity question answering (MEQA) represents significant challenges for large language models (LLM) and retrieval-augmented generation (RAG) systems, which frequently struggle to consolidate scattered information across diverse documents. While existing methods excel at single-document comprehension, they often struggle with cross-document aggregation, particularly when resolving entity-dense questions like "What is the distribution of ACM Fellows among various fields of study?", which require integrating entity-centric insights from heterogeneous sources (e.g., Wikipedia pages). To address this gap, we introduce MEBench, a novel multi-document, multi-entity benchmark designed to systematically evaluate LLMs' capacity to retrieve, consolidate, and reason over fragmented information. Our benchmark comprises 4,780 questions which are systematically categorized into three primary categories, further divided into eight distinct types, ensuring broad coverage of real-world multi-entity reasoning scenarios. Our experiments on state-of-the-art LLMs (e.g., GPT-4, Llama-3) and RAG pipelines reveal critical limitations: even advanced models achieve only 59% accuracy on MEBench. Our benchmark emphasizes the importance of completeness and factual precision of information extraction in MEQA tasks, using Entity-Attributed F1 (EA-F1) metric for granular evaluation of entity-level correctness and attribution validity. MEBench not only highlights systemic weaknesses in current LLM frameworks but also provides a foundation for advancing robust, entity-aware QA architectures.

  • 7 authors
·
Sep 23, 2025

PaperScope: A Multi-Modal Multi-Document Benchmark for Agentic Deep Research Across Massive Scientific Papers

Leveraging Multi-modal Large Language Models (MLLMs) to accelerate frontier scientific research is promising, yet how to rigorously evaluate such systems remains unclear. Existing benchmarks mainly focus on single-document understanding, whereas real scientific workflows require integrating evidence from multiple papers, including their text, tables, and figures. As a result, multi-modal, multi-document scientific reasoning remains underexplored and lacks systematic evaluation. To address this gap, we introduce PaperScope, a multi-modal multi-document benchmark designed for agentic deep research. PaperScope presents three advantages: (1) Structured scientific grounding. It is built on a knowledge graph of over 2,000 AI papers spanning three years, providing a structured foundation for research-oriented queries. (2) Semantically dense evidence construction. It integrates semantically related key information nodes and employs optimized random-walk article selector to sample thematically coherent paper sets, thereby ensuring adequate semantic density and task complexity. (3) Multi-task evaluation of scientific reasoning. It contains over 2,000 QA pairs across reasoning, retrieval, summarization, and problem solving, enabling evaluation of multi-step scientific reasoning. Experimental results show that even advanced systems such as OpenAI Deep Research and Tongyi Deep Research achieve limited scores on PaperScope, highlighting the difficulty of long-context retrieval and deep multi-source reasoning. PaperScope thus provides a rigorous benchmark alongside a scalable pipeline for constructing large-scale multi-modal, multi-source deep research datasets.

  • 5 authors
·
Apr 12

GroupRank: A Groupwise Reranking Paradigm Driven by Reinforcement Learning

Large Language Models have shown strong potential as rerankers to enhance the overall performance of RAG systems. However, existing reranking paradigms are constrained by a core theoretical and practical dilemma: Pointwise methods, while simple and highly flexible, evaluate documents independently, making them prone to the Ranking Myopia Trap, overlooking the relative importance between documents. In contrast, Listwise methods can perceive the global ranking context, but suffer from inherent List Rigidity, leading to severe scalability and flexibility issues when handling large candidate sets. To address these challenges, we propose Groupwise, a novel reranking paradigm. In this approach, the query and a group of candidate documents are jointly fed into the model, which performs within-group comparisons to assign individual relevance scores to each document. This design retains the flexibility of Pointwise methods while enabling the comparative capability of Listwise methods. We further adopt GRPO for model training, equipped with a heterogeneous reward function that integrates ranking metrics with a distributional reward aimed at aligning score distributions across groups. To overcome the bottleneck caused by the scarcity of high quality labeled data, we further propose an innovative pipeline for synthesizing high quality retrieval and ranking data. The resulting data can be leveraged not only for training the reranker but also for training the retriever. Extensive experiments validate the effectiveness of our approach. On two reasoning intensive retrieval benchmarks, BRIGHT and R2MED.

AQ-MedAI AQ
·
Nov 10, 2025 7

VisR-RAG-Fin: Benchmarking Multimodal RAG over Visually Rich Financial Documents

Enterprise documents such as financial reports are increasingly processed by automated systems, yet they are primarily designed for human reading and exhibit complex visual structure, combining dense text with tables, charts, diagrams, and rich layouts. These characteristics pose significant challenges for Retrieval-Augmented Generation (RAG) systems, which must retrieve relevant pages and leverage visual and structural information during answer generation. Despite recent advances in multimodal retrieval and vision-language models, there remains a limited understanding of how design choices across retrieval and generation components affect end-to-end RAG performance on visually rich documents. In this paper, we present a comprehensive empirical study of multimodal RAG for page-level Question Answering (QA) over financial documents. We introduce VisR-RAG-Fin (Visually Rich RAG for Finance), an open-source benchmark constructed through a general pipeline for visually rich documents that preserves original layout and visual content. Using this benchmark, we systematically analyze retrieval and generation behavior under text-only, multimodal, and hybrid configurations, providing a foundation for rigorous evaluation of RAG systems on complex enterprise document collections. Overall, this work provides actionable insights for practitioners designing and evaluating multimodal RAG pipelines over complex, visually rich enterprise documents.

  • 9 authors
·
Oct 16

SymbioticRAG: Enhancing Document Intelligence Through Human-LLM Symbiotic Collaboration

We present SymbioticRAG, a novel framework that fundamentally reimagines Retrieval-Augmented Generation~(RAG) systems by establishing a bidirectional learning relationship between humans and machines. Our approach addresses two critical challenges in current RAG systems: the inherently human-centered nature of relevance determination and users' progression from "unconscious incompetence" in query formulation. SymbioticRAG introduces a two-tier solution where Level 1 enables direct human curation of retrieved content through interactive source document exploration, while Level 2 aims to build personalized retrieval models based on captured user interactions. We implement Level 1 through three key components: (1)~a comprehensive document processing pipeline with specialized models for layout detection, OCR, and extraction of tables, formulas, and figures; (2)~an extensible retriever module supporting multiple retrieval strategies; and (3)~an interactive interface that facilitates both user engagement and interaction data logging. We experiment Level 2 implementation via a retriever strategy incorporated LLM summarized user intention from user interaction logs. To maintain high-quality data preparation, we develop a human-on-the-loop validation interface that improves pipeline output while advancing research in specialized extraction tasks. Evaluation across three scenarios (literature review, geological exploration, and education) demonstrates significant improvements in retrieval relevance and user satisfaction compared to traditional RAG approaches. To facilitate broader research and further advancement of SymbioticRAG Level 2 implementation, we will make our system openly accessible to the research community.

  • 7 authors
·
May 5, 2025

PaperArena: An Evaluation Benchmark for Tool-Augmented Agentic Reasoning on Scientific Literature

Understanding and reasoning on the web-scale scientific literature is a crucial touchstone for large language model (LLM) based agents designed to support complex knowledge-intensive tasks. However, existing works are mainly restricted to tool-free tasks within isolated papers, largely due to the lack of a benchmark for cross-paper reasoning and multi-tool orchestration in real research scenarios. In this work, we propose PaperArena, an evaluation benchmark for agents to address real-world research questions that typically require integrating information across multiple papers with the assistance of external tools. Given a research question, agents should integrate diverse formats across multiple papers through reasoning and interacting with appropriate tools, thereby producing a well-grounded answer. To support standardized evaluation, we provide a modular and extensible platform for agent execution, offering tools such as multimodal parsing, context retrieval, and programmatic computation. Experimental results reveal that even the most advanced LLM powering a well-established agent system achieves merely 38.78% average accuracy. On the hard subset, accuracy drops to only 18.47%, highlighting great potential for improvement. We also present several empirical findings, including that all agents tested exhibit inefficient tool usage, often invoking more tools than necessary to solve a task. We invite the community to adopt PaperArena to develop and evaluate more capable agents for scientific discovery. Our code and data are available https://github.com/Melmaphother/PaperArena.

  • 6 authors
·
Oct 12, 2025