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Oct 16

Permutation-Robust Decision Modeling with Candidate-Independent Block-Causal Attention

Decision models often score a variable-sized set of candidate actions encoded in a single sequence. This setting is increasingly relevant for System 1 components inside generative systems, where candidates may be proposed or ordered differently across runs. Standard causal cross-encoding is expressive, but it can make a candidate's score depend on serialization order rather than on the underlying decision problem. We introduce candidate-independent block-causal attention, which preserves causal computation within the shared context and each candidate while blocking cross-candidate information flow and resetting candidate positions. We compare this architecture with standard causal attention and complementary invariant baselines across Gemma 3 1B, Qwen3 1.7B, and Qwen3 4B backbones. Candidate-independent attention consistently reduces permutation sensitivity while retaining competitive decision quality; ablations indicate that candidate isolation is the primary source of the effect, with position resetting completing the intended symmetry. A larger Qwen3-4B study further examines the behavior of the proposed architecture with substantially more training data. Code is available at the https://github.com/guyAmit/ci-decision-models{blue{project repository}}, and the https://huggingface.co/Guy-Amit/qwen3-4b-ci-decision-4096-poc{blue{Qwen3-4B model artifact}} is available on Hugging Face.

  • 1 authors
·
Sep 30

Stable-RAG: Mitigating Retrieval-Permutation-Induced Hallucinations in Retrieval-Augmented Generation

Retrieval-Augmented Generation (RAG) has become a key paradigm for reducing factual hallucinations in large language models (LLMs), yet little is known about how the order of retrieved documents affects model behavior. We empirically show that under Top-5 retrieval with the gold document included, LLM answers vary substantially across permutations of the retrieved set, even when the gold document is fixed in the first position. This reveals a previously underexplored sensitivity to retrieval permutations. Although robust RAG methods primarily focus on enhancing LLM robustness to low-quality retrieval and mitigating positional bias to distribute attention fairly over long contexts, neither approach directly addresses permutation sensitivity. In this paper, we propose Stable-RAG, which exploits permutation sensitivity estimation to mitigate permutation-induced hallucinations. Stable-RAG runs the generator under multiple retrieval orders, clusters hidden states, and decodes from a cluster-center representation that captures the dominant reasoning pattern. It then uses these reasoning results to align hallucinated outputs toward the correct answer, encouraging the model to produce consistent and accurate predictions across document permutations. Experiments on three QA datasets show that Stable-RAG significantly improves answer accuracy, reasoning consistency and robust generalization across datasets, retrievers, and input lengths compared with baselines.

Pard: Permutation-Invariant Autoregressive Diffusion for Graph Generation

Graph generation has been dominated by autoregressive models due to their simplicity and effectiveness, despite their sensitivity to ordering. Yet diffusion models have garnered increasing attention, as they offer comparable performance while being permutation-invariant. Current graph diffusion models generate graphs in a one-shot fashion, but they require extra features and thousands of denoising steps to achieve optimal performance. We introduce PARD, a Permutation-invariant Auto Regressive Diffusion model that integrates diffusion models with autoregressive methods. PARD harnesses the effectiveness and efficiency of the autoregressive model while maintaining permutation invariance without ordering sensitivity. Specifically, we show that contrary to sets, elements in a graph are not entirely unordered and there is a unique partial order for nodes and edges. With this partial order, PARD generates a graph in a block-by-block, autoregressive fashion, where each block's probability is conditionally modeled by a shared diffusion model with an equivariant network. To ensure efficiency while being expressive, we further propose a higher-order graph transformer, which integrates transformer with PPGN. Like GPT, we extend the higher-order graph transformer to support parallel training of all blocks. Without any extra features, PARD achieves state-of-the-art performance on molecular and non-molecular datasets, and scales to large datasets like MOSES containing 1.9M molecules.

  • 3 authors
·
Feb 5, 2024

Small Foundation Models of Human Cognition and Behaviour

Large language models fine-tuned on human behavioural data have emerged as general-purpose cognitive proxies, but the scale this requires, and whether these models process task structure or exploit statistical shortcuts, remain open questions. We train fourteen models from 135M to 14B parameters across four architecture families on Psych-101, a dataset of 10.7 million trial-level choices from 160 experiments. For in-distribution simulations, scale barely matters. The models fall within a narrow band, as though against a ceiling, and 0.6B to 1B parameters suffice to match a 70B baseline on held-out participants. Out-of-distribution, that band opens into a markedly steeper scaling gradient, with larger models clearly advantaged in generalisation to novel task structure. To determine what information these models use, we run two diagnostics. We progressively strip four prompt channels -- task instructions, experimental stimuli, outcome feedback, and choice history -- across 27 experiments, and permute trial order. Masking the content of stimuli and feedback destroys 75.7% of learned information and pushes models below chance, demonstrating that choice history alone does not account for performance. Permutation reveals invariance on tasks with independent trials but sensitivity where trial order is determined by prior responses. Small cognitively fine-tuned models therefore show promise as noise ceiling estimators for psychological experiments, though their scope remains bounded by the paradigms seen in training.

socius socius labs
·
Aug 8 4

Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking

Integrating heterogeneous biomedical data including imaging, omics, and clinical records supports accurate diagnosis and personalised care. Graph-based models fuse such non-Euclidean data by capturing spatial and relational structure, yet clinical uptake requires regulator-ready interpretability. We present the first technical survey of interpretable graph based models for multimodal biomedical data, covering 26 studies published between Jan 2019 and Sep 2024. Most target disease classification, notably cancer and rely on static graphs from simple similarity measures, while graph-native explainers are rare; post-hoc methods adapted from non-graph domains such as gradient saliency, and SHAP predominate. We group existing approaches into four interpretability families, outline trends such as graph-in-graph hierarchies, knowledge-graph edges, and dynamic topology learning, and perform a practical benchmark. Using an Alzheimer disease cohort, we compare Sensitivity Analysis, Gradient Saliency, SHAP and Graph Masking. SHAP and Sensitivity Analysis recover the broadest set of known AD pathways and Gene-Ontology terms, whereas Gradient Saliency and Graph Masking surface complementary metabolic and transport signatures. Permutation tests show all four beat random gene sets, but with distinct trade-offs: SHAP and Graph Masking offer deeper biology at higher compute cost, while Gradient Saliency and Sensitivity Analysis are quicker though coarser. We also provide a step-by-step flowchart covering graph construction, explainer choice and resource budgeting to help researchers balance transparency and performance. This review synthesises the state of interpretable graph learning for multimodal medicine, benchmarks leading techniques, and charts future directions, from advanced XAI tools to under-studied diseases, serving as a concise reference for method developers and translational scientists.

  • 6 authors
·
May 3, 2025

Beyond Activation Alignment:The Alignment-Diversity Tradeoff in Task-Aware LLM Quantization

Mixed-precision quantization (MPQ) has become a key technique for deploying large language models under stringent memory and compute constraints. We first identify a phenomenon that we term the Perplexity Illusion: layers ranked as important by perplexity-based sensitivity show little rank correlation with those that are most influential for complex reasoning performance, with Kendall τapprox 0 in our analysis. We further reveal an Alignment-Diversity Tradeoff: using only target-task calibration data can degrade post-quantization performance, whereas incorporating general-domain data stabilizes sensitivity estimation and improves robustness across tasks. Based on these observations, we propose TASA (Task-Aware Sensitivity Analysis), a two-level framework that jointly optimizes calibration-data composition and mixed-precision bit allocation. Specifically, TASA searches for a calibration-data mixture using a training-free gradient-trace alignment criterion, and then aggregates perplexity and reasoning-oriented sensitivity signals to guide both inter-layer and intra-layer bit allocation. Experiments on LLaMA-3-8B and Qwen2.5-7B reveal a precision inversion: appropriately allocated 3.5-bit models can match or surpass less task-aware 4-bit baselines. At an average precision of 3.5 bits, TASA matches or outperforms several competitive 4-bit uniform baselines in aggregate accuracy, and improves over the strongest W3 baseline on GSM8K by more than 20 absolute points on LLaMA-3-8B. These results show that calibration-data composition substantially affects task-sensitive quantization, a factor underexplored in prior work.

  • 6 authors
·
Jun 30

Small Edits, Big Consequences: Telling Good from Bad Robustness in Large Language Models

Large language models (LLMs) now write code in settings where misreading a single word can break safety or cost money, yet we still expect them to overlook stray typos. To probe where useful robustness ends and harmful insensitivity begins, we compile 50 LeetCode problems and craft three minimal prompt perturbations that should vary in importance: (i) progressive underspecification deleting 10 % of words per step; (ii) lexical flip swapping a pivotal quantifier ("max" to "min"); and (iii) jargon inflation replacing a common noun with an obscure technical synonym. Six frontier models, including three "reasoning-tuned" versions, solve each mutated prompt, and their Python outputs are checked against the original test suites to reveal whether they reused the baseline solution or adapted. Among 11 853 generations we observe a sharp double asymmetry. Models remain correct in 85 % of cases even after 90 % of the prompt is missing, showing over-robustness to underspecification, yet only 54 % react to a single quantifier flip that reverses the task, with reasoning-tuned variants even less sensitive than their bases. Jargon edits lie in between, passing through 56 %. Current LLMs thus blur the line between harmless noise and meaning - changing edits, often treating both as ignorable. Masking salient anchors such as function names can force re - evaluation. We advocate evaluation and training protocols that reward differential sensitivity: stay steady under benign noise but adapt - or refuse - when semantics truly change.

  • 2 authors
·
Jul 14, 2025

Position Bias is Hidden Behind Ceiling Effects: A Permutation Diagnostic for LLM Benchmarks

Position bias in multiple-choice LLM evaluation is widely cited as a confound in capability comparisons, but published measurements rely on single answer-order shuffles whose results confound the bias signal with content-level noise and sampling stochasticity. I introduce inspect_permute, an open-source extension to the inspect_ai evaluation framework that runs exhaustive answer-order permutations per question and reports the chi-squared / Cramer V signature of position bias with bootstrap confidence intervals. I apply the tool across four vendors (gpt-4o-mini, claude-haiku-4-5, gemini-2.5-flash, grok-3) on five MMLU subjects, 24,000 API calls under temperature-0 generation, with falsifier predictions pre-registered via a public SHA-256 hash before half the data was observed. Position bias turns out to be statistically detectable only within a roughly 60-95% base-accuracy Goldilocks zone. Below it, processing-load dominance swamps subject-specific signal; above it, ceiling effects compress the variance below the chi-squared test resolution. Detectable cells separate into two mechanism types: monotone A-to-D decrease (processing_load, in low-tier models) and non-monotone D-drop (content_ambiguity, in a narrow capability band). Standard MMLU places every frontier-tier model above the detection band, so absence of signal there should be read as not measurable, not unbiased. Together with the ceiling-effect characterisation in arXiv:2606.26185, this work brackets the detectable region of position-bias measurement and makes the field central question askable in a verifiable form. Package, data, preregistration under MIT.

  • 1 authors
·
Jul 22

Exact Learning of Permutations for Nonzero Binary Inputs with Logarithmic Training Size and Quadratic Ensemble Complexity

The ability of an architecture to realize permutations is quite fundamental. For example, Large Language Models need to be able to correctly copy (and perhaps rearrange) parts of the input prompt into the output. Classical universal approximation theorems guarantee the existence of parameter configurations that solve this task but offer no insights into whether gradient-based algorithms can find them. In this paper, we address this gap by focusing on two-layer fully connected feed-forward neural networks and the task of learning permutations on nonzero binary inputs. We show that in the infinite width Neural Tangent Kernel (NTK) regime, an ensemble of such networks independently trained with gradient descent on only the k standard basis vectors out of 2^k - 1 possible inputs successfully learns any fixed permutation of length k with arbitrarily high probability. By analyzing the exact training dynamics, we prove that the network's output converges to a Gaussian process whose mean captures the ground truth permutation via sign-based features. We then demonstrate how averaging these runs (an "ensemble" method) and applying a simple rounding step yields an arbitrarily accurate prediction on any possible input unseen during training. Notably, the number of models needed to achieve exact learning with high probability (which we refer to as ensemble complexity) exhibits a linearithmic dependence on the input size k for a single test input and a quadratic dependence when considering all test inputs simultaneously.

  • 3 authors
·
Feb 23, 2025

Saturation Makes Quantization Error Additive: A Coverage Model with a Certificate

Mixed-precision quantization must decide which parts of a model to keep at higher precision. A common premise, shared by sensitivity-based methods such as HAWQ and CoopQ, is that the loss from quantizing a set of layers can be reconstructed from per-layer or pairwise sensitivities measured in isolation. We test this premise at the 4-bit weight-and-activation precisions now being deployed, treating the change in loss f(S) from quantizing a layer set S as a set function on the Boolean cube and analyzing it through two classical changes of basis. This analysis yields two findings. First, across configurations drawn from the deployment distribution, 85--93\% of the variance of f is explained by per-layer effects alone. Second, a monotone transform of a sum of per-layer terms reproduces f's ranking of configurations, misordering at most 2\% of pairs. We propose the coverage model f(S)=cbigl(1-prod_{iin S}(1-a_i)bigr), which reproduces the measured variance profile of f to within a few percent from its L fitted break-rates. This structure supports two predictors of a configuration's loss, each with L+1 parameters. The additive model is the optimal first-order predictor. By Parseval's identity its mean-squared error equals the variance of f left unexplained by per-layer effects, which we measure on full lattices, estimate out of sample at full-network scale, and report with every result as a certificate of how well any additive model can do. The coverage model itself is the second predictor. As allocators at matched memory, they attain the lowest KL divergence among the compared allocators on models from 30B to 355B parameters. Below four bits, the resulting allocations continue to solve code and reasoning tasks at budgets where allocations from gradient sensitivities no longer produce terminating generations.

  • 1 authors
·
Jul 13

Equal Ranking Quality, Different Decisions: Measuring and Reducing Order Dependence in LLM Scorers

In passage reranking, response ranking and multi-document question answering, LLMs can score several candidate documents or responses together in one prompt, each still receiving its own score. Such scorers are selected on ranking quality, but their scores determine a decision: what a score threshold retains, a reader answers, or which chosen/rejected pair enters preference training. Because the candidates share that prompt, reordering them changes their scores. The same query over the same candidates should still yield the same decision. However, equal ranking quality does not imply equal decisions: on passage reranking, five trained scorers within 0.010 nDCG@10 retain sets that overlap by only 0.66-0.84 when reordered. No prompt-time change we test resolves that dependence: the only one that improves ranking quality does not measurably improve decision stability. We introduce order-consistency SFT (OC-SFT), which attenuates it in the weights by penalizing disagreement between a candidate's scores across orderings. It holds ranking quality and leads every decision-stability measure among trained scorers on all three tasks. It is also more stable on 12 base models than order-averaged distillation, which trains on labels averaged across permutations. One OC-SFT permutation retains sets that overlap more than ten averaged off-the-shelf permutations. A comparison of such scorers should therefore report what a threshold retains and a reader answers, not ranking quality alone. Code is available at https://github.com/thomsonreuters/presentation-dependence.

Jeva: System One Models from First Principles

System one models enable direct, low-latency decision-making. Yet recent practice of predicting an answer from serialized text does not, by itself, respect the structure of a decision problem. We argue that current designs underemphasize four important structural requirements. (i) null-aware: Models should distinguish answer absence from uncertainty among candidates; (ii) permutation-invariant: Reordering alternatives should not change the decision; (iii) option-scalable: Growing candidate sets should not require redefining the output space; (iv) cacheable: Request-independent computation over recurring alternatives should be reusable across requests. We introduce Jeva, a decision-native architecture that addresses these requirements jointly. A shared encoder independently represents the request and each option, while a compact decision stack refines only the request state against immutable option memory. Symmetric aggregation yields permutation-equivariant probabilities; shared scoring accommodates variable-size candidate sets. A separate coverage estimate distinguishes answer absence from candidate competition, enabling explicit null outcomes. Request-independent option representations and layer projections support reuse across newly assembled sets. These mechanisms unify Choice, Noul, and Score outputs. Across evaluations, Jeva combines strong typed-decision performance with near-perfect null detection and no decision flips under any tested permutations. It scales to thousands of candidates and substantially reduces latency through cross-request reuse without changing decisions.

Understanding the Prompt Sensitivity

Prompt sensitivity, which refers to how strongly the output of a large language model (LLM) depends on the exact wording of its input prompt, raises concerns among users about the LLM's stability and reliability. In this work, we consider LLMs as multivariate functions and perform a first-order Taylor expansion, thereby analyzing the relationship between meaning-preserving prompts, their gradients, and the log probabilities of the model's next token. We derive an upper bound on the difference between log probabilities using the Cauchy-Schwarz inequality. We show that LLMs do not internally cluster similar inputs like smaller neural networks do, but instead disperse them. This dispersing behavior leads to an excessively high upper bound on the difference of log probabilities between two meaning-preserving prompts, making it difficult to effectively reduce to 0. In our analysis, we also show which types of meaning-preserving prompt variants are more likely to introduce prompt sensitivity risks in LLMs. In addition, we demonstrate that the upper bound is strongly correlated with an existing prompt sensitivity metric, PromptSensiScore. Moreover, by analyzing the logit variance, we find that prompt templates typically exert a greater influence on logits than the questions themselves. Overall, our results provide a general interpretation for why current LLMs can be highly sensitive to prompts with the same meaning, offering crucial evidence for understanding the prompt sensitivity of LLMs. Code for experiments is available at https://github.com/ku-nlp/Understanding_the_Prompt_Sensitivity.

  • 2 authors
·
Apr 19

Enhancing Neural Subset Selection: Integrating Background Information into Set Representations

Learning neural subset selection tasks, such as compound selection in AI-aided drug discovery, have become increasingly pivotal across diverse applications. The existing methodologies in the field primarily concentrate on constructing models that capture the relationship between utility function values and subsets within their respective supersets. However, these approaches tend to overlook the valuable information contained within the superset when utilizing neural networks to model set functions. In this work, we address this oversight by adopting a probabilistic perspective. Our theoretical findings demonstrate that when the target value is conditioned on both the input set and subset, it is essential to incorporate an invariant sufficient statistic of the superset into the subset of interest for effective learning. This ensures that the output value remains invariant to permutations of the subset and its corresponding superset, enabling identification of the specific superset from which the subset originated. Motivated by these insights, we propose a simple yet effective information aggregation module designed to merge the representations of subsets and supersets from a permutation invariance perspective. Comprehensive empirical evaluations across diverse tasks and datasets validate the enhanced efficacy of our approach over conventional methods, underscoring the practicality and potency of our proposed strategies in real-world contexts.

  • 8 authors
·
Feb 5, 2024

The Impossibility of Inverse Permutation Learning in Transformer Models

In this technical note, we study the problem of inverse permutation learning in decoder-only transformers. Given a permutation and a string to which that permutation has been applied, the model is tasked with producing the original (``canonical'') string. We argue that this task models a natural robustness property across a variety of reasoning tasks, including long-context retrieval, multiple choice QA and in-context learning. Our primary contribution is an impossibility result: we show that an arbitrary depth, decoder-only transformer cannot learn this task. This result concerns the expressive capacity of decoder-only transformer models and is agnostic to training dynamics or sample complexity. We give a pair of alternative constructions under which inverse permutation learning is feasible. The first of these highlights the fundamental role of the causal attention mask, and reveals a gap between the expressivity of encoder-decoder transformers and the more popular decoder-only architecture. The latter result is more surprising: we show that simply padding the input with ``scratch tokens" yields a construction under which inverse permutation learning is possible. We conjecture that this may suggest an alternative mechanism by which chain-of-thought prompting or, more generally, intermediate ``thinking'' tokens can enable reasoning in large language models, even when these tokens encode no meaningful semantic information (e.g., the results of intermediate computations).

  • 4 authors
·
Sep 28, 2025

Analysis of Linear Mode Connectivity via Permutation-Based Weight Matching

Recently, Ainsworth et al. showed that using weight matching (WM) to minimize the L_2 distance in a permutation search of model parameters effectively identifies permutations that satisfy linear mode connectivity (LMC), in which the loss along a linear path between two independently trained models with different seeds remains nearly constant. This paper provides a theoretical analysis of LMC using WM, which is crucial for understanding stochastic gradient descent's effectiveness and its application in areas like model merging. We first experimentally and theoretically show that permutations found by WM do not significantly reduce the L_2 distance between two models and the occurrence of LMC is not merely due to distance reduction by WM in itself. We then provide theoretical insights showing that permutations can change the directions of the singular vectors, but not the singular values, of the weight matrices in each layer. This finding shows that permutations found by WM mainly align the directions of singular vectors associated with large singular values across models. This alignment brings the singular vectors with large singular values, which determine the model functionality, closer between pre-merged and post-merged models, so that the post-merged model retains functionality similar to the pre-merged models, making it easy to satisfy LMC. Finally, we analyze the difference between WM and straight-through estimator (STE), a dataset-dependent permutation search method, and show that WM outperforms STE, especially when merging three or more models.

  • 3 authors
·
Feb 6, 2024

Compared to What? Baselines and Metrics for Counterfactual Prompting

Counterfactual prompting (i.e., perturbing a single factor and measuring output change) is widely used to evaluate things like LLM bias and CoT faithfulness. But in this work we argue that observed effects cannot be attributed to the targeted factor without accounting for baseline ``meaning-preserving'' modifications to text that establish general model sensitivity. This is because every counterfactual edit is a compound treatment that bundles the variable of interest with incidental surface-form variation; this violates treatment variation irrelevance. We observe prediction flip rates on MedQA of 14.9% when we surgically change patient gender. However, this is statistically indistinguishable from the flip rates induced by simply paraphrasing inputs (14.1%). In this case, it would therefore be unwarranted to conclude that the LLM is especially sensitive to patient gender. To account for this and robustly measure the effects of targeted interventions, we propose a framework in which we compare (via statistical testing) differences observed under target interventions to those induced by paraphrasing inputs. We then use this framework to revisit a analysis done on the MedPerturb dataset, which reported evidence of model sensitivity to patient demographics and stylistic cues. We find that these effects largely dissipate when we account for general model sensitivity, with only 5 of 120 tests reaching statistical significance. Applying the same framework to occupational biography classification, we detect clearly significant directional gender bias, showing that the framework identifies real directional effects even when they are small. We evaluate a range of metrics -- aggregate, per-sample distributional, and regression -- and find that per-sample metrics are dramatically more powerful than aggregate metrics and regression powerfully and uniquely characterizes effect direction and magnitude.

  • 4 authors
·
Apr 30

POSIX: A Prompt Sensitivity Index For Large Language Models

Despite their remarkable capabilities, Large Language Models (LLMs) are found to be surprisingly sensitive to minor variations in prompts, often generating significantly divergent outputs in response to minor variations in the prompts, such as spelling errors, alteration of wording or the prompt template. However, while assessing the quality of an LLM, the focus often tends to be solely on its performance on downstream tasks, while very little to no attention is paid to prompt sensitivity. To fill this gap, we propose POSIX - a novel PrOmpt Sensitivity IndeX as a reliable measure of prompt sensitivity, thereby offering a more comprehensive evaluation of LLM performance. The key idea behind POSIX is to capture the relative change in loglikelihood of a given response upon replacing the corresponding prompt with a different intent-preserving prompt. We provide thorough empirical evidence demonstrating the efficacy of POSIX in capturing prompt sensitivity and subsequently use it to measure and thereby compare prompt sensitivity of various open-source LLMs. We find that merely increasing the parameter count or instruction tuning does not necessarily reduce prompt sensitivity whereas adding some few-shot exemplars, even just one, almost always leads to significant decrease in prompt sensitivity. We also find that alterations to prompt template lead to the highest sensitivity in the case of MCQ type tasks, whereas paraphrasing results in the highest sensitivity in open-ended generation tasks. The code for reproducing our results is open-sourced at https://github.com/kowndinya-renduchintala/POSIX.

  • 4 authors
·
Oct 3, 2024

Quantifying Language Models' Sensitivity to Spurious Features in Prompt Design or: How I learned to start worrying about prompt formatting

As large language models (LLMs) are adopted as a fundamental component of language technologies, it is crucial to accurately characterize their performance. Because choices in prompt design can strongly influence model behavior, this design process is critical in effectively using any modern pre-trained generative language model. In this work, we focus on LLM sensitivity to a quintessential class of meaning-preserving design choices: prompt formatting. We find that several widely used open-source LLMs are extremely sensitive to subtle changes in prompt formatting in few-shot settings, with performance differences of up to 76 accuracy points when evaluated using LLaMA-2-13B. Sensitivity remains even when increasing model size, the number of few-shot examples, or performing instruction tuning. Our analysis suggests that work evaluating LLMs with prompting-based methods would benefit from reporting a range of performance across plausible prompt formats, instead of the currently-standard practice of reporting performance on a single format. We also show that format performance only weakly correlates between models, which puts into question the methodological validity of comparing models with an arbitrarily chosen, fixed prompt format. To facilitate systematic analysis we propose FormatSpread, an algorithm that rapidly evaluates a sampled set of plausible prompt formats for a given task, and reports the interval of expected performance without accessing model weights. Furthermore, we present a suite of analyses that characterize the nature of this sensitivity, including exploring the influence of particular atomic perturbations and the internal representation of particular formats.

  • 4 authors
·
Oct 17, 2023

Rethink MAE with Linear Time-Invariant Dynamics

Standard representation probing for visual models relies on mathematically permutation-invariant operations like Global Average Pooling (GAP) or CLS tokens, treating patch representations as an unstructured bag-of-words. We challenge this paradigm by demonstrating that token order is a critical, exploitable dimension in frozen visual representations (e.g., MAE, BEiT, DINOv2, and ViT as CLS-ablation extreme). We propose SSMProbe, a probing framework driven by a State Space Model (SSM). Operating as discrete Linear Time-Invariant (LTI) dynamical systems, SSMs act as permutation-sensitive probes where sequence order strictly dictates the final state due to inherent memory decay. Formulating token ordering as an information scheduling problem, we compare fixed scan heuristics against a differentiable soft permutation (Sinkhorn-based) learned from downstream supervision. Evaluations on standard and fine-grained classification benchmarks reveal a striking order gap: while fixed scans fail dramatically on highly localized patch features, our learned soft permutation successfully extracts highly competitive performance from otherwise heavily localized patch sequences. We find that pre-training objectives fundamentally shape token structure: DINOv2 concentrates global semantics in optimized CLS tokens leaving patches hyperspecialized, pure MAE preserves distributed representations with heterogeneous patch informativeness, and ViT represents a supervised CLS-dominated extreme. BEiT occupies middle ground. This heterogeneity is order-dependent -- meaning the SSM probe's performance depends critically on which tokens are placed at which temporal positions -- and is not merely a topological property of the spatial grid. SSMProbe's learned routing effectively discovers and exploits this heterogeneity, offering a powerful new diagnostic lens for visual representation analysis.

  • 1 authors
·
Apr 28

LLM Swiss Round: Aggregating Multi-Benchmark Performance via Competitive Swiss-System Dynamics

The rapid proliferation of Large Language Models (LLMs) and diverse specialized benchmarks necessitates a shift from fragmented, task-specific metrics to a holistic, competitive ranking system that effectively aggregates performance across multiple ability dimensions. Primarily using static scoring, current evaluation methods are fundamentally limited. They struggle to determine the proper mix ratio across diverse benchmarks, and critically, they fail to capture a model's dynamic competitive fitness or its vulnerability when confronted with sequential, high-stakes tasks. To address this, we introduce the novel Competitive Swiss-System Dynamics (CSD) framework. CSD simulates a multi-round, sequential contest where models are dynamically paired across a curated sequence of benchmarks based on their accumulated win-loss record. And Monte Carlo Simulation (N=100,000 iterations) is used to approximate the statistically robust Expected Win Score (E[S_m]), which eliminates the noise of random pairing and early-round luck. Furthermore, we implement a Failure Sensitivity Analysis by parameterizing the per-round elimination quantity (T_k), which allows us to profile models based on their risk appetite--distinguishing between robust generalists and aggressive specialists. We demonstrate that CSD provides a more nuanced and context-aware ranking than traditional aggregate scoring and static pairwise models, representing a vital step towards risk-informed, next-generation LLM evaluation.

ByteDance-Seed ByteDance Seed
·
Dec 24, 2025 2

Field Order Should Not Matter: Permutation-Invariant Embedding Model Fine-Tuning for Structured Metadata Retrieval

We study retrieval over catalogs of structured metadata, where each record is a small schema whose fields answer different kinds of query. Embedding a record with a text encoder first serializes its fields into a string, which forces a choice of field order. We show this choice, usually treated as an implementation detail, silently controls retrieval quality once the encoder is fine-tuned. A standard fine-tune loses 7.4 nDCG@10 points when the index is rebuilt under a different field order, because it reads absolute position instead of the field labels. We propose permutation-invariant fine-tuning (PI-FT), which serializes each record under a freshly sampled field order with random field dropout, so meaning binds to the labels rather than to position. The change is about two lines in the data loader; it costs negligible in-distribution accuracy and cuts the order-change penalty to 0.2 points. We study this in the discovery of development statistics, a catalog of nearly 10,000 indicators that should be searchable in many languages by a model small enough to self-host. As AI assistants and agents increasingly mediate access to public data and statistics, this retrieval step decides whether an answer is grounded in the right indicator or series, making discoverability a precondition for disseminating data through AI. Because usage logs cannot provide training signal for indicators no one has searched, we generate the queries instead. DevDataBench is a fully LLM-generated benchmark of grounded, facet-targeted queries across 15 languages, covering every indicator for both training and evaluation. A fine-tuned 118M-parameter CPU encoder outperforms every zero-shot baseline, including text-embedding-3-large (0.707 vs.\ 0.556 nDCG@10), with the largest gains in low-resource languages. We release the benchmark, pipeline, models, and a reusable PI-FT framework.

  • 3 authors
·
Jun 28

Excess Separability: Nuisance-Controlled Residual-Stream Probing for Benchmark Contamination Detection

Benchmark contamination is diagnosed with n-gram overlap, likelihood-based membership inference, or canary strings, and each needs something usually unavailable: the training corpus, a well-chosen test statistic, or foresight at release. A recent alternative reads it off a linear probe on internal activations. We show the natural way to do this does not work, specify one that survives measurement, then find that the correction making it work carries more variance than the null it is tested against. The protocol reports a zero-sum contrast on the depth profile of probe accuracy, recentred on a level-matched placebo baseline, tested against a label-permutation null, with the reference set twice the size of the suspect set. Each choice replaces a simpler alternative we rejected on measurement. Reporting the level of excess separability rather than its shape makes the false positive rate track the size of the analyst's own control set, 0.03 to 0.99 under a true null. Contrasting against a flat depth profile rejects a true null 0.72 of the time when surface decodability rises with depth, and loses all power when it falls. On real transformers the protocol fails a test the simulations did not pose. The recentring subtracts an estimate, and the permutation null holds it fixed. Re-estimated across split seeds on four audits of contaminated checkpoints, its standard deviation is 1.30 to 1.56 times the null's own in every arm: what is subtracted to remove a bias is more variable than what it corrects. The one nominally significant result, p = 0.0075, becomes 0.0745 once that variance is propagated, and no verdict is issued. The simulations missed this because their surface key is the covariate driving item variation; on real text it is a proxy, and degrading key quality in simulation reproduces it. We add a companion measurement and a widened null. No arm shows contamination.

  • 1 authors
·
Aug 15

scDFM: Distributional Flow Matching Model for Robust Single-Cell Perturbation Prediction

A central goal in systems biology and drug discovery is to predict the transcriptional response of cells to perturbations. This task is challenging due to the noisy and sparse nature of single-cell measurements, as well as the fact that perturbations often induce population-level shifts rather than changes in individual cells. Existing deep learning methods typically assume cell-level correspondences, limiting their ability to capture such global effects. We present scDFM, a generative framework based on conditional flow matching that models the full distribution of perturbed cells conditioned on control states. By incorporating a maximum mean discrepancy (MMD) objective, our method aligns perturbed and control populations beyond cell-level correspondences. To further improve robustness to sparsity and noise, we introduce the Perturbation-Aware Differential Transformer (PAD-Transformer), a backbone architecture that leverages gene interaction graphs and differential attention to capture context-specific expression changes. Across multiple genetic and drug perturbation benchmarks, scDFM consistently outperforms prior methods, demonstrating strong generalization in both unseen and combinatorial settings. In the combinatorial setting, it reduces mean squared error by 19.6% relative to the strongest baseline. These results highlight the importance of distribution-level generative modeling for robust in silico perturbation prediction. The code is available at https://github.com/AI4Science-WestlakeU/scDFM

  • 4 authors
·
Feb 5

Fidelity Is Not Safety: Gently-Compressed LLMs Pass Every Data-Free Quality Guard Yet Invent Procedure Steps in Agentic Execution

Practitioners accept a compressed language model once it clears a stack of data-cheap quality guards: perplexity within a small factor of the original, downstream accuracy (for example MMLU) inside a confidence interval, and data-free output-fidelity signals that compare the compressed and original network's internal representations under random probe inputs. This stack has a blind spot. Across three model families, gently-compressed models clear every guard and then invent procedure steps that were never in the instructions when they run a standard operating procedure (SOP) as an agent. The effect is operator-specific: coherent low-rank (SVD) truncation induces it, and magnitude pruning matched to the same perplexity does not. One dissociation isolates the cause. The same compressed weights that CI-win a paired output-fidelity test CI-fail the invented-step canary. The governing axis is the coherence of the compression error times its rate; the magnitude of the damage does not predict it. The data-free fidelity probe is a fidelity oracle by construction, so it cannot see this axis. We characterize the blindspot and dissociation with paired confidence intervals on a pre-registered, powered canary across three architectures. Operator-specificity replicates on all three, and the perplexity-guard evasion appears where the model admits in-guard low-rank headroom. We then give a data-free screen: a two-axis statistic of the compression error (coherent-fraction and error-rate) that flags the failing builds with fixed thresholds across architectures and matches the coherence-times-rate mechanism. Perplexity, MMLU, and fidelity acceptance do not certify agent safety. Screen gently-compressed low-rank builds before agentic deployment

  • 2 authors
·
Jul 29

Amortizing Causal Sensitivity Analysis via Prior Data-Fitted Networks

Causal sensitivity analysis aims to provide bounds for causal effect estimates in the presence of unobserved confounding. However, existing methods for causal sensitivity analysis are per-instance procedures, meaning that changes to the dataset, causal query, sensitivity level, or treatment require new computation. Here, we instead present an in-context learning approach. Specifically, we propose an amortized approach to causal sensitivity analysis based on prior-data fitted networks. A key challenge is that the sensitivity bounds are not directly available when sampling training data. To address this, we develop a general prior-data construction that is applicable across the class of generalized treatment sensitivity models. Our construction involves a Lagrangian scalarization of the objective to generate training labels for the bounds through a tradeoff between causal effect min/max-imization and sensitivity model violation, which avoids model-specific analytical derivations. We further show that, under standard convexity and linearity conditions, our objective recovers the full Pareto frontier of solutions. Empirically, we demonstrate our amortized approach across various datasets, causal queries, and sensitivity levels, where our approach achieves a test-time computation that is orders of magnitude faster than per-instance methods. To the best of our knowledge, ours is the first foundation model for in-context learning for causal sensitivity analysis.

  • 5 authors
·
May 11

From Discovery to Decision: Finite-Budget Recoverability in LLM Voting

Voting over multiple LLM responses is a common primitive in test-time scaling and ensemble inference. Collecting more responses can expand the candidate pool and increase the chance that a correct answer is discovered. Under a fixed call budget, a discovered answer still needs to accumulate enough support within the remaining calls to become the final plurality winner, creating a discovery-to-decision gap. In this work, we characterize this gap through the realized vote state and remaining call budget. We derive a sharp recoverability threshold and show that, as sampling proceeds, the observed candidate set can only expand while the set of reachable endpoint winners can only contract, inducing a candidate-level conversion window. Under a specified iid response law, the same state yields exact finite-horizon endpoint probabilities. We further show that merging wrong-answer identities preserves single-call correctness and cannot improve plurality accuracy, and that the effect of redistributing wrong-answer probability depends on the realized vote state. Singleton reachability yields a gold-free exact locking certificate. For a known answer universe, its first trigger is the earliest prefix at which all admissible continuations yield the same fixed-budget output. Empirically, most discovered-but-unselected correct answers lose reachability only after discovery. In a controlled Word16 study, input permutation improves raw-plurality accuracy by 21.1 points with essentially unchanged single-call correctness. Exact locking saves 28-30% of calls at a 16-call budget while preserving every fixed-budget output.

  • 2 authors
·
Sep 30

Evaluating the Robustness of Proof Autoformalization in Lean 4

Proof autoformalization aims to translate a mathematical informal proof written in natural language into a formal proof in a formal language such as Lean~4. Several works have developed LLM-based models for proof autoformalization. However, existing evaluations have typically focused on translating well-formed informal proofs from curated datasets. We argue that a robust proof autoformalizer must remain faithful even for informal proofs that diverge from these idealized ones, and we present the first study on the robustness of proof autoformalization models. We formulate two categories of perturbations and evaluate robustness under each: a global perturbation paraphrases the informal proof in a different style, under which the formalization should remain consistent; a local perturbation alters a value, symbol, or proof step, possibly in a counterfactual way, and a robust formalization should faithfully reflect the perturbation rather than reverting to the original one or inferring a different one on its own. We build a benchmark with both perturbations on miniF2F and MATH-500, and automatically measure how stable a proof autoformalization's correctness is under global perturbations and how faithfully its output reflects local perturbations. We evaluate seven recent models, all of which are sensitive to global perturbations and mostly fail to remain faithful under local perturbations. Code and data are available via https://github.com/ucr-rai/robust-proof-autoformalization.

  • 3 authors
·
Jun 11

Mitigating Reversal Curse in Large Language Models via Semantic-aware Permutation Training

While large language models (LLMs) have achieved impressive performance across diverse tasks, recent studies showcase that causal LLMs suffer from the "reversal curse". It is a typical example that the model knows "A's father is B", but is unable to reason "B's child is A". This limitation poses a challenge to the advancement of artificial general intelligence (AGI), as it suggests a gap in the models' ability to comprehend and apply bidirectional reasoning. In this paper, we first conduct substantial evaluation and identify that the root cause of the reversal curse lies in the different word order between the training and inference stage, namely, the poor ability of causal language models to predict antecedent words within the training data. Accordingly, permutation on the training data is considered as a potential solution, since this can make the model predict antecedent words or tokens. However, previous permutation methods may disrupt complete phrases or entities, thereby posing challenges for the model to comprehend and learn from training data. To address this issue, we propose Semantic-aware Permutation Training (SPT), which addresses this issue by segmenting the training sentences into semantic units (i.e., entities or phrases) with an assistant language model and permuting these units before feeding into the model. Extensive experiments demonstrate that SPT effectively mitigates the reversal curse since the performance on reversed questions approximates that on the forward ones, and significantly advances the performance of existing works.

  • 6 authors
·
Mar 1, 2024

LeAP: Learnable Adaptive Permutation for Feature Selection in Heterogeneous and Sparse Recommender Systems

Modern industrial recommender systems rely on thousands of heterogeneous features -- ranging from low-dimensional scalars (e.g., statistical value) to high-dimensional embeddings (e.g., user-id embeddings, MLP representations) -- to achieve high-precision predictions. Given the immense computational costs associated with training, efficient feature selection is critical. However, existing methods encounter three primary bottlenecks: (1) they typically assume uniform feature dimensions or require costly mapping to a fixed size; (2) they struggle with extreme sparsity, where the majority of features (e.g., 99%+) remain at default values; and (3) traditional permutation-based approaches are computationally prohibitive in large-scale settings. To address these challenges, we propose LeAP (Learnable Adaptive Permutation), a novel, model-agnostic plug-in module for feature selection. LeAP transforms the inefficient random permutation process into a learnable mechanism, significantly accelerating the evaluation of feature importance. In addition, we introduce an adaptive regularization strategy tailored for heterogeneous dimensions and extreme sparsity, enabling superior feature importance ranking results across asymmetric input spaces. Experiments on four public recommendation datasets demonstrate that LeAP achieves state-of-the-art performance. Furthermore, LeAP has been deployed in a large-scale industrial search ranking model with over a billion daily requests and a 2TB model parameter scale. In this real-world scenario involving 12,000+ total feature dimensions, LeAP successfully identified and removed over 3,600 redundant dimensions without performance degradation, which is 2 to 10 times the ability of compared baseline methods.

  • 6 authors
·
Jun 1

Quantize by Drift: Label-Free Mixed-Precision Post-Training Quantization for Text Embedders

Mixed-precision post-training quantization needs a per-module sensitivity signal; for a text embedder the obvious one -- the retrieval quality a module costs when quantized -- needs relevance labels that deployments rarely have. We measure a label-free substitute: quantization-induced representation drift, obtained by quantizing one module, re-encoding the corpus, and recording how far the output embeddings moved from their full-precision positions. What is specific is the observable: the deployed output representation a dense retriever ranks with. Across five development embedders, configuration-level drift orders sampled mixed-precision plans against held-out retrieval quality at a macro Spearman of 0.911, the sensitivity transports across calibration corpora and retrieval domains in the usable regime, module drifts compose rank-consistently but not numerically, and relevance-derived sensitivity adds no consistent value. The method is one additive allocation under a hard packed-byte budget, with no labels and no search. On three embedders held untouched until method, baselines and hypotheses were frozen and sealed, the pre-registered directional hypothesis against the prior LieQ criterion holds (3/3 at the main budget, no collapse) and drift scores above a two-sided LieQ steelman in 2/3; but at the main budget drift is numerically lower than same-budget uniform precision on all three (-0.99, -0.85, -1.01 points), having reduced module and whole-model drift as designed. Output drift is thus a robust coarse sensitivity signal, not a universally optimal allocation objective: it avoids the catastrophic failures of the transferred signed-geometry adaptation and can remain usable at stressed budgets where uniform collapses, but fine-grained redistribution around a strong uniform operating point remains unresolved.

  • 3 authors
·
Oct 5

Measuring Calibration in Deep Learning

Overconfidence and underconfidence in machine learning classifiers is measured by calibration: the degree to which the probabilities predicted for each class match the accuracy of the classifier on that prediction. How one measures calibration remains a challenge: expected calibration error, the most popular metric, has numerous flaws which we outline, and there is no clear empirical understanding of how its choices affect conclusions in practice, and what recommendations there are to counteract its flaws. In this paper, we perform a comprehensive empirical study of choices in calibration measures including measuring all probabilities rather than just the maximum prediction, thresholding probability values, class conditionality, number of bins, bins that are adaptive to the datapoint density, and the norm used to compare accuracies to confidences. To analyze the sensitivity of calibration measures, we study the impact of optimizing directly for each variant with recalibration techniques. Across MNIST, Fashion MNIST, CIFAR-10/100, and ImageNet, we find that conclusions on the rank ordering of recalibration methods is drastically impacted by the choice of calibration measure. We find that conditioning on the class leads to more effective calibration evaluations, and that using the L2 norm rather than the L1 norm improves both optimization for calibration metrics and the rank correlation measuring metric consistency. Adaptive binning schemes lead to more stablity of metric rank ordering when the number of bins vary, and is also recommended. We open source a library for the use of our calibration measures.

  • 7 authors
·
Aug 6, 2020

The Scissors Effect: When Resize-Based Input Diversity Helps or Hurts Transfer Attacks

Input Diversity (DI), which applies random resizing and padding at each attack iteration, is a near-default ingredient of transfer-based adversarial attacks, widely assumed to improve transferability. We show this assumption is regime-dependent and, for robustly trained surrogates, often reversed. Varying only the surrogate, increasing the DI probability raises transfer success for standard surrogates but lowers it for robust ones: the two response curves separate like a pair of scissors, a pattern we call the Scissors Effect. The effect is strong and consistent on ImageNet, where blind DI costs the robust source 10.3% attack success on average across CNN, ViT, Swin, and ConvNeXt targets and across ten attacks spanning 2018-2024; it is smaller on CIFAR-10 unless DI is made aggressive. A controlled robustness-strength sweep that varies only the training budget shows the harm is graded rather than binary, crossing from beneficial to harmful already in the little-robustness regime. We trace it to gradient geometry: a resize/translation decomposition attributes roughly 67% of the harm to resize, and a direct source-target gradient-alignment measurement confirms the same resize operation improves alignment for standard surrogates but degrades it for robust ones. We summarize the regime with Local Gradient Consistency (LGC), a single input-space probe that separates the two surrogate types, and prove a bias-variance crossover theorem isolating where DI helps from where its resize bias dominates. A training-free rule (CG-DI) that disables diversity when LGC is high avoids the loss on robust surrogates while keeping DI's benefit on standard ones, positioning the Scissors Effect as a DI-specific manifestation of the broader robustness-transferability trade-off.

  • 2 authors
·
Jun 20

Where Post-Training Quantization Breaks Text Embedders: A Measured Map Across Four Embedder Families

Weight-only post-training quantization is the cheapest way to shrink a retrieval embedder, and the received advice for applying it -- protect the embedding table, allocate bits by module sensitivity, prefer a ranking-aware objective over weight reconstruction -- was carried into LLM quantization largely intact. We test that advice on retrieval embedders directly, quantizing five checkpoints from four architecture families across a grid of bit widths and group sizes, and isolating the embedding, attention and feed-forward blocks at each width. Every heuristic fails to transfer as stated. The embedding table never emerges as the dominant isolated protection priority in any family, despite being the largest tensor in several of them. Module sensitivity does not survive as a transferable ordering: at INT4/g16 the spread between modules is too small to allocate against, at INT3 the ordering becomes family-dependent and joint damage stops being the sum of its parts, and at INT2 comparable reconstruction error accompanies retention ranging from 1.3 to 65.9 percent of full precision. A cheap reconstruction proxy is useful for screening uniform bit widths but substantially less reliable for choosing which tensors to protect; its apparent strength across the whole grid is a range-extension artifact. A distilled 109M student at INT3 holds 78.04 NDCG@10 in 68.4 MB and dominates the extreme-PTQ arm of its own 0.6B teacher, 297.9 MB at 64.46, on both size and quality -- but only inside the task it was distilled for. Sizes are byte counts of files that exist rather than arithmetic estimates, and the measurement repository carries the byte provenance for every one of them.

  • 1 authors
·
Sep 13

When Load-Balancing Goes Too Far: Expert Pruning in Over-Dispersed Mixture-of-Experts Models

Expert pruning reduces the memory and serving cost of Mixture-of-Experts (MoE) models by removing low-importance experts identified by the router, assuming router probabilities provide a reliable importance signal. We observe that this assumption breaks down under over-dispersed routing, a regime associated with aggressive load-balancing during training, in which tokens are distributed nearly uniformly across experts and importance signals collapse. In this regime, perplexity does not predict downstream task accuracy: on gpt-oss-20B, the lowest-perplexity pruning configuration yields the worst mathematical reasoning, while the highest-perplexity configuration preserves it. This does not occur under standard routing (e.g., Mixtral-8x7B-Instruct), where perplexity and accuracy degrade together. Pruning under over-dispersed routing also exposes a capability trade-off in which no single scoring metric dominates: activation-aware scoring preserves mathematical reasoning but severely degrades knowledge-intensive science (an 18-point gap on GPQA), whereas frequency-based scoring exhibits the reverse. We propose Minimax Expert Score Allocation (MESA), a domain-aware method that iteratively boosts importance scores for experts serving whichever domain is currently worst-affected, minimizing worst-case domain degradation rather than average accuracy. At 25% expert pruning MESA achieves the smallest worst-case degradation across domains, outperforming activation-aware baselines on 7 of 11 benchmarks at a correspondingly reduced memory footprint, and it generalizes to gpt-oss-120B, Gemma-4-26B-A4B, and OLMoE-1B-7B. Our results indicate that over-dispersed routing is a qualitatively distinct pruning regime in which standard assumptions fail, and that recognizing it is a prerequisite for principled expert pruning of load-balanced MoE models.

  • 7 authors
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Sep 2

Perturbation Probing: A Two-Pass-per-Prompt Diagnostic for FFN Behavioral Circuits in Aligned LLMs

Perturbation probing generates task-specific causal hypotheses for FFN neurons in large language models using two forward passes per prompt and no backpropagation, followed by a one-time intervention sweep of about 150 passes amortized across all identified neurons. Across eight behavioral circuits, 13 models, and four architecture families, we identify two circuit structures that organize LLM behavior. Opposition circuits appear when RLHF suppresses a pre-training tendency. In safety refusal, about 50 neurons, or 0.014 percent of all neurons, control the refusal template; ablating them changes 80 percent of response formats on 520 AdvBench prompts while producing near-zero harmful compliance, 3 of 520 cases, all with disclaimers. Routing circuits appear for pre-training behaviors distributed through attention. For language selection, residual-stream direction injection switches English to Chinese output on 99.1 percent of 580 benchmark prompts in the 3 of 19 tested models that satisfy three observed conditions: bilingual training, FFN-to-skip signal ratio between 0.3 and 1.1, and linear representability. The same intervention fails on the other 16 models and on math, code, and factual circuits, defining the limits of directional steering. The FFN-to-skip signal ratio, computed from the same two forward passes, distinguishes the two structures and predicts the appropriate intervention. Circuit topology varies by architecture, from Qwen's concentrated FFN bottleneck to Gemma's normalization-shielded circuit. In Qwen3.5-2B, ablating 20 neurons eliminates multi-turn sycophantic capitulation, while amplifying 10 related neurons improves factual correction from 52 percent to 88 percent on 200 TruthfulQA prompts. These results show that perturbation probing offers mechanistic insight into RLHF-organized behavior and a practical toolkit for precision template-layer editing.

  • 3 authors
·
Apr 29

Sharper Bounds for ell_p Sensitivity Sampling

In large scale machine learning, random sampling is a popular way to approximate datasets by a small representative subset of examples. In particular, sensitivity sampling is an intensely studied technique which provides provable guarantees on the quality of approximation, while reducing the number of examples to the product of the VC dimension d and the total sensitivity mathfrak S in remarkably general settings. However, guarantees going beyond this general bound of mathfrak S d are known in perhaps only one setting, for ell_2 subspace embeddings, despite intense study of sensitivity sampling in prior work. In this work, we show the first bounds for sensitivity sampling for ell_p subspace embeddings for pneq 2 that improve over the general mathfrak S d bound, achieving a bound of roughly mathfrak S^{2/p} for 1leq p<2 and mathfrak S^{2-2/p} for 2<p<infty. For 1leq p<2, we show that this bound is tight, in the sense that there exist matrices for which mathfrak S^{2/p} samples is necessary. Furthermore, our techniques yield further new results in the study of sampling algorithms, showing that the root leverage score sampling algorithm achieves a bound of roughly d for 1leq p<2, and that a combination of leverage score and sensitivity sampling achieves an improved bound of roughly d^{2/p}mathfrak S^{2-4/p} for 2<p<infty. Our sensitivity sampling results yield the best known sample complexity for a wide class of structured matrices that have small ell_p sensitivity.

  • 2 authors
·
Jun 1, 2023

LLMs Contain Multitudes: How Deployment Context Reshapes Model-Level Preferences and Values

Large language models (LLMs) are increasingly characterised in recent evaluation work as having stable, model-level preference and value systems. However, accompanying robustness checks are limited to incidental prompt perturbations such as syntax variation and option reordering. This leaves open whether the measured properties survive when the surrounding task context changes, as it does in most real deployments. We test this directly across two established pairwise paradigms: ranking country preferences and eliciting utility judgements. In both, we make the deployment context -- the high-level task the model is performing while making concrete value-dependent choices -- our controlled variable, varied across framings such as writing a Reddit post or a news article. Across five LLMs and over 1.2M pairwise decisions, deployment context produces variation far larger than prompt paraphrasing and temperature controls. In country preference rankings over 15 countries, context induces widespread, statistically significant rank shifts; the aggregate Global North favouritism reported in prior work is itself context-dependent, with each model's bias shifting systematically across contexts. In utility elicitation over 50 outcomes, broad cross-category ordering is preserved, but fine-grained rankings within domains vary substantially, and cardinal exchange rates between outcomes (e.g. how many lives in one region equal one in another) shift by a factor of 2.47 at the median. Reported model-level preferences and utilities are therefore better understood as context-conditioned measurements than fixed model-level properties: safety guarantees obtained under one framing provide limited assurance in another.

  • 5 authors
·
Jun 10

Does Bielik Know What It Doesn't Know? Activation Dispersion Separates Entity Familiarity from Factual Reliability Across Model Scale

Large language models hallucinate most about entities they have never seen. We ask whether a model's activations betray entity familiarity before a single answer token is generated, and whether that signal predicts the factual reliability of the answers. On four Polish Bielik models (1.5B-11B parameters), we probe four entity domains (athletes, cities, writers, musicians), each with 42 well-known, 42 obscure-but-real, and 42 fabricated entities addressed by a one-sentence question (504 prompts per model). Two unsupervised, single-forward-pass dispersion measures over post-SwiGLU MLP activations, inverse participation ratio and spectral entropy, separate known from fabricated entities at AUROC 0.95-1.00 across all domains and scales; a supervised linear probe reaches 0.99-1.00. Both clear selection-aware permutation floors of about 0.70-0.74 (empirical p<=1e-3), survive held-out layer selection (0.93-0.99), and persist on real names (known vs. obscure-but-real: 0.96-1.00). The signal transfers across entity types (mean off-diagonal AUROC 0.92-0.99); a matched-template counterfactual shows the only large drops are template-caused, not entity-type effects, and the signal is diffuse across heads. This representational signal is already at ceiling at 1.5B, whereas behavioral factual reliability scales sharply: 0, 2, 10, and 19 of 42 known athletes are answered fully correctly by the 1.5B, 4.5B, 7B, and 11B models under a strict judge. Within known entities, separating correct from hallucinated answers is much harder (probe 0.93; dispersion no better than a first-token-entropy baseline). A five-sample semantic-entropy baseline reaches only 0.71-0.83 at 5x the inference cost. Despite this internal awareness, the models almost never abstain: an audit of 2,520 answers finds 2 refusals and 1 hedge. Entity familiarity and factual reliability are distinct phenomena on different scaling curves.

  • 1 authors
·
Jul 7

Knowledge Graph Embedding by Normalizing Flows

A key to knowledge graph embedding (KGE) is to choose a proper representation space, e.g., point-wise Euclidean space and complex vector space. In this paper, we propose a unified perspective of embedding and introduce uncertainty into KGE from the view of group theory. Our model can incorporate existing models (i.e., generality), ensure the computation is tractable (i.e., efficiency) and enjoy the expressive power of complex random variables (i.e., expressiveness). The core idea is that we embed entities/relations as elements of a symmetric group, i.e., permutations of a set. Permutations of different sets can reflect different properties of embedding. And the group operation of symmetric groups is easy to compute. In specific, we show that the embedding of many existing models, point vectors, can be seen as elements of a symmetric group. To reflect uncertainty, we first embed entities/relations as permutations of a set of random variables. A permutation can transform a simple random variable into a complex random variable for greater expressiveness, called a normalizing flow. We then define scoring functions by measuring the similarity of two normalizing flows, namely NFE. We construct several instantiating models and prove that they are able to learn logical rules. Experimental results demonstrate the effectiveness of introducing uncertainty and our model. The code is available at https://github.com/changyi7231/NFE.

  • 3 authors
·
Sep 30, 2024

What Paired Evaluations Reveal under Visual Perturbations

Robustness evaluation must examine diverse visual perturbations, while benchmarks cover only some real-world conditions and physical testing is costly. Paired evaluations link clean and perturbed predictions for the same image, capturing changes in correctness, confidence, and acceptance beyond aggregate accuracy. We investigate how this image correspondence supports two needs in robustness evaluation: interpreting paired evaluation results and prioritizing samples for physical testing. To interpret paired evaluation results, we fix both sets of prediction records and vary their correspondence within each class. We prove that classwise correct-correct counts give the same sharp bounds on lost acceptance and mean true-class probability decrease among retained-correct inputs as any feasible five-state refinement. Distinguishing persistent from changed wrong answers can further constrain accepted-error transitions, while shared correspondence can establish policy orderings left unresolved by separate cost intervals. To prioritize samples for physical testing, we retain each image's synthetic responses and rank clean-correct images by their mean true-class probability under corruption. Across 44 classifiers, testing the highest-risk 20% finds 67% and 45% of failures under mild screen and print recaptures, versus 58% and 36% for clean confidence and 60% and 37% for an equal-size natural-transformation average. With both probability averaging and an A3Rank scoring adaptation, the tested corruption set yields higher mean failure recall than the natural-transform set; differences between scores depend on the source and budget. Together, these findings show that the value of correspondence depends on the evaluation objective: classwise counts suffice for specified reliability bounds, while image-specific synthetic responses improve the allocation of physical tests within the evaluated pool.

  • 7 authors
·
Sep 27

Input-Blind Controls Produce Substantial Oracle Headroom for Layer Programs in Multiple-Choice Evaluation

Adaptive computation aims to improve language-model inference by tailoring execution to each input. For layer programs, oracle evaluations use known answers to estimate the potential gain from this flexibility, before a practical selector is available. However, a gain from selection does not by itself explain why the chosen programs help. This study examines this distinction using 32 layer-skipping and repetition programs on two models and 4,413 multiple-choice items. The analysis compares their gains over a fixed action selected without the evaluation prompt with those of input-blind perturbations at the same sites, re-evaluating selections on another prompt. With shared option order, the controls give 10.2-11.8 and 15.6-19.4 percentage points of headroom on Qwen3-4B-Base and Llama-3.1-8B, exceeding the real programs' 9.0 and 10.1 in all three random-direction draws per model. They match answer-change rate only, and the ordering depends on the menu: in post hoc comparisons, real programs lead on Llama's repeat-only menu in every draw. A smaller KL-calibrated comparison, including an input-dependent control, favours real programs in point estimate, with inconclusive corrected tests. Fixed letter offsets produce headroom of similar scale. Rotating options sharply reduces both families' headroom, while leaving positive real-minus-control differences of 1.4-2.3 and 3.7-4.5 points; their magnitudes and statistical support depend on further adjustments and the reference. A supplementary generated-answer test finds that search-selected programs keep a 26.0-point advantage over programs selected for other problems after rewording, without a placebo comparison. These results show that substantial headroom can persist across prompts with shared option order without establishing a benefit specific to the selected layer computation; neither ordering against these controls identifies that benefit.

  • 2 authors
·
Oct 6

Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models

Large language models (LLMs) have transformed natural language processing, but their reliable deployment requires effective uncertainty quantification (UQ). Existing UQ methods are often heuristic and lack a probabilistic foundation. This paper begins by providing a theoretical justification for the role of perturbations in UQ for LLMs. We then introduce a dual random walk perspective, modeling input-output pairs as two Markov chains with transition probabilities defined by semantic similarity. Building on this, we propose a fully probabilistic framework based on an inverse model, which quantifies uncertainty by evaluating the diversity of the input space conditioned on a given output through systematic perturbations. Within this framework, we define a new uncertainty measure, Inv-Entropy. A key strength of our framework is its flexibility: it supports various definitions of uncertainty measures, embeddings, perturbation strategies, and similarity metrics. We also propose GAAP, a perturbation algorithm based on genetic algorithms, which enhances the diversity of sampled inputs. In addition, we introduce a new evaluation metric, Temperature Sensitivity of Uncertainty (TSU), which directly assesses uncertainty without relying on correctness as a proxy. Extensive experiments demonstrate that Inv-Entropy outperforms existing semantic UQ methods. The code to reproduce the results can be found at https://github.com/UMDataScienceLab/Uncertainty-Quantification-for-LLMs.

  • 5 authors
·
Jun 11, 2025

DRIFT: Disentangled Responsive-Invariant Flow Transport for Single-Cell Perturbation Prediction

Predicting cellular responses to perturbations is a central problem in cellular biology, with broad applications in systems biology and drug discovery. This task is challenging because cellular responses can be complex and cell-state dependent, intrinsic cell-to-cell variability can be confounded with perturbation effects, and destructive single-cell RNA sequencing precludes paired measurements of the same cell before and after treatment. Flow matching transports control cells to perturbed states flexibly, but acting on the full cell state can confound perturbation effects with pre-existing cell-to-cell variability. Disentangled approaches separate responsive from invariant components, but model perturbations through prescribed mechanisms, such as latent shifts or graph edits, limiting their flexibility. We address both limitations in a unified framework. A variational encoder disentangles each cell into an invariant block, capturing state unaffected by the perturbation, and a responsive block, capturing state it changes, through conditional priors and an information-theoretic invariance constraint. Conditional flow matching transports only the responsive block, conditioned on the perturbation and invariant state, yielding a flexible, data-driven model of perturbation effects without confounding pre-existing variability. Across several benchmarks, our method outperforms the strongest published method in settings involving combinatorial and unseen perturbation prediction.

  • 3 authors
·
Sep 27

GSM-SEM: Benchmark and Framework for Generating Semantically Variant Augmentations

Benchmarks like GSM8K are popular measures of mathematical reasoning, but leaderboard gains can overstate true capability due to memorization of fixed test sets. Most robustness variants apply surface-level perturbations (paraphrases, renamings, number swaps, distractors) that largely preserve the underlying facts, and static releases can themselves become memorization targets over time. We introduce GSM-SEM, a reusable and stochastic framework for generating semantically diverse benchmark variants with substantially higher semantic variance than prior approaches. GSM-SEM perturbs problem statements by modifying entities, attributes, and/or relationships, frequently altering underlying facts and requiring models to recompute solutions under new conditions, while constraining generation to preserve the original calculations/answer and approximate problem difficulty. GSM-SEM generates fresh variants on each run without requiring re-annotation, reducing reliance on static public benchmarks for evaluation and thereby lowering the bias of memorization. We apply GSM-SEM on GSM8K and two existing variation suites (GSM-Symbolic and GSM-Plus), producing GSM8K-SEM, GSM-Symbolic-SEM, and GSM-Plus-SEM. Evaluating 14 SOTA LLMs, we observe consistent performance drops with larger decline when semantic perturbations are coupled with symbolic/plus variations (average drop rate 28% in maximum strictness configuration of GSM-SEM). We publicly release the three SEM variants as fully human-validated datasets. Finally, to demonstrate applicability beyond GSM-style math problems, we apply GSM-SEM to additional benchmarks including BigBenchHard, LogicBench, and NLR-BIRD.

  • 14 authors
·
May 25

Quantization Undoes Alignment: Bias Emergence in Compressed LLMs Across Models and Precision Levels

Large Language Models are routinely compressed via post-training quantization to reduce inference costs and memory footprint for cloud and edge deployment, yet the impact of this compression on model quality remains poorly understood. Existing studies typically compare only two conditions (full-precision vs. a single quantized variant), rely on aggregate bias metrics, and evaluate a single model family, making it impossible to distinguish gradual degradation from threshold-dependent safety failures. We conduct a controlled empirical study of three instruction-tuned models (Qwen2.5-7B, Mistral-7B, Phi-3.5-mini) at five precision levels (BF16 through 3-bit) on 12,148 BBQ bias benchmark items across 5 random seeds, totaling 911,100 inference records. Our results reveal that 3-bit quantization causes 6-21% of previously unbiased items to develop new stereotypical behaviors, following a clear dose-response pattern confirmed via logistic regression, while models' willingness to select "unknown" answers declines by 17.4%. Crucially, these item-level changes are invisible to standard quality metrics: perplexity increases by less than 0.5% at 8-bit and under 3% at 4-bit across all three models, yet 2.5-5.6% of items already develop new biases at 4-bit. These findings demonstrate that aggregate evaluation metrics systematically miss fairness-critical degradation, underscoring the need for quality-aware compression protocols that explicitly test for bias emergence before deployment.

  • 2 authors
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May 1

Why Gated DeltaNet Survives 4-Bit Quantization: NVFP4 W4A4 for the Recurrent Half of a Hybrid 27B LLM

Hybrid LLMs pair softmax attention with linear-attention layers such as Gated DeltaNet (GDN), whose recurrent state summarizes the context in fixed size. Early community 4-bit quantizations of Qwen3.8-27B (48 GDN layers, 16 attention layers) left the GDN block in 8- or 16-bit precision -- especially its decay and write-strength gates -- on the intuition that errors in a recurrence accumulate over long contexts. We test that intuition by building Minima: NVFP4 W4A4 on all 496 linear layers, GDN included. Across perplexity at 4K/32K, MMLU-Pro, GSM8K, AIME'25, GPQA-Diamond, LiveCodeBench, and RULER retrieval to 64K, Minima matches BF16 within seed noise (5-task average -0.52) while being the smallest (17.5 GiB) and fastest-prefill (+14-19%) recipe we compare, and its 32K perplexity gap shrinks with position. A four-part mechanism study explains why: (i) NVFP4's 16-element block scaling localizes the residual stream's extreme outliers, equalizing activation error across layer roles; (ii) the supposedly fragile gate projections are the least sensitive -- softplus/exponential and sigmoid parameterizations compress ~11% GEMM error to ~2% output error; (iii) the delta-rule recurrence holds injected noise at a flat plateau over 32K tokens and forgets a state impulse within hundreds of steps, because each write overwrites the state along the current key direction; (iv) the per-token quantization cost washes out with context instead of compounding. We also repair a global-scale mismatch that arises when per-module-calibrated NVFP4 checkpoints are served by kernels that fuse those modules into one GEMM, and show calibrated FP8 KV-cache scales are performance-free. The result: a practical recipe -- quantize everything, ship KV scales -- and a mechanistic account of why the recurrent half of a hybrid LLM is the easy half to quantize. Checkpoint: https://huggingface.co/minima-ai/mnma_qwen3.8_27b_nvfp4

minima-ai Minima AI
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Sep 2 2

ProphetFuzz: Fully Automated Prediction and Fuzzing of High-Risk Option Combinations with Only Documentation via Large Language Model

Vulnerabilities related to option combinations pose a significant challenge in software security testing due to their vast search space. Previous research primarily addressed this challenge through mutation or filtering techniques, which inefficiently treated all option combinations as having equal potential for vulnerabilities, thus wasting considerable time on non-vulnerable targets and resulting in low testing efficiency. In this paper, we utilize carefully designed prompt engineering to drive the large language model (LLM) to predict high-risk option combinations (i.e., more likely to contain vulnerabilities) and perform fuzz testing automatically without human intervention. We developed a tool called ProphetFuzz and evaluated it on a dataset comprising 52 programs collected from three related studies. The entire experiment consumed 10.44 CPU years. ProphetFuzz successfully predicted 1748 high-risk option combinations at an average cost of only \$8.69 per program. Results show that after 72 hours of fuzzing, ProphetFuzz discovered 364 unique vulnerabilities associated with 12.30\% of the predicted high-risk option combinations, which was 32.85\% higher than that found by state-of-the-art in the same timeframe. Additionally, using ProphetFuzz, we conducted persistent fuzzing on the latest versions of these programs, uncovering 140 vulnerabilities, with 93 confirmed by developers and 21 awarded CVE numbers.

  • 5 authors
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Sep 1, 2024

Surgical Refusal Ablation: Disentangling Safety from Intelligence via Concept-Guided Spectral Cleaning

Safety-aligned language models systematically refuse harmful requests. While activation steering can modulate refusal, ablating the raw "refusal vector" calculated from contrastive harmful and harmless prompts often causes collateral damage and distribution drift. We argue this degradation occurs because the raw vector is polysemantic, entangling the refusal signal with core capability circuits and linguistic style. We introduce Surgical Refusal Ablation (SRA) to distill these steering directions. SRA constructs a registry of independent Concept Atoms representing protected capabilities and stylistic confounds, then uses ridge-regularized spectral residualization to orthogonalize the refusal vector against these directions. This yields a clean refusal direction that targets refusal-relevant structure while minimizing disruption to the model's semantic geometry. Across five models (Qwen3-VL and Ministral series), SRA achieves deep refusal reduction (0-2%) with negligible perplexity impact on Wikitext-2 (mean delta PPL approx. 0.02) and minimal distribution drift. Notably, standard ablation on Qwen3-VL-4B induces severe drift (first-token KL = 2.088), whereas SRA maintains the original distribution (KL = 0.044) while achieving the same 0% refusal rate. Using teacher-forced perplexity on GSM8K and MBPP as a high-resolution capability proxy, we show SRA preserves math and code distributions. These results suggest that common "model damage" is often "Ghost Noise," defined as the spectral bleeding of the dirty refusal direction into capability subspaces.

  • 1 authors
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Jan 12

Training-Free Token Pruning via Zeroth-Order Gradient Estimation in Vision-Language Models

Large Vision-Language Models (VLMs) enable strong multimodal reasoning but incur heavy inference costs from redundant visual tokens. Token pruning alleviates this issue, yet existing approaches face limitations. Attention-based methods rely on raw attention scores, which are often unstable across layers and heads and can lead to redundant selections. Diversity-based methods improve robustness by selecting tokens far apart in feature space but risk dropping regions needed for accurate prediction. We propose \ours, a training-free framework built on a simple intuition: tokens with higher sensitivity are more likely to influence the model's output, and they should also capture complementary visual cues rather than overlapping information. To achieve this, we estimate token sensitivity using zeroth-order perturbations at the projection layer, a shallow and computationally light component of the model. This approach measures how small random perturbations affect the projection outputs, allowing us to approximate each token's influence through lightweight forward passes without backpropagation. Extensive experiments across multiple VLMs and benchmarks show that \ours consistently outperforms prior methods, pruning up to 94.4\% of tokens while maintaining accuracy and significantly improving efficiency, achieving up to 2.30x faster end-to-end inference over the baseline.

  • 6 authors
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Sep 29, 2025

Supervised Learning Has a Necessary Geometric Blind Spot: Theory, Consequences, and Minimal Repair

PGD adversarial training, the standard robustness method, can reduce Jacobian Frobenius norm yet worsen clean-input geometry (e.g., TDI 1.336 vs. ERM 1.093). We show this is not an implementation artifact but a theorem-level consequence of supervised learning. We prove that any encoder minimizing supervised loss must retain non-zero sensitivity along directions correlated with training labels, including directions that are nuisance at test time. This holds across proper scoring rules, architectures, and dataset sizes. We call this the geometric blind spot of supervised learning. This theorem unifies four empirical phenomena often treated separately: non-robust features, texture bias, corruption fragility, and the robustness-accuracy tradeoff. It also explains why suppressing sensitivity in one adversarial direction can redistribute sensitivity elsewhere. We introduce Trajectory Deviation Index (TDI), a diagnostic of geometric isotropy. Unlike CKA, intrinsic dimension, or Jacobian Frobenius norm alone, TDI captures the failure mode above. In our experiments, PGD attains low Frobenius norm but high TDI, while PMH attains the lowest TDI with one additional training term and no architectural changes. Across seven tasks, BERT/SST-2, and ImageNet ViT-B/16 (backbone family underlying CLIP/DINO/SAM), the blind spot is measurable and repairable. It appears at foundation-model scale, worsens with model scale and task-specific fine-tuning, and is substantially reduced by PMH. PMH also leads on non-Gaussian corruption types (blur/brightness/contrast) without corruption-specific training.

  • 1 authors
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Apr 26 1