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Oct 16

XAI-CLIP: ROI-Guided Perturbation Framework for Explainable Medical Image Segmentation in Multimodal Vision-Language Models

Medical image segmentation is a critical component of clinical workflows, enabling accurate diagnosis, treatment planning, and disease monitoring. However, despite the superior performance of transformer-based models over convolutional architectures, their limited interpretability remains a major obstacle to clinical trust and deployment. Existing explainable artificial intelligence (XAI) techniques, including gradient-based saliency methods and perturbation-based approaches, are often computationally expensive, require numerous forward passes, and frequently produce noisy or anatomically irrelevant explanations. To address these limitations, we propose XAI-CLIP, an ROI-guided perturbation framework that leverages multimodal vision-language model embeddings to localize clinically meaningful anatomical regions and guide the explanation process. By integrating language-informed region localization with medical image segmentation and applying targeted, region-aware perturbations, the proposed method generates clearer, boundary-aware saliency maps while substantially reducing computational overhead. Experiments conducted on the FLARE22 and CHAOS datasets demonstrate that XAI-CLIP achieves up to a 60\% reduction in runtime, a 44.6\% improvement in dice score, and a 96.7\% increase in Intersection-over-Union for occlusion-based explanations compared to conventional perturbation methods. Qualitative results further confirm cleaner and more anatomically consistent attribution maps with fewer artifacts, highlighting that the incorporation of multimodal vision-language representations into perturbation-based XAI frameworks significantly enhances both interpretability and efficiency, thereby enabling transparent and clinically deployable medical image segmentation systems.

  • 5 authors
·
Jan 31

Evaluating the Effectiveness and Robustness of Visual Similarity-based Phishing Detection Models

Phishing attacks pose a significant threat to Internet users, with cybercriminals elaborately replicating the visual appearance of legitimate websites to deceive victims. Visual similarity-based detection systems have emerged as an effective countermeasure, but their effectiveness and robustness in real-world scenarios have been underexplored. In this paper, we comprehensively scrutinize and evaluate the effectiveness and robustness of popular visual similarity-based anti-phishing models using a large-scale dataset of 451k real-world phishing websites. Our analyses of the effectiveness reveal that while certain visual similarity-based models achieve high accuracy on curated datasets in the experimental settings, they exhibit notably low performance on real-world datasets, highlighting the importance of real-world evaluation. Furthermore, we find that the attackers evade the detectors mainly in three ways: (1) directly attacking the model pipelines, (2) mimicking benign logos, and (3) employing relatively simple strategies such as eliminating logos from screenshots. To statistically assess the resilience and robustness of existing models against adversarial attacks, we categorize the strategies attackers employ into visible and perturbation-based manipulations and apply them to website logos. We then evaluate the models' robustness using these adversarial samples. Our findings reveal potential vulnerabilities in several models, emphasizing the need for more robust visual similarity techniques capable of withstanding sophisticated evasion attempts. We provide actionable insights for enhancing the security of phishing defense systems, encouraging proactive actions.

  • 7 authors
·
May 29, 2024

Rethinking Architecture Selection in Differentiable NAS

Differentiable Neural Architecture Search is one of the most popular Neural Architecture Search (NAS) methods for its search efficiency and simplicity, accomplished by jointly optimizing the model weight and architecture parameters in a weight-sharing supernet via gradient-based algorithms. At the end of the search phase, the operations with the largest architecture parameters will be selected to form the final architecture, with the implicit assumption that the values of architecture parameters reflect the operation strength. While much has been discussed about the supernet's optimization, the architecture selection process has received little attention. We provide empirical and theoretical analysis to show that the magnitude of architecture parameters does not necessarily indicate how much the operation contributes to the supernet's performance. We propose an alternative perturbation-based architecture selection that directly measures each operation's influence on the supernet. We re-evaluate several differentiable NAS methods with the proposed architecture selection and find that it is able to extract significantly improved architectures from the underlying supernets consistently. Furthermore, we find that several failure modes of DARTS can be greatly alleviated with the proposed selection method, indicating that much of the poor generalization observed in DARTS can be attributed to the failure of magnitude-based architecture selection rather than entirely the optimization of its supernet.

  • 5 authors
·
Aug 9, 2021

Masked Thought: Simply Masking Partial Reasoning Steps Can Improve Mathematical Reasoning Learning of Language Models

In reasoning tasks, even a minor error can cascade into inaccurate results, leading to suboptimal performance of large language models in such domains. Earlier fine-tuning approaches sought to mitigate this by leveraging more precise supervisory signals from human labeling, larger models, or self-sampling, although at a high cost. Conversely, we develop a method that avoids external resources, relying instead on introducing perturbations to the input. Our training approach randomly masks certain tokens within the chain of thought, a technique we found to be particularly effective for reasoning tasks. When applied to fine-tuning with GSM8K, this method achieved a 5% improvement in accuracy over standard supervised fine-tuning with a few codes modified and no additional labeling effort. Furthermore, it is complementary to existing methods. When integrated with related data augmentation methods, it leads to an average improvement of 3% improvement in GSM8K accuracy and 1% improvement in MATH accuracy across five datasets of various quality and size, as well as two base models. We further investigate the mechanisms behind this improvement through case studies and quantitative analysis, suggesting that our approach may provide superior support for the model in capturing long-distance dependencies, especially those related to questions. This enhancement could deepen understanding of premises in questions and prior steps. Our code is available at Github.

  • 9 authors
·
Mar 4, 2024

Hallucinations in Neural Automatic Speech Recognition: Identifying Errors and Hallucinatory Models

Hallucinations are a type of output error produced by deep neural networks. While this has been studied in natural language processing, they have not been researched previously in automatic speech recognition. Here, we define hallucinations in ASR as transcriptions generated by a model that are semantically unrelated to the source utterance, yet still fluent and coherent. The similarity of hallucinations to probable natural language outputs of the model creates a danger of deception and impacts the credibility of the system. We show that commonly used metrics, such as word error rates, cannot differentiate between hallucinatory and non-hallucinatory models. To address this, we propose a perturbation-based method for assessing the susceptibility of an automatic speech recognition (ASR) model to hallucination at test time, which does not require access to the training dataset. We demonstrate that this method helps to distinguish between hallucinatory and non-hallucinatory models that have similar baseline word error rates. We further explore the relationship between the types of ASR errors and the types of dataset noise to determine what types of noise are most likely to create hallucinatory outputs. We devise a framework for identifying hallucinations by analysing their semantic connection with the ground truth and their fluency. Finally, we discover how to induce hallucinations with a random noise injection to the utterance.

  • 2 authors
·
Jan 3, 2024

Speech-Audio Compositional Attacks on Multimodal LLMs and Their Mitigation with SALMONN-Guard

Recent progress in large language models (LLMs) has enabled understanding of both speech and non-speech audio, but exposing new safety risks emerging from complex audio inputs that are inadequately handled by current safeguards. We introduce SACRED-Bench (Speech-Audio Composition for RED-teaming) to evaluate the robustness of LLMs under complex audio-based attacks. Unlike existing perturbation-based methods that rely on noise optimization or white-box access, SACRED-Bench exploits speech-audio composition mechanisms. SACRED-Bench adopts three mechanisms: (a) speech overlap and multi-speaker dialogue, which embeds harmful prompts beneath or alongside benign speech; (b) speech-audio mixture, which imply unsafe intent via non-speech audio alongside benign speech or audio; and (c) diverse spoken instruction formats (open-ended QA, yes/no) that evade text-only filters. Experiments show that, even Gemini 2.5 Pro, the state-of-the-art proprietary LLM, still exhibits 66% attack success rate in SACRED-Bench test set, exposing vulnerabilities under cross-modal, speech-audio composition attacks. To bridge this gap, we propose SALMONN-Guard, a safeguard LLM that jointly inspects speech, audio, and text for safety judgments, reducing attack success down to 20%. Our results highlight the need for audio-aware defenses for the safety of multimodal LLMs. The benchmark and SALMONN-Guard checkpoints can be found at https://huggingface.co/datasets/tsinghua-ee/SACRED-Bench. Warning: this paper includes examples that may be offensive or harmful.

  • 9 authors
·
Nov 13, 2025

Efficient Hallucination Detection: Adaptive Bayesian Estimation of Semantic Entropy with Guided Semantic Exploration

Large language models (LLMs) have achieved remarkable success in various natural language processing tasks, yet they remain prone to generating factually incorrect outputs known as hallucinations. While recent approaches have shown promise for hallucination detection by repeatedly sampling from LLMs and quantifying the semantic inconsistency among the generated responses, they rely on fixed sampling budgets that fail to adapt to query complexity, resulting in computational inefficiency. We propose an Adaptive Bayesian Estimation framework for Semantic Entropy with Guided Semantic Exploration, which dynamically adjusts sampling requirements based on observed uncertainty. Our approach employs a hierarchical Bayesian framework to model the semantic distribution, enabling dynamic control of sampling iterations through variance-based thresholds that terminate generation once sufficient certainty is achieved. We also develop a perturbation-based importance sampling strategy to systematically explore the semantic space. Extensive experiments on four QA datasets demonstrate that our method achieves superior hallucination detection performance with significant efficiency gains. In low-budget scenarios, our approach requires about 50% fewer samples to achieve comparable detection performance to existing methods, while delivers an average AUROC improvement of 12.6% under the same sampling budget.

  • 8 authors
·
Mar 23

To Adapt or not to Adapt, Rethinking the Value of Medical Knowledge-Aware Large Language Models

BACKGROUND: Recent studies have shown that domain-adapted large language models (LLMs) do not consistently outperform general-purpose counterparts on standard medical benchmarks, raising questions about the need for specialized clinical adaptation. METHODS: We systematically compare general and clinical LLMs on a diverse set of multiple choice clinical question answering tasks in English and Spanish. We introduce a perturbation based evaluation benchmark that probes model robustness, instruction following, and sensitivity to adversarial variations. Our evaluation includes, one-step and two-step question transformations, multi prompt testing and instruction guided assessment. We analyze a range of state-of-the-art clinical models and their general-purpose counterparts, focusing on Llama 3.1-based models. Additionally, we introduce Marmoka, a family of lightweight 8B-parameter clinical LLMs for English and Spanish, developed via continual domain-adaptive pretraining on medical corpora and instructions. RESULTS: The experiments show that clinical LLMs do not consistently outperform their general purpose counterparts on English clinical tasks, even under the proposed perturbation based benchmark. However, for the Spanish subsets the proposed Marmoka models obtain better results compared to Llama. CONCLUSIONS: Our results show that, under current short-form MCQA benchmarks, clinical LLMs offer only marginal and unstable improvements over general-purpose models in English, suggesting that existing evaluation frameworks may be insufficient to capture genuine medical expertise. We further find that both general and clinical models exhibit substantial limitations in instruction following and strict output formatting. Finally, we demonstrate that robust medical LLMs can be successfully developed for low-resource languages such as Spanish, as evidenced by the Marmoka models.

  • 5 authors
·
Apr 7

Pixel Sentence Representation Learning

Pretrained language models are long known to be subpar in capturing sentence and document-level semantics. Though heavily investigated, transferring perturbation-based methods from unsupervised visual representation learning to NLP remains an unsolved problem. This is largely due to the discreteness of subword units brought by tokenization of language models, limiting small perturbations of inputs to form semantics-preserved positive pairs. In this work, we conceptualize the learning of sentence-level textual semantics as a visual representation learning process. Drawing from cognitive and linguistic sciences, we introduce an unsupervised visual sentence representation learning framework, employing visually-grounded text perturbation methods like typos and word order shuffling, resonating with human cognitive patterns, and enabling perturbation to texts to be perceived as continuous. Our approach is further bolstered by large-scale unsupervised topical alignment training and natural language inference supervision, achieving comparable performance in semantic textual similarity (STS) to existing state-of-the-art NLP methods. Additionally, we unveil our method's inherent zero-shot cross-lingual transferability and a unique leapfrogging pattern across languages during iterative training. To our knowledge, this is the first representation learning method devoid of traditional language models for understanding sentence and document semantics, marking a stride closer to human-like textual comprehension. Our code is available at https://github.com/gowitheflow-1998/Pixel-Linguist

  • 10 authors
·
Feb 12, 2024

Feature-Selective Representation Misdirection for Machine Unlearning

As large language models (LLMs) are increasingly adopted in safety-critical and regulated sectors, the retention of sensitive or prohibited knowledge introduces escalating risks, ranging from privacy leakage to regulatory non-compliance to to potential misuse, and so on. Recent studies suggest that machine unlearning can help ensure deployed models comply with evolving legal, safety, and governance requirements. However, current unlearning techniques assume clean separation between forget and retain datasets, which is challenging in operational settings characterized by highly entangled distributions. In such scenarios, perturbation-based methods often degrade general model utility or fail to ensure safety. To address this, we propose Selective Representation Misdirection for Unlearning (SRMU), a novel principled activation-editing framework that enforces feature-aware and directionally controlled perturbations. Unlike indiscriminate model weights perturbations, SRMU employs a structured misdirection vector with an activation importance map. The goal is to allow SRMU selectively suppresses harmful representations while preserving the utility on benign ones. Experiments are conducted on the widely used WMDP benchmark across low- and high-entanglement configurations. Empirical results reveal that SRMU delivers state-of-the-art unlearning performance with minimal utility losses, and remains effective under 20-30\% overlap where existing baselines collapse. SRMU provides a robust foundation for safety-driven model governance, privacy compliance, and controlled knowledge removal in the emerging LLM-based applications. We release the replication package at https://figshare.com/s/d5931192a8824de26aff.

  • 4 authors
·
Dec 17, 2025

Aging-Aware Online Distributed Scheduling for Lifecycle Carbon Reduction in Geo-Distributed Data Centers

The rapid proliferation of data centers (DCs), driven by cloud computing and artificial intelligence (AI), has led to massive energy demand and carbon emissions, posing significant sustainability challenges. Carbon-aware optimization in geographically distributed data centers has been widely studied. Most existing approaches mainly focus on operational carbon emissions from server usage. However, existing literature often ignores workload-induced thermal stress, which accelerates nonlinear hardware degradation. This leads to more frequent server replacements and ultimately increases embodied carbon emissions. To address these limitations, we propose a comprehensive carbon life-cycle modeling framework for distributed data centers. Apart from operational carbon emissions, this work combines workload scheduling with a utilization-dependent exponential aging model to evaluate long-term carbon costs from server degradation. In order to solve the proposed optimization model in an online and privacy-preserving manner, an enhanced Lyapunov framework with time-varying queue shifting (TVQS) is first introduced to handle system uncertainties. Then, a zero-sum perturbation-based alternating direction method of multipliers (ZSP-ADMM) framework is developed to enable distributed coordination across geographically separated data centers while protecting locally exchanged workload information. Simulation results demonstrate that the proposed approach achieves up to 13.0% lower carbon emissions and 12.6% lower operational costs compared with benchmarks.

  • 6 authors
·
Sep 29

Are Large Language Models Post Hoc Explainers?

Large Language Models (LLMs) are increasingly used as powerful tools for a plethora of natural language processing (NLP) applications. A recent innovation, in-context learning (ICL), enables LLMs to learn new tasks by supplying a few examples in the prompt during inference time, thereby eliminating the need for model fine-tuning. While LLMs have been utilized in several applications, their applicability in explaining the behavior of other models remains relatively unexplored. Despite the growing number of new explanation techniques, many require white-box access to the model and/or are computationally expensive, highlighting a need for next-generation post hoc explainers. In this work, we present the first framework to study the effectiveness of LLMs in explaining other predictive models. More specifically, we propose a novel framework encompassing multiple prompting strategies: i) Perturbation-based ICL, ii) Prediction-based ICL, iii) Instruction-based ICL, and iv) Explanation-based ICL, with varying levels of information about the underlying ML model and the local neighborhood of the test sample. We conduct extensive experiments with real-world benchmark datasets to demonstrate that LLM-generated explanations perform on par with state-of-the-art post hoc explainers using their ability to leverage ICL examples and their internal knowledge in generating model explanations. On average, across four datasets and two ML models, we observe that LLMs identify the most important feature with 72.19% accuracy, opening up new frontiers in explainable artificial intelligence (XAI) to explore LLM-based explanation frameworks.

  • 5 authors
·
Oct 9, 2023

The Test Oracle Problem in Synthetic LLM-as-Judge Corpora: Disappearance, Distortion and a Validation Protocol

Studies of bias in LLM-as-judge systems typically build synthetic corpora by prompting an LLM to generate a hallucinated answer to pair with a factual one, then presenting both to a judge. We report a case in which this generation step silently failed, and use it to argue that the failure mode is structural rather than incidental. In a multilingual (Turkish/English) faithfulness-judgment corpus, a decoding-budget parameter shared between judging and generation calls truncated one producer's hallucinated answers to a few words. The resulting items produced a large, statistically robust effect: a 32-point cross-lingual collapse in one judge's selection accuracy, replicated from N=50 to N=500, explained by a three-layer mechanistic account, and confirmed by a controlled producer-swap experiment, none of which was real. The effect vanished to ceiling once the shared parameter was corrected, and only manual reading of the raw generations, not any aggregate statistical check, exposed the fault. A second measured bias (Markdown-formatting preference) was not fabricated but distorted by the same fault, its magnitude and in one case its sign shifting with stimulus length, a mode aggregate metrics cannot distinguish from the first. We frame the underlying vulnerability using the test oracle problem: corpora whose negative examples are LLM-generated carry no mechanical way to verify item integrity, while corpora built by deterministic perturbation of a gold answer carry an item-level oracle for free. A positive control supports this claim directly: an analogous fault injected into a minimal perturbation-based corpus is caught with 100% accuracy by a zero-cost, zero-human gold-to-negative string comparison. We close with a validation protocol, derived from our own case, for analysts working in the oracle-less regime that we argue describes most contemporary multilingual LLM-as-judge corpora.

  • 1 authors
·
Jul 14

Input-Conditioned Search for Efficient Test-Time Scaling of Recursive Reasoners

People often tackle difficult problems by thinking more deeply or exploring more possibilities. Similarly, recursive reasoners, which reason by repeatedly applying a learned update rule to latent states, can also scale inference through more updates (depth) or additional trajectories generated by perturbing latent states (width). When people hit a dead end in their thinking, they may step back and approach the problem from a fresh angle. However, neither depth scaling nor perturbation-based width scaling of recursive reasoners can reliably achieve this: both may converge to incorrect attractors. To address this, we propose to explore diverse reasoning traces by applying different update maps to the same latent state, without any additional training. We realize this idea through Input-Conditioned Search (ICS), which searches over input conditions to induce alternative update maps from the pretrained reasoner. Across six reasoning tasks, ICS achieves the highest mean accuracy, while requiring up to two orders of magnitude fewer model FLOPs than the evaluated scaling baselines. Controlled experiments confirm that ICS can redirect trajectories from the same state. Our theoretical analysis and rigorous numerical verification also confirm that ICS can locally eliminate incorrect attracting fixed points. Together, these findings establish ICS as an effective axis for efficient test-time scaling and motivate further research on shaping recursive reasoning during training and at test time.

  • 10 authors
·
Oct 12

The Why Behind the Action: Unveiling Internal Drivers via Agentic Attribution

Large Language Model (LLM)-based agents are widely used in real-world applications such as customer service, web navigation, and software engineering. As these systems become more autonomous and are deployed at scale, understanding why an agent takes a particular action becomes increasingly important for accountability and governance. However, existing research predominantly focuses on failure attribution to localize explicit errors in unsuccessful trajectories, which is insufficient for explaining the reason behind agent behaviors. To bridge this gap, we propose a novel framework for general agentic attribution, designed to identify the internal factors driving agent actions regardless of the task outcome. Our framework operates hierarchically to manage the complexity of agent interactions. Specifically, at the component level, we employ temporal likelihood dynamics to identify critical interaction steps; then at the sentence level, we refine this localization using perturbation-based analysis to isolate the specific textual evidence. We validate our framework across a diverse suite of agentic scenarios, including standard tool use and subtle reliability risks like memory-induced bias. Experimental results demonstrate that the proposed framework reliably pinpoints pivotal historical events and sentences behind the agent behavior, offering a critical step toward safer and more accountable agentic systems. Codes are available at https://github.com/AI45Lab/AgentDoG.

  • 13 authors
·
Feb 4

PFGM++: Unlocking the Potential of Physics-Inspired Generative Models

We introduce a new family of physics-inspired generative models termed PFGM++ that unifies diffusion models and Poisson Flow Generative Models (PFGM). These models realize generative trajectories for N dimensional data by embedding paths in N{+}D dimensional space while still controlling the progression with a simple scalar norm of the D additional variables. The new models reduce to PFGM when D{=}1 and to diffusion models when D{to}infty. The flexibility of choosing D allows us to trade off robustness against rigidity as increasing D results in more concentrated coupling between the data and the additional variable norms. We dispense with the biased large batch field targets used in PFGM and instead provide an unbiased perturbation-based objective similar to diffusion models. To explore different choices of D, we provide a direct alignment method for transferring well-tuned hyperparameters from diffusion models (D{to} infty) to any finite D values. Our experiments show that models with finite D can be superior to previous state-of-the-art diffusion models on CIFAR-10/FFHQ 64{times}64 datasets, with FID scores of 1.91/2.43 when D{=}2048/128. In class-conditional setting, D{=}2048 yields current state-of-the-art FID of 1.74 on CIFAR-10. In addition, we demonstrate that models with smaller D exhibit improved robustness against modeling errors. Code is available at https://github.com/Newbeeer/pfgmpp

  • 6 authors
·
Feb 8, 2023

Interpreting Object-level Foundation Models via Visual Precision Search

Advances in multimodal pre-training have propelled object-level foundation models, such as Grounding DINO and Florence-2, in tasks like visual grounding and object detection. However, interpreting these models\' decisions has grown increasingly challenging. Existing interpretable attribution methods for object-level task interpretation have notable limitations: (1) gradient-based methods lack precise localization due to visual-textual fusion in foundation models, and (2) perturbation-based methods produce noisy saliency maps, limiting fine-grained interpretability. To address these, we propose a Visual Precision Search method that generates accurate attribution maps with fewer regions. Our method bypasses internal model parameters to overcome attribution issues from multimodal fusion, dividing inputs into sparse sub-regions and using consistency and collaboration scores to accurately identify critical decision-making regions. We also conducted a theoretical analysis of the boundary guarantees and scope of applicability of our method. Experiments on RefCOCO, MS COCO, and LVIS show our approach enhances object-level task interpretability over SOTA for Grounding DINO and Florence-2 across various evaluation metrics, with faithfulness gains of 23.7\%, 31.6\%, and 20.1\% on MS COCO, LVIS, and RefCOCO for Grounding DINO, and 102.9\% and 66.9\% on MS COCO and RefCOCO for Florence-2. Additionally, our method can interpret failures in visual grounding and object detection tasks, surpassing existing methods across multiple evaluation metrics. The code will be released at https://github.com/RuoyuChen10/VPS.

  • 8 authors
·
Nov 25, 2024

Diagnosing and Mitigating Modality Interference in Multimodal Large Language Models

Multimodal Large Language Models have demonstrated impressive capabilities across tasks, yet they often exhibit difficulty in distinguishing task-relevant from irrelevant signals -- particularly in tasks like Visual Question Answering -- which can lead to susceptibility to misleading or spurious inputs. We refer to this broader limitation as the Cross-Modality Competency Problem -- the model's inability to fairly evaluate all modalities. This vulnerability becomes more evident in modality-specific tasks -- such as image classification or pure text question answering -- where models are expected to rely solely on one modality. In such tasks, spurious information from irrelevant modalities often leads to significant performance degradation. We refer to this failure as Modality Interference, which serves as a concrete and measurable instance of the cross-modality competency problem, and we further design a perturbation-based causal diagnostic experiment to verify and quantify this problem. To mitigate modality interference, we propose a novel framework to finetune MLLMs, including perturbation-based data augmentations with both heuristic perturbations and adversarial perturbations, and a consistency regularization strategy applying on model outputs with original and perturbed inputs. Experiments on multiple benchmark datasets (image-heavy, text-heavy and multimodal tasks) and multiple model families with different scales demonstrate significant improvements in robustness and cross-modality competency, indicating our method's effectiveness in boosting unimodal reasoning ability while enhancing performance on multimodal tasks.

ucdavis UC Davis
·
May 26, 2025

Seeing Isn't Always Believing: Analysis of Grad-CAM Faithfulness and Localization Reliability in Lung Cancer CT Classification

Explainable Artificial Intelligence (XAI) techniques, such as Gradient-weighted Class Activation Mapping (Grad-CAM), have become indispensable for visualizing the reasoning process of deep neural networks in medical image analysis. Despite their popularity, the faithfulness and reliability of these heatmap-based explanations remain under scrutiny. This study critically investigates whether Grad-CAM truly represents the internal decision-making of deep models trained for lung cancer image classification. Using the publicly available IQ-OTH/NCCD dataset, we evaluate five representative architectures: ResNet-50, ResNet-101, DenseNet-161, EfficientNet-B0, and ViT-Base-Patch16-224, to explore model-dependent variations in Grad-CAM interpretability. We introduce a quantitative evaluation framework that combines localization accuracy, perturbation-based faithfulness, and explanation consistency to assess Grad-CAM reliability across architectures. Experimental findings reveal that while Grad-CAM effectively highlights salient tumor regions in most convolutional networks, its interpretive fidelity significantly degrades for Vision Transformer models due to non-local attention behavior. Furthermore, cross-model comparisons indicate substantial variability in saliency localization, implying that Grad-CAM explanations may not always correspond to the true diagnostic evidence used by the networks. This work exposes critical limitations of current saliency-based XAI approaches in medical imaging and emphasizes the need for model-aware interpretability methods that are both computationally sound and clinically meaningful. Our findings aim to inspire a more cautious and rigorous adoption of visual explanation tools in medical AI, urging the community to rethink what it truly means to "trust" a model's explanation.

  • 1 authors
·
Jan 19

What Matters for Diffusion-Friendly Latent Manifold? Prior-Aligned Autoencoders for Latent Diffusion

Tokenizers are a crucial component of latent diffusion models, as they define the latent space in which diffusion models operate. However, existing tokenizers are primarily designed to improve reconstruction fidelity or inherit pretrained representations, leaving unclear what kind of latent space is truly friendly for generative modeling. In this paper, we study this question from the perspective of latent manifold organization. By constructing controlled tokenizer variants, we identify three key properties of a diffusion-friendly latent manifold: coherent spatial structure, local manifold continuity, and global manifold semantics. We find that these properties are more consistent with downstream generation quality than reconstruction fidelity. Motivated by this finding, we propose the Prior-Aligned AutoEncoder (PAE), which explicitly shapes the latent manifold instead of leaving diffusion-friendly manifold to emerge indirectly from reconstruction or inheritance. Specifically, PAE leverages refined priors derived from VFMs and perturbation-based regularization to turn spatial structure, local continuity, and global semantics into explicit training objectives. On ImageNet 256x256, PAE improves both training efficiency and generation quality over existing tokenizers, reaching performance comparable to RAE with up to 13x faster convergence under the same training setup and achieving a new state-of-the-art gFID of 1.03. These results highlight the importance of organizing the latent manifold for latent diffusion models.

AGI-LAB-HF AGI Lab
·
May 7 2

How explainable are adversarially-robust CNNs?

Three important criteria of existing convolutional neural networks (CNNs) are (1) test-set accuracy; (2) out-of-distribution accuracy; and (3) explainability. While these criteria have been studied independently, their relationship is unknown. For example, do CNNs that have a stronger out-of-distribution performance have also stronger explainability? Furthermore, most prior feature-importance studies only evaluate methods on 2-3 common vanilla ImageNet-trained CNNs, leaving it unknown how these methods generalize to CNNs of other architectures and training algorithms. Here, we perform the first, large-scale evaluation of the relations of the three criteria using 9 feature-importance methods and 12 ImageNet-trained CNNs that are of 3 training algorithms and 5 CNN architectures. We find several important insights and recommendations for ML practitioners. First, adversarially robust CNNs have a higher explainability score on gradient-based attribution methods (but not CAM-based or perturbation-based methods). Second, AdvProp models, despite being highly accurate more than both vanilla and robust models alone, are not superior in explainability. Third, among 9 feature attribution methods tested, GradCAM and RISE are consistently the best methods. Fourth, Insertion and Deletion are biased towards vanilla and robust models respectively, due to their strong correlation with the confidence score distributions of a CNN. Fifth, we did not find a single CNN to be the best in all three criteria, which interestingly suggests that CNNs are harder to interpret as they become more accurate.

  • 4 authors
·
May 25, 2022

Towards Improved Input Masking for Convolutional Neural Networks

The ability to remove features from the input of machine learning models is very important to understand and interpret model predictions. However, this is non-trivial for vision models since masking out parts of the input image typically causes large distribution shifts. This is because the baseline color used for masking (typically grey or black) is out of distribution. Furthermore, the shape of the mask itself can contain unwanted signals which can be used by the model for its predictions. Recently, there has been some progress in mitigating this issue (called missingness bias) in image masking for vision transformers. In this work, we propose a new masking method for CNNs we call layer masking in which the missingness bias caused by masking is reduced to a large extent. Intuitively, layer masking applies a mask to intermediate activation maps so that the model only processes the unmasked input. We show that our method (i) is able to eliminate or minimize the influence of the mask shape or color on the output of the model, and (ii) is much better than replacing the masked region by black or grey for input perturbation based interpretability techniques like LIME. Thus, layer masking is much less affected by missingness bias than other masking strategies. We also demonstrate how the shape of the mask may leak information about the class, thus affecting estimates of model reliance on class-relevant features derived from input masking. Furthermore, we discuss the role of data augmentation techniques for tackling this problem, and argue that they are not sufficient for preventing model reliance on mask shape. The code for this project is publicly available at https://github.com/SriramB-98/layer_masking

  • 2 authors
·
Nov 26, 2022

T-TAME: Trainable Attention Mechanism for Explaining Convolutional Networks and Vision Transformers

The development and adoption of Vision Transformers and other deep-learning architectures for image classification tasks has been rapid. However, the "black box" nature of neural networks is a barrier to adoption in applications where explainability is essential. While some techniques for generating explanations have been proposed, primarily for Convolutional Neural Networks, adapting such techniques to the new paradigm of Vision Transformers is non-trivial. This paper presents T-TAME, Transformer-compatible Trainable Attention Mechanism for Explanations, a general methodology for explaining deep neural networks used in image classification tasks. The proposed architecture and training technique can be easily applied to any convolutional or Vision Transformer-like neural network, using a streamlined training approach. After training, explanation maps can be computed in a single forward pass; these explanation maps are comparable to or outperform the outputs of computationally expensive perturbation-based explainability techniques, achieving SOTA performance. We apply T-TAME to three popular deep learning classifier architectures, VGG-16, ResNet-50, and ViT-B-16, trained on the ImageNet dataset, and we demonstrate improvements over existing state-of-the-art explainability methods. A detailed analysis of the results and an ablation study provide insights into how the T-TAME design choices affect the quality of the generated explanation maps.

  • 3 authors
·
Mar 7, 2024

Compressed and Smooth Latent Space for Text Diffusion Modeling

Autoregressive language models dominate modern text generation, yet their sequential nature introduces fundamental limitations: decoding is slow, and maintaining global coherence remains challenging. Diffusion models offer a promising alternative by enabling parallel generation and flexible control; however, their application to text generation is hindered by the high dimensionality of token-level representations. We introduce Cosmos, a novel approach to text generation that operates entirely in a compressed, smooth latent space tailored specifically for diffusion. This space is learned using an autoencoder trained simultaneously for token-level reconstruction and alignment with frozen activations from a pretrained language encoder, providing robust semantic grounding and enabling effective perturbation-based augmentations. Empirically, we demonstrate that text representations can be compressed by 8times while maintaining generation quality comparable to token-level diffusion models. Furthermore, increasing the latent sequence length allows Cosmos to surpass both diffusion-based and autoregressive baselines. We evaluate Cosmos on four diverse generative tasks including story generation, question generation, summarization, and detoxification and compare it with various generative paradigms. Cosmos achieves comparable or superior generation quality while offering more than 2times faster inference.

  • 5 authors
·
Jun 26, 2025

UMoE:Unlocking Every Expert in Domain-Specific Training

Mixture-of-Experts (MoE) models scale capacity without proportional compute cost and have become a key architecture for frontier large language models (LLMs). Yet domain-specific post-training inherits an expert pool shaped by mixed-domain pre-training: a substantial subset of experts contributes little on the target domain, and standard supervised fine-tuning (SFT) leaves the composition of this pool unchanged. We propose a simple, budget-preserving pipeline that realigns the expert pool to the target domain before fine-tuning. Given a target domain, we (1) prune the experts with lowest domain-aligned saliency, (2) regrow the expert pool to its original size through perturbation-based expert expansion, and (3) apply standard SFT. The resulting model preserves the original expert count, parameter count, and inference cost. With a single frozen recipe and no per-domain hyperparameter tuning, UMoE consistently improves over direct sft across two MoE architectures (Qwen3-30B-A3B and Qwen3.5-35B-A3B), five domains (math, code, science, tool-use, and agentic coding), and 12 benchmarks. Representative improvements are 3.4 points in math average accuracy, 6.0 points on SWE-bench Verified. On a strong in-house math corpus, direct sft already surpasses Qwen3-30B-A3B-Thinking (82.81 vs.\ 81.06), yet UMoE further raises the average to 84.17, an additional 1.36 points, demonstrating robustness to a substantially stronger SFT regime. Data-scaling experiments further show that the gain persists as training data grows. Analysis reveals that the direct-SFT model allocates substantial routed-expert compute to a low-saliency subset that can be removed post hoc with little average degradation; UMoE turns this redundant capacity into useful domain capacity and achieves lower training loss, with gains spanning all difficulty levels in downstream evaluation.

  • 2 authors
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Jul 12

SAUL: Sharpness-Aware Augmented-Lagrangian Unlearning

Machine unlearning in Large Language Models (LLMs) faces a critical trade-off between erasing target knowledge and preserving general utility. We propose SAUL (Sharpness-Aware Augmented-Lagrangian Unlearning), which formulates unlearning as a constrained minimization problem following the principle of "forget enough, but no more than necessary." At its core, SAUL formulates forgetting as an explicit constraint with a prescribed satisfaction criterion, whereas prior unlearning methods typically specify the desired level of forgetting implicitly through optimization objectives. An augmented Lagrangian controller adaptively adjusts forget-side pressure according to constraint violation and can eventually deactivate the forget-side update as the prescribed criterion remains satisfied. Sharpness-aware updates on both retain and forget objectives, together with a dual-optimizer design that maintains role-separated states, further stabilize the resulting unlearning dynamics. We evaluate SAUL on the TOFU, WMDP, and MUSE benchmarks, demonstrating favorable forgetting-utility trade-offs over representative sharpness- and perturbation-based baselines under benchmark-specific forgetting criteria. Beyond the complete SAUL framework, we further show on TOFU that applying the augmented-Lagrangian controller as a drop-in modifier to representative baselines improves their post-forgetting utility, demonstrating the practical value of explicit forgetting control.

  • 3 authors
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Aug 16

MEA: A Reward-Driven Multi-Agent System for Faithful Model Explanations

Recent years have seen the employment of a plethora of machine learning (ML) models in high-stakes domains, but they remain largely opaque to the practitioners who act on their predictions. While post-hoc explanation methods offer a lens into this model behavior, wielding them effectively demands expertise most domain experts lack: navigating high-dimensional outputs, selecting the best explanations, and synthesizing evidence across disparate tools. To this end, we present MEA, a multi-agent framework that removes the explanation knowledge barrier entirely: a Proposer agent selects and configures explanation tools based on the question and modality, while an Actor agent is optimized end-to-end against faithfulness, transforming the outputs into natural language explanations grounded in model behavior across tabular, text, and vision modalities. Further, we introduce diverse question types spanning feature attribution, counterfactual reasoning, and spurious feature detection, each paired with a perturbation-based faithfulness metric. We find that frontier LLMs systematically produce unfaithful explanations. By optimizing against faithfulness rewards augmented with a modality-adaptive penalty, MEA consistently outperforms post hoc explainers, agentic, and closed-source baselines across six datasets, with reward-driven optimization yielding faithfulness gains of +28% (tabular), +21% (text), and +34% (vision) over the untrained backbone. More broadly, our findings suggest that AI agents themselves can serve as a scalable, adaptable interface to ML explainability, opening a path toward natural-language explainability that generalizes beyond the fixed, single-purpose tools that have long defined the field.

Perturbation Ontology based Graph Attention Networks

In recent years, graph representation learning has undergone a paradigm shift, driven by the emergence and proliferation of graph neural networks (GNNs) and their heterogeneous counterparts. Heterogeneous GNNs have shown remarkable success in extracting low-dimensional embeddings from complex graphs that encompass diverse entity types and relationships. While meta-path-based techniques have long been recognized for their ability to capture semantic affinities among nodes, their dependence on manual specification poses a significant limitation. In contrast, matrix-focused methods accelerate processing by utilizing structural cues but often overlook contextual richness. In this paper, we challenge the current paradigm by introducing ontology as a fundamental semantic primitive within complex graphs. Our goal is to integrate the strengths of both matrix-centric and meta-path-based approaches into a unified framework. We propose perturbation Ontology-based Graph Attention Networks (POGAT), a novel methodology that combines ontology subgraphs with an advanced self-supervised learning paradigm to achieve a deep contextual understanding. The core innovation of POGAT lies in our enhanced homogeneous perturbing scheme designed to generate rigorous negative samples, encouraging the model to explore minimal contextual features more thoroughly. Through extensive empirical evaluations, we demonstrate that POGAT significantly outperforms state-of-the-art baselines, achieving a groundbreaking improvement of up to 10.78\% in F1-score for the critical task of link prediction and 12.01\% in Micro-F1 for the critical task of node classification.

  • 6 authors
·
Nov 27, 2024

A Neural Network Perturbation Theory Based on the Born Series

Deep Learning using the eponymous deep neural networks (DNNs) has become an attractive approach towards various data-based problems of theoretical physics in the past decade. There has been a clear trend to deeper architectures containing increasingly more powerful and involved layers. Contrarily, Taylor coefficients of DNNs still appear mainly in the light of interpretability studies, where they are computed at most to first order. However, especially in theoretical physics numerous problems benefit from accessing higher orders, as well. This gap motivates a general formulation of neural network (NN) Taylor expansions. Restricting our analysis to multilayer perceptrons (MLPs) and introducing quantities we refer to as propagators and vertices, both depending on the MLP's weights and biases, we establish a graph-theoretical approach. Similarly to Feynman rules in quantum field theories, we can systematically assign diagrams containing propagators and vertices to the corresponding partial derivative. Examining this approach for S-wave scattering lengths of shallow potentials, we observe NNs to adapt their derivatives mainly to the leading order of the target function's Taylor expansion. To circumvent this problem, we propose an iterative NN perturbation theory. During each iteration we eliminate the leading order, such that the next-to-leading order can be faithfully learned during the subsequent iteration. After performing two iterations, we find that the first- and second-order Born terms are correctly adapted during the respective iterations. Finally, we combine both results to find a proxy that acts as a machine-learned second-order Born approximation.

  • 2 authors
·
Sep 7, 2020

APHQ-ViT: Post-Training Quantization with Average Perturbation Hessian Based Reconstruction for Vision Transformers

Vision Transformers (ViTs) have become one of the most commonly used backbones for vision tasks. Despite their remarkable performance, they often suffer significant accuracy drops when quantized for practical deployment, particularly by post-training quantization (PTQ) under ultra-low bits. Recently, reconstruction-based PTQ methods have shown promising performance in quantizing Convolutional Neural Networks (CNNs). However, they fail when applied to ViTs, primarily due to the inaccurate estimation of output importance and the substantial accuracy degradation in quantizing post-GELU activations. To address these issues, we propose APHQ-ViT, a novel PTQ approach based on importance estimation with Average Perturbation Hessian (APH). Specifically, we first thoroughly analyze the current approximation approaches with Hessian loss, and propose an improved average perturbation Hessian loss. To deal with the quantization of the post-GELU activations, we design an MLP Reconstruction (MR) method by replacing the GELU function in MLP with ReLU and reconstructing it by the APH loss on a small unlabeled calibration set. Extensive experiments demonstrate that APHQ-ViT using linear quantizers outperforms existing PTQ methods by substantial margins in 3-bit and 4-bit across different vision tasks. The source code is available at https://github.com/GoatWu/APHQ-ViT.

  • 6 authors
·
Apr 3, 2025

Automatic Perturbation Analysis for Scalable Certified Robustness and Beyond

Linear relaxation based perturbation analysis (LiRPA) for neural networks, which computes provable linear bounds of output neurons given a certain amount of input perturbation, has become a core component in robustness verification and certified defense. The majority of LiRPA-based methods focus on simple feed-forward networks and need particular manual derivations and implementations when extended to other architectures. In this paper, we develop an automatic framework to enable perturbation analysis on any neural network structures, by generalizing existing LiRPA algorithms such as CROWN to operate on general computational graphs. The flexibility, differentiability and ease of use of our framework allow us to obtain state-of-the-art results on LiRPA based certified defense on fairly complicated networks like DenseNet, ResNeXt and Transformer that are not supported by prior works. Our framework also enables loss fusion, a technique that significantly reduces the computational complexity of LiRPA for certified defense. For the first time, we demonstrate LiRPA based certified defense on Tiny ImageNet and Downscaled ImageNet where previous approaches cannot scale to due to the relatively large number of classes. Our work also yields an open-source library for the community to apply LiRPA to areas beyond certified defense without much LiRPA expertise, e.g., we create a neural network with a probably flat optimization landscape by applying LiRPA to network parameters. Our opensource library is available at https://github.com/KaidiXu/auto_LiRPA.

  • 9 authors
·
Feb 28, 2020

VQ-Seg: Vector-Quantized Token Perturbation for Semi-Supervised Medical Image Segmentation

Consistency learning with feature perturbation is a widely used strategy in semi-supervised medical image segmentation. However, many existing perturbation methods rely on dropout, and thus require a careful manual tuning of the dropout rate, which is a sensitive hyperparameter and often difficult to optimize and may lead to suboptimal regularization. To overcome this limitation, we propose VQ-Seg, the first approach to employ vector quantization (VQ) to discretize the feature space and introduce a novel and controllable Quantized Perturbation Module (QPM) that replaces dropout. Our QPM perturbs discrete representations by shuffling the spatial locations of codebook indices, enabling effective and controllable regularization. To mitigate potential information loss caused by quantization, we design a dual-branch architecture where the post-quantization feature space is shared by both image reconstruction and segmentation tasks. Moreover, we introduce a Post-VQ Feature Adapter (PFA) to incorporate guidance from a foundation model (FM), supplementing the high-level semantic information lost during quantization. Furthermore, we collect a large-scale Lung Cancer (LC) dataset comprising 828 CT scans annotated for central-type lung carcinoma. Extensive experiments on the LC dataset and other public benchmarks demonstrate the effectiveness of our method, which outperforms state-of-the-art approaches. Code available at: https://github.com/script-Yang/VQ-Seg.

  • 3 authors
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Jan 15 2

CIS(2): a state-specific, size-intensive perturbative correction to configuration interaction singles

We present a state-specific second-order perturbation theory based on a configuration interaction singles (CIS) reference and its generalized Fock operator. Starting from a fully internally contracted construction, we retain the complete doubles space and internally contracted triples in the first-order wave function. We consider two partitions, Canonical and Block-diagonal, with reference excitation energies given by the Fock excitation gap ω^{(0)} and the CIS excitation energy ω_{rm CIS}, respectively. Our analysis establishes that strict size-intensivity is preserved when the contracted-triples denominators use bare Fock gaps and the occupied--virtual Fock block is projected to remove residual spectator coupling. Based on this observation, combining Canonical triples with Block-diagonal doubles yields a size-intensive Hybrid partition. These properties are verified for water with non-interacting helium atoms. Our formulation enables O(o^3v^2) cost per matrix--vector product in a semicanonical basis. On the QUEST\#1 benchmark, Canonical and Block-diagonal show opposite systematic biases, whereas Hybrid gives the best overall accuracy among the three partitions. Its mean absolute errors for singlets and triplets are 0.24 and 0.15~eV, compared with 0.28 and 0.22~eV for CIS(D). The improvement is largest for Rydberg excitations, although CIS(D) remains more accurate for valence singlets.

  • 1 authors
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Oct 1

Adversarial Attacks on Multimodal Agents

Vision-enabled language models (VLMs) are now used to build autonomous multimodal agents capable of taking actions in real environments. In this paper, we show that multimodal agents raise new safety risks, even though attacking agents is more challenging than prior attacks due to limited access to and knowledge about the environment. Our attacks use adversarial text strings to guide gradient-based perturbation over one trigger image in the environment: (1) our captioner attack attacks white-box captioners if they are used to process images into captions as additional inputs to the VLM; (2) our CLIP attack attacks a set of CLIP models jointly, which can transfer to proprietary VLMs. To evaluate the attacks, we curated VisualWebArena-Adv, a set of adversarial tasks based on VisualWebArena, an environment for web-based multimodal agent tasks. Within an L-infinity norm of 16/256 on a single image, the captioner attack can make a captioner-augmented GPT-4V agent execute the adversarial goals with a 75% success rate. When we remove the captioner or use GPT-4V to generate its own captions, the CLIP attack can achieve success rates of 21% and 43%, respectively. Experiments on agents based on other VLMs, such as Gemini-1.5, Claude-3, and GPT-4o, show interesting differences in their robustness. Further analysis reveals several key factors contributing to the attack's success, and we also discuss the implications for defenses as well. Project page: https://chenwu.io/attack-agent Code and data: https://github.com/ChenWu98/agent-attack

  • 5 authors
·
Jun 18, 2024 1

Inv-Entropy: A Fully Probabilistic Framework for Uncertainty Quantification in Language Models

Large language models (LLMs) have transformed natural language processing, but their reliable deployment requires effective uncertainty quantification (UQ). Existing UQ methods are often heuristic and lack a probabilistic foundation. This paper begins by providing a theoretical justification for the role of perturbations in UQ for LLMs. We then introduce a dual random walk perspective, modeling input-output pairs as two Markov chains with transition probabilities defined by semantic similarity. Building on this, we propose a fully probabilistic framework based on an inverse model, which quantifies uncertainty by evaluating the diversity of the input space conditioned on a given output through systematic perturbations. Within this framework, we define a new uncertainty measure, Inv-Entropy. A key strength of our framework is its flexibility: it supports various definitions of uncertainty measures, embeddings, perturbation strategies, and similarity metrics. We also propose GAAP, a perturbation algorithm based on genetic algorithms, which enhances the diversity of sampled inputs. In addition, we introduce a new evaluation metric, Temperature Sensitivity of Uncertainty (TSU), which directly assesses uncertainty without relying on correctness as a proxy. Extensive experiments demonstrate that Inv-Entropy outperforms existing semantic UQ methods. The code to reproduce the results can be found at https://github.com/UMDataScienceLab/Uncertainty-Quantification-for-LLMs.

  • 5 authors
·
Jun 11, 2025

CoLVR: Enhancing Exploratory Latent Visual Reasoning via Contrastive Optimization

Due to the potential for exploratory reasoning of Latent Visual Reasoning, recent works tend to enable MLLMs (Multimodal Large Language Models) to perform visual reasoning by propagating continuous hidden states instead of decoding intermediate steps into discrete tokens. However, existing works typically rely on hard alignment objectives to force latent representations to match predefined visual features, thereby severely limiting the exploratory of latent reasoning process. To address this problem, we propose CoLVR (Contrastive Optimization for Latent Visual Reasoning). To obtain a more exploratory visual reasoning, CoLVR introduces a latent contrastive training framework. Firstly, CoLVR learns diverse and exploratory representations with a latent contrastive objective guided by angle-based perturbation, which expands the semantic latent space and avoids over-constrained embedding. Then, CoLVR employs a latent trajectory contrastive reward for RL (Reinforcement Learning) post-training to enable fine-grained optimization of latent visual reasoning process and thus fostering diverse reasoning behaviors. Experiments demonstrate that CoLVR significantly enhances the exploratory capability of latent representations, achieving average improvements of 5.83% on VSP and 8.00% on Jigsaw, while also outperforming existing latent models on out of domain benchmarks, with a 3.40% gain on MMStar. The data, codes, and models are released at https://github.com/Oscar-dzy/CoLVR.

  • 6 authors
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May 11

Random Sub-Samples Generation for Self-Supervised Real Image Denoising

With sufficient paired training samples, the supervised deep learning methods have attracted much attention in image denoising because of their superior performance. However, it is still very challenging to widely utilize the supervised methods in real cases due to the lack of paired noisy-clean images. Meanwhile, most self-supervised denoising methods are ineffective as well when applied to the real-world denoising tasks because of their strict assumptions in applications. For example, as a typical method for self-supervised denoising, the original blind spot network (BSN) assumes that the noise is pixel-wise independent, which is much different from the real cases. To solve this problem, we propose a novel self-supervised real image denoising framework named Sampling Difference As Perturbation (SDAP) based on Random Sub-samples Generation (RSG) with a cyclic sample difference loss. Specifically, we dig deeper into the properties of BSN to make it more suitable for real noise. Surprisingly, we find that adding an appropriate perturbation to the training images can effectively improve the performance of BSN. Further, we propose that the sampling difference can be considered as perturbation to achieve better results. Finally we propose a new BSN framework in combination with our RSG strategy. The results show that it significantly outperforms other state-of-the-art self-supervised denoising methods on real-world datasets. The code is available at https://github.com/p1y2z3/SDAP.

  • 5 authors
·
Jul 31, 2023

Deep learning-based virtual perturbation reveals increasing heterogeneity of gene regulatory responses with aging

A central hypothesis in aging biology proposes that the gradual accumulation of stochastic molecular damage drives transcriptional deregulation (TD), ultimately leading to functional decline. However, existing single-cell analyses largely rely on static expression measurements and provide limited resolution of how regulatory responses change at the level of individual cells. Here, we leverage DKO, a deep learning framework that predicts cell-specific virtual gene perturbation effects from unperturbed transcriptomes, capturing cell-to-cell differences in regulatory context without requiring a reconstructed gene regulatory network or matched perturbation data. Applying DKO to single-cell transcriptomic datasets from humans, mice, Drosophila, and C. elegans revealed that the transcriptional consequences of perturbing the same gene became increasingly heterogeneous across cells with age, indicating that gene regulatory responses become less consistent and more dependent on cellular context. Furthermore, we find that cells with higher somatic mutation burdens have greater knockout-response variability, linking accumulated molecular damage to regulatory inconsistency. Within the same cellular populations, higher impact variability was also associated with higher senescence scores, linking transcriptional dysregulation to senescence-associated states. Our findings identify a progressive loss of regulatory robustness at both the gene and cell levels as a conserved feature of aging, linking stochastic molecular damage to increasing heterogeneity in cellular regulatory responses.

  • 4 authors
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Oct 13

Learning Perturbation-Specific Representations through Conditional Energy Prior for Cellular Response Prediction

AI-based cellular perturbation prediction is essential to accelerate drug discovery and therapeutic identification. However, perturbation-specific signals are generally obscured by cellular complexity, making it difficult for existing methods to correctly capture perturbation effects. To address this problem, we propose PerturbEnergy, which introduces a conditional energy-based prior over perturbation representations. It assigns lower energy (higher probability) to representations compatible with the given perturbation and higher energy to others, thereby explicitly tilting the latent space toward perturbation-preferred regions. Besides, PerturbEnergy can be integrated into autoencoder architectures as we find its Evidence Lower Bound (ELBO) is equivalent to the ELBO of the complete autoencoder. We further prove that optimizing PerturbEnergy increases the lower bound on the conditional mutual information between representation and perturbation. Extensive experiments on four benchmark datasets demonstrate the effectiveness of our PerturbEnergy: it improves perturbation recognition especially in latent space with improvement of up to 83.2\%; It also achieves state-of-the-art performance for predicting top-50/100/200 differentially expressed gene(DEG) response and remaining competitive on highly variable gene(HVG) prediction. The code is provided: https://github.com/BlueWhaleLab/PerturbEnergy

  • 2 authors
·
Oct 12

PerturbBridge: Direct Phenotypic Supervision for Cellular Perturbation Generation

Virtual cell models should capture phenotypes induced by specific perturbations. However, image-based models are typically trained and evaluated to match real-image distributions, which alone does not explicitly prioritize perturbation-specific biological responses. Recent approaches add biological signals through reinforcement-learning post-training or inference-time steering, raising a central question: where should biological response information enter the generative pipeline? We introduce PerturbBridge, a stochastic data-to-data bridge model that directly supervises perturbation-specific phenotypes in predicted perturbed images during training. PerturbBridge jointly optimizes bridge regression and differentiable biological response losses, with biological gradients passing through a frozen image encoder. We further introduce perturbation-response evaluations based on downstream classification and retrieval. Across three microscopy benchmarks for perturbation profiling and subcellular imaging, PerturbBridge surpasses CellFlux in biological fidelity, image quality, and sampling efficiency. On BBBC021, mechanism-of-action classification improves by 5.66 and 7.5 percentage points with morphological and learned visual features, respectively. On JUMP and AllenCell, retrieval Hit@10 and Hit@1 improve by 1.77 and 7.15 percentage points, respectively. On BBBC021 and JUMP, PerturbBridge achieves lower FID with 80% fewer model evaluations than CellFlux. Overall, these results show that directly supervising perturbation responses during training improves phenotypic fidelity while enabling efficient cellular image generation. Code is available at https://github.com/yyc1215lll-creator/PerturbBridge.

  • 6 authors
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Oct 11

Making Reconstruction-based Method Great Again for Video Anomaly Detection

Anomaly detection in videos is a significant yet challenging problem. Previous approaches based on deep neural networks employ either reconstruction-based or prediction-based approaches. Nevertheless, existing reconstruction-based methods 1) rely on old-fashioned convolutional autoencoders and are poor at modeling temporal dependency; 2) are prone to overfit the training samples, leading to indistinguishable reconstruction errors of normal and abnormal frames during the inference phase. To address such issues, firstly, we get inspiration from transformer and propose {textbf S}patio-{textbf T}emporal {textbf A}uto-{textbf T}rans-{textbf E}ncoder, dubbed as STATE, as a new autoencoder model for enhanced consecutive frame reconstruction. Our STATE is equipped with a specifically designed learnable convolutional attention module for efficient temporal learning and reasoning. Secondly, we put forward a novel reconstruction-based input perturbation technique during testing to further differentiate anomalous frames. With the same perturbation magnitude, the testing reconstruction error of the normal frames lowers more than that of the abnormal frames, which contributes to mitigating the overfitting problem of reconstruction. Owing to the high relevance of the frame abnormality and the objects in the frame, we conduct object-level reconstruction using both the raw frame and the corresponding optical flow patches. Finally, the anomaly score is designed based on the combination of the raw and motion reconstruction errors using perturbed inputs. Extensive experiments on benchmark video anomaly detection datasets demonstrate that our approach outperforms previous reconstruction-based methods by a notable margin, and achieves state-of-the-art anomaly detection performance consistently. The code is available at https://github.com/wyzjack/MRMGA4VAD.

  • 6 authors
·
Jan 27, 2023

ReLoop: Structured Modeling and Behavioral Verification for Reliable LLM-Based Optimization

Large language models (LLMs) can translate natural language into optimization code, but silent failures pose a critical risk: code that executes and returns solver-feasible solutions may encode semantically incorrect formulations, creating a feasibility-correctness gap of up to 90 percentage points on compositional problems. We introduce ReLoop, addressing silent failures from two complementary directions. Structured generation decomposes code production into a four-stage reasoning chain (understand, formalize, synthesize, verify) that mirrors expert modeling practice, with explicit variable-type reasoning and self-verification to prevent formulation errors at their source. Behavioral verification detects errors that survive generation by testing whether the formulation responds correctly to solver-based parameter perturbation, without requiring ground truth -- an external semantic signal that bypasses the self-consistency problem inherent in LLM-based code review. The two mechanisms are complementary: structured generation dominates on complex compositional problems, while behavioral verification becomes the largest single contributor on problems with localized formulation defects. Together with execution recovery via IIS-enhanced diagnostics, ReLoop raises correctness from 22.6% to 31.1% and execution from 72.1% to 100.0% on the strongest model, with consistent gains across five models spanning three paradigms (foundation, SFT, RL) and three benchmarks. We additionally release RetailOpt-190, 190 compositional retail optimization scenarios targeting the multi-constraint interactions where LLMs most frequently fail.

  • 5 authors
·
Feb 17

Revisiting Neuron Coverage Metrics and Quality of Deep Neural Networks

Deep neural networks (DNN) have been widely applied in modern life, including critical domains like autonomous driving, making it essential to ensure the reliability and robustness of DNN-powered systems. As an analogy to code coverage metrics for testing conventional software, researchers have proposed neuron coverage metrics and coverage-driven methods to generate DNN test cases. However, Yan et al. doubt the usefulness of existing coverage criteria in DNN testing. They show that a coverage-driven method is less effective than a gradient-based method in terms of both uncovering defects and improving model robustness. In this paper, we conduct a replication study of the work by Yan et al. and extend the experiments for deeper analysis. A larger model and a dataset of higher resolution images are included to examine the generalizability of the results. We also extend the experiments with more test case generation techniques and adjust the process of improving model robustness to be closer to the practical life cycle of DNN development. Our experiment results confirm the conclusion from Yan et al. that coverage-driven methods are less effective than gradient-based methods. Yan et al. find that using gradient-based methods to retrain cannot repair defects uncovered by coverage-driven methods. They attribute this to the fact that the two types of methods use different perturbation strategies: gradient-based methods perform differentiable transformations while coverage-driven methods can perform additional non-differentiable transformations. We test several hypotheses and further show that even coverage-driven methods are constrained only to perform differentiable transformations, the uncovered defects still cannot be repaired by adversarial training with gradient-based methods. Thus, defensive strategies for coverage-driven methods should be further studied.

  • 4 authors
·
Dec 31, 2021

Frequency-Guided Diffusion Model with Perturbation Training for Skeleton-Based Video Anomaly Detection

Video anomaly detection (VAD) is a vital yet complex open-set task in computer vision, commonly tackled through reconstruction-based methods. However, these methods struggle with two key limitations: (1) insufficient robustness in open-set scenarios, where unseen normal motions are frequently misclassified as anomalies, and (2) an overemphasis on, but restricted capacity for, local motion reconstruction, which are inherently difficult to capture accurately due to their diversity. To overcome these challenges, we introduce a novel frequency-guided diffusion model with perturbation training. First, we enhance robustness by training a generator to produce perturbed samples, which are similar to normal samples and target the weakness of the reconstruction model. This training paradigm expands the reconstruction domain of the model, improving its generalization to unseen normal motions. Second, to address the overemphasis on motion details, we employ the 2D Discrete Cosine Transform (DCT) to separate high-frequency (local) and low-frequency (global) motion components. By guiding the diffusion model with observed high-frequency information, we prioritize the reconstruction of low-frequency components, enabling more accurate and robust anomaly detection. Extensive experiments on five widely used VAD datasets demonstrate that our approach surpasses state-of-the-art methods, underscoring its effectiveness in open-set scenarios and diverse motion contexts. Our project website is https://xiaofeng-tan.github.io/projects/FG-Diff/index.html.

  • 4 authors
·
Dec 4, 2024

Towards Robust Defense against Customization via Protective Perturbation Resistant to Diffusion-based Purification

Diffusion models like Stable Diffusion have become prominent in visual synthesis tasks due to their powerful customization capabilities, which also introduce significant security risks, including deepfakes and copyright infringement. In response, a class of methods known as protective perturbation emerged, which mitigates image misuse by injecting imperceptible adversarial noise. However, purification can remove protective perturbations, thereby exposing images again to the risk of malicious forgery. In this work, we formalize the anti-purification task, highlighting challenges that hinder existing approaches, and propose a simple diagnostic protective perturbation named AntiPure. AntiPure exposes vulnerabilities of purification within the "purification-customization" workflow, owing to two guidance mechanisms: 1) Patch-wise Frequency Guidance, which reduces the model's influence over high-frequency components in the purified image, and 2) Erroneous Timestep Guidance, which disrupts the model's denoising strategy across different timesteps. With additional guidance, AntiPure embeds imperceptible perturbations that persist under representative purification settings, achieving effective post-customization distortion. Experiments show that, as a stress test for purification, AntiPure achieves minimal perceptual discrepancy and maximal distortion, outperforming other protective perturbation methods within the purification-customization workflow.

  • 4 authors
·
Sep 18, 2025

Uncertainty-guided Perturbation for Image Super-Resolution Diffusion Model

Diffusion-based image super-resolution methods have demonstrated significant advantages over GAN-based approaches, particularly in terms of perceptual quality. Building upon a lengthy Markov chain, diffusion-based methods possess remarkable modeling capacity, enabling them to achieve outstanding performance in real-world scenarios. Unlike previous methods that focus on modifying the noise schedule or sampling process to enhance performance, our approach emphasizes the improved utilization of LR information. We find that different regions of the LR image can be viewed as corresponding to different timesteps in a diffusion process, where flat areas are closer to the target HR distribution but edge and texture regions are farther away. In these flat areas, applying a slight noise is more advantageous for the reconstruction. We associate this characteristic with uncertainty and propose to apply uncertainty estimate to guide region-specific noise level control, a technique we refer to as Uncertainty-guided Noise Weighting. Pixels with lower uncertainty (i.e., flat regions) receive reduced noise to preserve more LR information, therefore improving performance. Furthermore, we modify the network architecture of previous methods to develop our Uncertainty-guided Perturbation Super-Resolution (UPSR) model. Extensive experimental results demonstrate that, despite reduced model size and training overhead, the proposed UWSR method outperforms current state-of-the-art methods across various datasets, both quantitatively and qualitatively.

  • 4 authors
·
Mar 24, 2025

3DHacker: Spectrum-based Decision Boundary Generation for Hard-label 3D Point Cloud Attack

With the maturity of depth sensors, the vulnerability of 3D point cloud models has received increasing attention in various applications such as autonomous driving and robot navigation. Previous 3D adversarial attackers either follow the white-box setting to iteratively update the coordinate perturbations based on gradients, or utilize the output model logits to estimate noisy gradients in the black-box setting. However, these attack methods are hard to be deployed in real-world scenarios since realistic 3D applications will not share any model details to users. Therefore, we explore a more challenging yet practical 3D attack setting, i.e., attacking point clouds with black-box hard labels, in which the attacker can only have access to the prediction label of the input. To tackle this setting, we propose a novel 3D attack method, termed 3D Hard-label attacker (3DHacker), based on the developed decision boundary algorithm to generate adversarial samples solely with the knowledge of class labels. Specifically, to construct the class-aware model decision boundary, 3DHacker first randomly fuses two point clouds of different classes in the spectral domain to craft their intermediate sample with high imperceptibility, then projects it onto the decision boundary via binary search. To restrict the final perturbation size, 3DHacker further introduces an iterative optimization strategy to move the intermediate sample along the decision boundary for generating adversarial point clouds with smallest trivial perturbations. Extensive evaluations show that, even in the challenging hard-label setting, 3DHacker still competitively outperforms existing 3D attacks regarding the attack performance as well as adversary quality.

  • 6 authors
·
Aug 14, 2023

Revisit Input Perturbation Problems for LLMs: A Unified Robustness Evaluation Framework for Noisy Slot Filling Task

With the increasing capabilities of large language models (LLMs), these high-performance models have achieved state-of-the-art results on a wide range of natural language processing (NLP) tasks. However, the models' performance on commonly-used benchmark datasets often fails to accurately reflect their reliability and robustness when applied to real-world noisy data. To address these challenges, we propose a unified robustness evaluation framework based on the slot-filling task to systematically evaluate the dialogue understanding capability of LLMs in diverse input perturbation scenarios. Specifically, we construct a input perturbation evaluation dataset, Noise-LLM, which contains five types of single perturbation and four types of mixed perturbation data. Furthermore, we utilize a multi-level data augmentation method (character, word, and sentence levels) to construct a candidate data pool, and carefully design two ways of automatic task demonstration construction strategies (instance-level and entity-level) with various prompt templates. Our aim is to assess how well various robustness methods of LLMs perform in real-world noisy scenarios. The experiments have demonstrated that the current open-source LLMs generally achieve limited perturbation robustness performance. Based on these experimental observations, we make some forward-looking suggestions to fuel the research in this direction.

  • 11 authors
·
Oct 10, 2023

BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments

Agents based on large language models have shown great potential in accelerating scientific discovery by leveraging their rich background knowledge and reasoning capabilities. In this paper, we introduce BioDiscoveryAgent, an agent that designs new experiments, reasons about their outcomes, and efficiently navigates the hypothesis space to reach desired solutions. We demonstrate our agent on the problem of designing genetic perturbation experiments, where the aim is to find a small subset out of many possible genes that, when perturbed, result in a specific phenotype (e.g., cell growth). Utilizing its biological knowledge, BioDiscoveryAgent can uniquely design new experiments without the need to train a machine learning model or explicitly design an acquisition function as in Bayesian optimization. Moreover, BioDiscoveryAgent, using Claude 3.5 Sonnet, achieves an average of 21% improvement in predicting relevant genetic perturbations across six datasets, and a 46% improvement in the harder task of non-essential gene perturbation, compared to existing Bayesian optimization baselines specifically trained for this task. Our evaluation includes one dataset that is unpublished, ensuring it is not part of the language model's training data. Additionally, BioDiscoveryAgent predicts gene combinations to perturb more than twice as accurately as a random baseline, a task so far not explored in the context of closed-loop experiment design. The agent also has access to tools for searching the biomedical literature, executing code to analyze biological datasets, and prompting another agent to critically evaluate its predictions. Overall, BioDiscoveryAgent is interpretable at every stage, representing an accessible new paradigm in the computational design of biological experiments with the potential to augment scientists' efficacy.

  • 9 authors
·
May 27, 2024

A Local Perturbation Theory for Cross-Domain Interference and Recovery in Multi-Domain RL

Reinforcement learning (RL) post-training improves large language models (LLMs) on individual domains such as mathematical reasoning, code generation, question answering, and creative writing (CW), but training on one domain often degrades performance on others. Existing explanations based on catastrophic forgetting or global gradient conflict are incomplete: substantial interference can occur even when full-model gradients are nearly orthogonal. We show that single-domain RL produces sparse, small-magnitude parameter edits with weak overlap among top-changed neurons, while different domains still share substantial active computation routes on which update directions determine whether they act synergistically or conflict. Guided by this observation, we prove under a local perturbation model of multi-domain RL that later-domain training harms an earlier domain mainly through a second-order damage term, which under the observed sparse route structure concentrates in a low-dimensional shared conflict subspace. Moreover, a short domain refresh contracts the harmful component on this subspace, enabling selective recovery with limited collateral damage. Consistent with the theory, a brief Re-Math refresh after Code rightarrow Math rightarrow QA rightarrow CW recovers Math from 57.66 to 66.04 while largely preserving performance on the other domains, yielding the best average score of 66.39. Beyond refresh, a training-free rollback on a sparse proxy conflict coordinate set for the Math-QA pair partially restores Math, providing direct proxy-level evidence for localized damage. These results provide a localized mechanistic account of interference and recovery in multi-domain RL.

  • 3 authors
·
May 31 1

Beyond Perturbation Magnitude: Direction-Dependent Responses in Multimodal Geometric Representations

Geometric alignment scores based on Gram determinants provide a compact way to model higher-order consistency among modalities, yet how such scores respond to modality degradation is poorly understood. This paper asks whether the response of a multimodal geometric score is determined primarily by the magnitude of the perturbation-induced displacement. Using frozen cohorts from MSR-VTT (N=878) and DiDeMo (N=980), we apply controlled video blur and audio noise and analyze the response in the relational geometry on which the score is defined. Displacement magnitude explains at most 15% of the out-of-sample variance in the absolute response, and magnitude-matched pairs respond systematically differently, so scalar magnitude does not organize the response. The closed-form first-order expansion of the Gramian volume yields the Directional Geometric Response (DGR): the projection of the displacement onto the local volume gradient, which jointly captures the clean operating point, displacement magnitude, and displacement direction. The absolute first-order DGR term explains the observed response with out-of-sample R^2 of 0.838-0.969, matched-magnitude ranking accuracies of 0.864-0.963, and response-sign accuracies of 0.909-0.989, whereas the tested direction-free alternatives remain weak or unstable under the corresponding evaluation protocols. A pre-specified gain-normalization candidate, V/(g_V+eps), fails its predictability and clean-order gates. DGR uses the observed degraded-state displacement and is therefore an explanatory quantity, not a deployment-time predictor: geometric response depends on where the representation operates, how far degradation moves the relational geometry, and in which direction it moves.

  • 5 authors
·
Oct 5

CellCLIP -- Learning Perturbation Effects in Cell Painting via Text-Guided Contrastive Learning

High-content screening (HCS) assays based on high-throughput microscopy techniques such as Cell Painting have enabled the interrogation of cells' morphological responses to perturbations at an unprecedented scale. The collection of such data promises to facilitate a better understanding of the relationships between different perturbations and their effects on cellular state. Towards achieving this goal, recent advances in cross-modal contrastive learning could, in theory, be leveraged to learn a unified latent space that aligns perturbations with their corresponding morphological effects. However, the application of such methods to HCS data is not straightforward due to substantial differences in the semantics of Cell Painting images compared to natural images, and the difficulty of representing different classes of perturbations (e.g., small molecule vs CRISPR gene knockout) in a single latent space. In response to these challenges, here we introduce CellCLIP, a cross-modal contrastive learning framework for HCS data. CellCLIP leverages pre-trained image encoders coupled with a novel channel encoding scheme to better capture relationships between different microscopy channels in image embeddings, along with natural language encoders for representing perturbations. Our framework outperforms current open-source models, demonstrating the best performance in both cross-modal retrieval and biologically meaningful downstream tasks while also achieving significant reductions in computation time.

  • 4 authors
·
May 16, 2025

FireBERT: Hardening BERT-based classifiers against adversarial attack

We present FireBERT, a set of three proof-of-concept NLP classifiers hardened against TextFooler-style word-perturbation by producing diverse alternatives to original samples. In one approach, we co-tune BERT against the training data and synthetic adversarial samples. In a second approach, we generate the synthetic samples at evaluation time through substitution of words and perturbation of embedding vectors. The diversified evaluation results are then combined by voting. A third approach replaces evaluation-time word substitution with perturbation of embedding vectors. We evaluate FireBERT for MNLI and IMDB Movie Review datasets, in the original and on adversarial examples generated by TextFooler. We also test whether TextFooler is less successful in creating new adversarial samples when manipulating FireBERT, compared to working on unhardened classifiers. We show that it is possible to improve the accuracy of BERT-based models in the face of adversarial attacks without significantly reducing the accuracy for regular benchmark samples. We present co-tuning with a synthetic data generator as a highly effective method to protect against 95% of pre-manufactured adversarial samples while maintaining 98% of original benchmark performance. We also demonstrate evaluation-time perturbation as a promising direction for further research, restoring accuracy up to 75% of benchmark performance for pre-made adversarials, and up to 65% (from a baseline of 75% orig. / 12% attack) under active attack by TextFooler.

  • 3 authors
·
Aug 10, 2020

Complexity-Based Prompting for Multi-Step Reasoning

We study the task of prompting large-scale language models to perform multi-step reasoning. Existing work shows that when prompted with a chain of thoughts (CoT), sequences of short sentences describing intermediate reasoning steps towards a final answer, large language models can generate new reasoning chains and predict answers for new inputs. A central question is which reasoning examples make the most effective prompts. In this work, we propose complexity-based prompting, a simple and effective example selection scheme for multi-step reasoning. We show that prompts with higher reasoning complexity, i.e., chains with more reasoning steps, achieve substantially better performance on multi-step reasoning tasks over strong baselines. We further extend our complexity-based criteria from prompting (selecting inputs) to decoding (selecting outputs), where we sample multiple reasoning chains from the model, then choose the majority of generated answers from complex reasoning chains (over simple chains). When used to prompt GPT-3 and Codex, our approach substantially improves multi-step reasoning accuracy and achieves new state-of-the-art (SOTA) performance on three math benchmarks (GSM8K, MultiArith, and MathQA) and two BigBenchHard tasks (Date Understanding and Penguins), with an average +5.3 and up to +18 accuracy improvements. Compared with existing example selection schemes like manual tuning or retrieval-based selection, selection based on reasoning complexity is intuitive, easy to implement, and annotation-efficient. Further results demonstrate the robustness of performance gains from complex prompts under format perturbation and distribution shift.

  • 5 authors
·
Oct 3, 2022

APLA: Additional Perturbation for Latent Noise with Adversarial Training Enables Consistency

Diffusion models have exhibited promising progress in video generation. However, they often struggle to retain consistent details within local regions across frames. One underlying cause is that traditional diffusion models approximate Gaussian noise distribution by utilizing predictive noise, without fully accounting for the impact of inherent information within the input itself. Additionally, these models emphasize the distinction between predictions and references, neglecting information intrinsic to the videos. To address this limitation, inspired by the self-attention mechanism, we propose a novel text-to-video (T2V) generation network structure based on diffusion models, dubbed Additional Perturbation for Latent noise with Adversarial training (APLA). Our approach only necessitates a single video as input and builds upon pre-trained stable diffusion networks. Notably, we introduce an additional compact network, known as the Video Generation Transformer (VGT). This auxiliary component is designed to extract perturbations from the inherent information contained within the input, thereby refining inconsistent pixels during temporal predictions. We leverage a hybrid architecture of transformers and convolutions to compensate for temporal intricacies, enhancing consistency between different frames within the video. Experiments demonstrate a noticeable improvement in the consistency of the generated videos both qualitatively and quantitatively.

  • 5 authors
·
Aug 24, 2023

The Paradox of Robustness: Decoupling Rule-Based Logic from Affective Noise in High-Stakes Decision-Making

While Large Language Models (LLMs) are widely documented to be sensitive to minor prompt perturbations and prone to sycophantic alignment with user biases, their robustness in consequential, rule-bound decision-making remains under-explored. In this work, we uncover a striking "Paradox of Robustness": despite their known lexical brittleness, instruction-tuned LLMs exhibit a behavioral and near-total invariance to emotional framing effects. Using a novel controlled perturbation framework across three high-stakes domains (healthcare, law, and finance), we quantify a robustness gap where LLMs demonstrate 110-300 times greater resistance to narrative manipulation than human subjects. Specifically, we find a near-zero effect size for models (Cohen's h = 0.003) compared to the substantial biases observed in humans (Cohen's h in [0.3, 0.8]). This result is highly counterintuitive and suggests the mechanisms driving sycophancy and prompt sensitivity do not necessarily translate to a failure in logical constraint satisfaction. We show that this invariance persists across models with diverse training paradigms. Our findings show that while LLMs may be "brittle" to how a query is formatted, they are remarkably "stable" against why a decision should be biased. Our findings establish that instruction-tuned models can decouple logical rule-adherence from persuasive narratives, offering a source of decision stability that complements, and even potentially de-biases, human judgment in institutional contexts. We release the 162-scenario benchmark, code, and data to facilitate the rigorous evaluation of narrative-induced bias and robustness on GitHub.com.

  • 2 authors
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Jan 29

Nonsense Helps: Prompt Space Perturbation Broadens Reasoning Exploration

Reinforcement learning with verifiable rewards, particularly Group Relative Policy Optimization (GRPO), has significantly advanced the reasoning capabilities of Large Language Models (LLMs). However, in complex tasks, GRPO frequently suffers from the ``zero-advantage problem'': when all sampled rollouts for a query fail, the relative advantage collapses to zero. Consequently, the model loses effective training signals for these questions, wasting the training data and computational budget. While simply increasing the sampling budget for these questions is a common remedy, the static sampling policy inherently constrains reasoning exploration, limiting the success rate. In this paper, we propose Lorem Perturbation for Exploration (LoPE), a simple yet effective training framework to break this exploration bottleneck. We posit that task-irrelevant prompt-space perturbations can shift the model's output distribution enough to unlock orthogonal reasoning pathways for hard questions. Specifically, LoPE prepends sequences stochastically assembled from Lorem Ipsum vocabulary (a pseudo-Latin placeholder text) to the prompts before resampling. Experiments across 1.7B, 4B, and 7B models demonstrate that LoPE significantly outperforms resampling with the original prompts. Further analysis reveals that other Latin-based random sequences with low perplexity are also effective perturbations. Our results establish LoPE as a strong baseline for broadening exploration in LLM reinforcement learning.

  • 6 authors
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May 6 3

On the Predictive Skill of Artificial Intelligence-based Weather Models for Extreme Events using Uncertainty Quantification

Accurate prediction of extreme weather events remains a major challenge for artificial intelligence-based weather prediction systems. While deterministic models such as FuXi, GraphCast, and SFNO have achieved competitive forecast skill relative to numerical weather prediction, their ability to represent uncertainty and capture extremes is still limited. This study investigates how state-of-the-art deterministic artificial intelligence-based models respond to initial-condition perturbations and evaluates the resulting ensembles in forecasting extremes. Using four perturbation strategies (Gaussian, Perlin noise, Hemispheric Centered Bred Vectors, and Huge Ensembles), we generate 50 member ensembles for the August 2022 Pakistan floods and China heatwave, and complement these case studies with a global threshold-based evaluation. Ensemble skill is assessed against ERA5 and compared with IFS ENS and the AIFS ENS probabilistic model using deterministic and probabilistic metrics. Results show that simpler perturbations like Gaussian and Perlin noise produce similarly realistic ensemble spread and probabilistic skill as flow-based approaches like HCBV and HENS, narrowing but not closing the performance gap with numerical weather prediction ensembles, or native probabilistic models which retain the highest probabilistic skill across variables. Model choice is the dominant factor for ensemble performance, not perturbation method. Across variables, models capture temperature extremes more effectively than precipitation. These findings demonstrate that simple input perturbations can extend deterministic models toward probabilistic forecasting in hardware-constrained settings, supporting artificial intelligence-driven early warning systems.

Fast and Scalable Caputo Fractional Gradient Descent via Perturbation-Preserving Memory Compression

Fractional gradient descent (FGD) incorporates long-range memory through Caputo-type operators and has been shown to improve stability in ill-conditioned and nonconvex optimization problems. Despite these advantages, its practical use remains limited, mainly due to the high computational cost of evaluating history-dependent convolutions, which scales quadratically with the number of iterations. In this paper, we focus on making Caputo-based optimization computationally viable without sacrificing its intrinsic memory structure. We begin by expressing the fractional descent direction as a discrete convolution over past gradients, which provides a unified view of the method. Based on this formulation, we introduce two complementary mechanisms to reduce the cost of the memory term. The first uses a sum-of-exponentials (SOE) approximation of the power-law kernel, leading to efficient recursive updates. The second approach, newly proposed in this paper as dyadic hierarchical discrete convolution (DHDC), compresses the gradient history through a multiscale aggregation strategy. Rather than treating these approximations as purely numerical accelerations, we interpret them as perturbations of the ideal Caputo operator. This viewpoint allows us to analyze how the compressed memory affects the optimization dynamics. Under standard μ-strong convexity and L-smoothness assumptions, we show that the resulting method still exhibits monotone descent and linear convergence, provided that the approximation error remains controlled.

  • 3 authors
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Jul 15

A Novel Bifurcation Method for Observation Perturbation Attacks on Reinforcement Learning Agents: Load Altering Attacks on a Cyber Physical Power System

Components of cyber physical systems, which affect real-world processes, are often exposed to the internet. Replacing conventional control methods with Deep Reinforcement Learning (DRL) in energy systems is an active area of research, as these systems become increasingly complex with the advent of renewable energy sources and the desire to improve their efficiency. Artificial Neural Networks (ANN) are vulnerable to specific perturbations of their inputs or features, called adversarial examples. These perturbations are difficult to detect when properly regularized, but have significant effects on the ANN's output. Because DRL uses ANN to map optimal actions to observations, they are similarly vulnerable to adversarial examples. This work proposes a novel attack technique for continuous control using Group Difference Logits loss with a bifurcation layer. By combining aspects of targeted and untargeted attacks, the attack significantly increases the impact compared to an untargeted attack, with drastically smaller distortions than an optimally targeted attack. We demonstrate the impacts of powerful gradient-based attacks in a realistic smart energy environment, show how the impacts change with different DRL agents and training procedures, and use statistical and time-series analysis to evaluate attacks' stealth. The results show that adversarial attacks can have significant impacts on DRL controllers, and constraining an attack's perturbations makes it difficult to detect. However, certain DRL architectures are far more robust, and robust training methods can further reduce the impact.

  • 3 authors
·
Jul 6, 2024

Fine-Grained Perturbation Guidance via Attention Head Selection

Recent guidance methods in diffusion models steer reverse sampling by perturbing the model to construct an implicit weak model and guide generation away from it. Among these approaches, attention perturbation has demonstrated strong empirical performance in unconditional scenarios where classifier-free guidance is not applicable. However, existing attention perturbation methods lack principled approaches for determining where perturbations should be applied, particularly in Diffusion Transformer (DiT) architectures where quality-relevant computations are distributed across layers. In this paper, we investigate the granularity of attention perturbations, ranging from the layer level down to individual attention heads, and discover that specific heads govern distinct visual concepts such as structure, style, and texture quality. Building on this insight, we propose "HeadHunter", a systematic framework for iteratively selecting attention heads that align with user-centric objectives, enabling fine-grained control over generation quality and visual attributes. In addition, we introduce SoftPAG, which linearly interpolates each selected head's attention map toward an identity matrix, providing a continuous knob to tune perturbation strength and suppress artifacts. Our approach not only mitigates the oversmoothing issues of existing layer-level perturbation but also enables targeted manipulation of specific visual styles through compositional head selection. We validate our method on modern large-scale DiT-based text-to-image models including Stable Diffusion 3 and FLUX.1, demonstrating superior performance in both general quality enhancement and style-specific guidance. Our work provides the first head-level analysis of attention perturbation in diffusion models, uncovering interpretable specialization within attention layers and enabling practical design of effective perturbation strategies.

  • 10 authors
·
Jun 12, 2025 3

SPSA-FSR: Simultaneous Perturbation Stochastic Approximation for Feature Selection and Ranking

This manuscript presents the following: (1) an improved version of the Binary Simultaneous Perturbation Stochastic Approximation (SPSA) Method for feature selection in machine learning (Aksakalli and Malekipirbazari, Pattern Recognition Letters, Vol. 75, 2016) based on non-monotone iteration gains computed via the Barzilai and Borwein (BB) method, (2) its adaptation for feature ranking, and (3) comparison against popular methods on public benchmark datasets. The improved method, which we call SPSA-FSR, dramatically reduces the number of iterations required for convergence without impacting solution quality. SPSA-FSR can be used for feature ranking and feature selection both for classification and regression problems. After a review of the current state-of-the-art, we discuss our improvements in detail and present three sets of computational experiments: (1) comparison of SPSA-FS as a (wrapper) feature selection method against sequential methods as well as genetic algorithms, (2) comparison of SPSA-FS as a feature ranking method in a classification setting against random forest importance, chi-squared, and information main methods, and (3) comparison of SPSA-FS as a feature ranking method in a regression setting against minimum redundancy maximum relevance (MRMR), RELIEF, and linear correlation methods. The number of features in the datasets we use range from a few dozens to a few thousands. Our results indicate that SPSA-FS converges to a good feature set in no more than 100 iterations and therefore it is quite fast for a wrapper method. SPSA-FS also outperforms popular feature selection as well as feature ranking methods in majority of test cases, sometimes by a large margin, and it stands as a promising new feature selection and ranking method.

  • 6 authors
·
Apr 15, 2018

SteerFace: Debiasing Synthetic Face Generation via Adaptive Residue Perturbation

The shortage of legally compliant data for face recognition training has sparked growing interest in using synthetic data as an alternative. While recent diffusion-based methods enable the generation of photorealistic face images with strong identity adherence and data diversity, their downstream recognition performance still exhibits a significant synthetic-real gap. This paper identifies visual tendency as a previously underexplored limitation, whereby synthetic data exhibit an unrealistic prevalence of visual attributes and thus deviate from the real-data distribution. Visual tendency can be attributed to the generator's conditioning on identity embeddings, through which co-occurring residual visual cues are unintentionally absorbed into learned identity semantics. To discourage the generator from exploiting such visual cues, this paper proposes SteerFace, a simple and efficient training framework that perturbs identity embeddings by steering them toward random orthogonal directions on the embedding hypersphere. The perturbation serves as an identity-preserving regularizer that penalizes the generator's reliance on non-identity components, as supported by theoretical analysis. This paper further introduces an adaptive strategy that learns perturbation strengths with both sample-wise preference and favorable overall statistics. Extensive experiments show that SteerFace effectively mitigates visual tendency, outperforms prior methods in downstream face recognition, and generalizes well across different training datasets and generation pipelines.

  • 8 authors
·
May 28

Parallel Successive Cancellation Perturbation-Enhanced Decoding of Polar Codes via Offline Variance Design

Successive cancellation perturbation-enhanced (SCP) decoding improves the performance of finite-length polar codes by performing multiple SC decoding attempts with receiver-side perturbations. However, many existing perturbation schemes generate or update subsequent perturbations according to the outcomes of previous decoding attempts, resulting in additional decoding latency. In this paper, we propose an offline variance design (OVD) method for parallel SCP (PSCP) decoding of short- and medium-length polar codes. First, we formulate the exact recovery objective conditioned on ordinary SC failure and classify failed frames by the position of the first genie-aided intrinsic error and the number of subsequent intrinsic errors. We also derive a consistent Gaussian representation of the perturbed channel that preserves min-sum SC hard decisions. Second, we construct a class-based approximation of the recovery objective using Gaussian approximation and backward recursions, accounting for both error correction and new errors introduced by perturbations. We prove that both the exact and analytical objectives are nondecreasing and exhibit diminishing marginal gains as independent branches are added. Third, we develop a greedy algorithm to select variances from a finite candidate set for a given code, signal-to-noise ratio (SNR), and number of perturbation branches. All variances are determined offline, allowing the original SC branch and all perturbation branches to start simultaneously. Simulations for rate-1/2 polar codes of lengths 64, 128, 256, and 512 show that OVD-PSCP achieves lower block error rates (BLERs) than conventional SCP with the same number of perturbation branches. The gains are larger for shorter codes and increase as the number of perturbation branches grows.

  • 3 authors
·
Sep 27

Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling

A central task in virtual cell modeling is predicting single-cell transcriptional responses to unseen genetic perturbations and drug combinations, and biological networks provide valuable priors on gene relationships. Existing graph-based models commonly use the same network to structure gene representations and mediate intergene interactions, thereby implicitly treating stable associations as perturbation-response pathways. Gene Ontology and control-derived coexpression networks encode relatively stable relationships rather than intervention-specific response directions or magnitudes. We therefore propose GeneGeoFlow, which conditions a control-anchored residual flow on gene-wise geometry derived from biological networks to learn intervention-specific transcriptional responses. GeneGeoFlow derives multi-scale spectral coordinates from Gene Ontology and control-derived coexpression networks. A perturbation-conditioned, gene-wise gating module selects relevant structural scales and network sources, yielding intervention-specific gene geometry. The resulting geometry conditions a control-anchored residual flow without explicitly propagating target-derived signals along the graph. Condition-wise optimal transport couples unpaired control and perturbed populations for training, while a Delta-correlation objective aligns the predicted and observed condition-level expression-shift directions. GeneGeoFlow achieves Pearson Delta scores of 0.8979 on the Norman additive benchmark and 0.9088 on five held-out drug combinations in the fixed ComboSciPlex test split. These results support perturbation-conditioned gene geometry as an effective structural prior for intervention-specific response prediction, without conflating stable gene relationships with response propagation.

  • 13 authors
·
Aug 6

Detecting Adversarial Data by Probing Multiple Perturbations Using Expected Perturbation Score

Adversarial detection aims to determine whether a given sample is an adversarial one based on the discrepancy between natural and adversarial distributions. Unfortunately, estimating or comparing two data distributions is extremely difficult, especially in high-dimension spaces. Recently, the gradient of log probability density (a.k.a., score) w.r.t. the sample is used as an alternative statistic to compute. However, we find that the score is sensitive in identifying adversarial samples due to insufficient information with one sample only. In this paper, we propose a new statistic called expected perturbation score (EPS), which is essentially the expected score of a sample after various perturbations. Specifically, to obtain adequate information regarding one sample, we perturb it by adding various noises to capture its multi-view observations. We theoretically prove that EPS is a proper statistic to compute the discrepancy between two samples under mild conditions. In practice, we can use a pre-trained diffusion model to estimate EPS for each sample. Last, we propose an EPS-based adversarial detection (EPS-AD) method, in which we develop EPS-based maximum mean discrepancy (MMD) as a metric to measure the discrepancy between the test sample and natural samples. We also prove that the EPS-based MMD between natural and adversarial samples is larger than that among natural samples. Extensive experiments show the superior adversarial detection performance of our EPS-AD.

  • 7 authors
·
May 25, 2023