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Sep 2

A Spectral Identifiability Threshold for Dissipative Rate Recovery from Truncated Liouvillian Spectra

Open quantum systems lose energy and phase coherence through different dissipative processes, but these processes can produce overlapping dynamical signatures. The Liouvillian spectrum summarizes how such a system relaxes, yet it is not obvious how much of that spectrum is needed to distinguish the underlying dissipation rates. We study this question for amplitude damping and dephasing in a six-qubit Lindblad model whose spectrum can be derived analytically. We retain only the slowest non-steady spectral modes and ask how many are required before each dissipative rate becomes recoverable. We show that population modes contain no dephasing information, which creates a lower bound of D = 2^n retained modes for uniform dephasing identifiability in the relevant rate regime. The measured recovery threshold reaches this bound at n = 4,5,6, while n = 3 remains above it. At n = 6, least squares achieves a mean joint absolute error of order 10^-9, compared with 4.355 x 10^-4 for four tabular learning methods. Robustness tests show that this advantage weakens when the spectra are perturbed and when a transverse field breaks the commuting structure. These results show that the amount and structure of retained spectral information can determine whether dissipative parameters are recoverable, independently of the estimator used. The present conclusions apply to noise-free simulator spectra rather than measurement-derived spectra.

  • 2 authors
·
Aug 28

Empirically evaluating commonsense intelligence in large language models with large-scale human judgments

Commonsense intelligence in machines is often assessed by static benchmarks that compare a model's output against human-prescribed correct labels. An important, albeit implicit, assumption of these labels is that they accurately capture what any human would think, effectively treating human common sense as homogeneous. However, recent empirical work has shown that humans vary enormously in what they consider commonsensical; thus what appears self-evident to one benchmark designer may not be so to another. Here, we propose a novel method for evaluating common sense in artificial intelligence (AI), specifically in large language models (LLMs), that incorporates empirically observed heterogeneity among humans by measuring the correspondence between a model's judgment and that of a human population. We first find that, when treated as independent survey respondents, most LLMs remain below the human median in their individual commonsense competence. Second, when used as simulators of a hypothetical population, LLMs correlate with real humans only modestly in the extent to which they agree on the same set of statements. In both cases, smaller, open-weight models are surprisingly more competitive than larger, proprietary frontier models. Our evaluation framework, which ties commonsense intelligence to its cultural basis, contributes to the growing call for adapting AI models to human collectivities that possess different, often incompatible, social stocks of knowledge.

Large Population Models

Many of society's most pressing challenges, from pandemic response to supply chain disruptions to climate adaptation, emerge from the collective behavior of millions of autonomous agents making decisions over time. Large Population Models (LPMs) offer an approach to understand these complex systems by simulating entire populations with realistic behaviors and interactions at unprecedented scale. LPMs extend traditional modeling approaches through three key innovations: computational methods that efficiently simulate millions of agents simultaneously, mathematical frameworks that learn from diverse real-world data streams, and privacy-preserving communication protocols that bridge virtual and physical environments. This allows researchers to observe how agent behavior aggregates into system-level outcomes and test interventions before real-world implementation. While current AI advances primarily focus on creating "digital humans" with sophisticated individual capabilities, LPMs develop "digital societies" where the richness of interactions reveals emergent phenomena. By bridging individual agent behavior and population-scale dynamics, LPMs offer a complementary path in AI research illuminating collective intelligence and providing testing grounds for policies and social innovations before real-world deployment. We discuss the technical foundations and some open problems here. LPMs are implemented by the AgentTorch framework (github.com/AgentTorch/AgentTorch)

  • 1 authors
·
Jul 14, 2025

Leslie Population Models in Predator-prey and Competitive populations: theory and applications by machine learning

We introduce a new predator-prey model by replacing the growth and predation constant by a square matrix, and the population density as a population vector. The classical Lotka-Volterra model describes a population that either modulates or converges. Stability analysis of such models have been extensively studied by the works of Merdan (https://doi.org/10.1016/j.chaos.2007.06.062). The new model adds complexity by introducing an age group structure where the population of each age group evolves as prescribed by the Leslie matrix. The added complexity changes the behavior of the model such that the population either displays roughly an exponential growth or decay. We first provide an exact equation that describes a time evolution and use analytic techniques to obtain an approximate growth factor. We also discuss the variants of the Leslie model, i.e., the complex value predator-prey model and the competitive model. We then prove the Last Species Standing theorem that determines the dominant population in the large time limit. The recursive structure of the model denies the application of simple regression. We discuss a machine learning scheme that allows an admissible fit for the population evolution of Paramecium Aurelia and Paramecium Caudatum. Another potential avenue to simplify the computation is to use the machinery of quantum operators. We demonstrate the potential of this approach by computing the Hamiltonian of a simple Leslie system.

  • 5 authors
·
Dec 20, 2024

LLM Economist: Large Population Models and Mechanism Design in Multi-Agent Generative Simulacra

We present the LLM Economist, a novel framework that uses agent-based modeling to design and assess economic policies in strategic environments with hierarchical decision-making. At the lower level, bounded rational worker agents -- instantiated as persona-conditioned prompts sampled from U.S. Census-calibrated income and demographic statistics -- choose labor supply to maximize text-based utility functions learned in-context. At the upper level, a planner agent employs in-context reinforcement learning to propose piecewise-linear marginal tax schedules anchored to the current U.S. federal brackets. This construction endows economic simulacra with three capabilities requisite for credible fiscal experimentation: (i) optimization of heterogeneous utilities, (ii) principled generation of large, demographically realistic agent populations, and (iii) mechanism design -- the ultimate nudging problem -- expressed entirely in natural language. Experiments with populations of up to one hundred interacting agents show that the planner converges near Stackelberg equilibria that improve aggregate social welfare relative to Saez solutions, while a periodic, persona-level voting procedure furthers these gains under decentralized governance. These results demonstrate that large language model-based agents can jointly model, simulate, and govern complex economic systems, providing a tractable test bed for policy evaluation at the societal scale to help build better civilizations.

  • 6 authors
·
Jul 21, 2025 1

CKBP v2: Better Annotation and Reasoning for Commonsense Knowledge Base Population

Commonsense Knowledge Bases (CSKB) Population, which aims at automatically expanding knowledge in CSKBs with external resources, is an important yet hard task in NLP. Fang et al. (2021a) proposed a CSKB Population (CKBP) framework with an evaluation set CKBP v1. However, CKBP v1 relies on crowdsourced annotations that suffer from a considerable number of mislabeled answers, and the evaluationset lacks alignment with the external knowledge source due to random sampling. In this paper, we introduce CKBP v2, a new high-quality CSKB Population evaluation set that addresses the two aforementioned issues by employing domain experts as annotators and incorporating diversified adversarial samples to make the evaluation data more representative. We show that CKBP v2 serves as a challenging and representative evaluation dataset for the CSKB Population task, while its development set aids in selecting a population model that leads to improved knowledge acquisition for downstream commonsense reasoning. A better population model can also help acquire more informative commonsense knowledge as additional supervision signals for both generative commonsense inference and zero-shot commonsense question answering. Specifically, the question-answering model based on DeBERTa-v3-large (He et al., 2023b) even outperforms powerful large language models in a zero-shot setting, including ChatGPT and GPT-3.5.

  • 7 authors
·
Apr 20, 2023

Synthetic stellar spectra to study multiple populations in globular clusters: an extended grid and the effects on the integrated light

Most Galactic Globular Clusters (GCs) harbour multiple populations of stars (MPs), composed of at least two generations: the first characterized by a "standard" α-enhanced metal mixture, as observed in field halo stars of the Milky Way, and the second displaying anti-correlated CN--ONa chemical abundance pattern in combination with an enhanced helium fraction. Adequate collections of stellar spectra are needed to characterize the effect of such stellar abundance changes on the integrated light of GCs. We present a grid of synthetic stellar spectra covering the atmospheric parameters relevant to old stellar populations at four subsolar metallicities and two abundance patterns, representative of first- and second-generations of stars in GCs. Integrated spectra of populations were computed using our stellar grid and empirical stellar populations, namely, colour-magnitude diagrams from literature for Galactic GCs. The spectra range from 290 to 1000nm, where we measured the effect on several spectrophotometric indices due to the surface abundance variations attributed to MPs. We find non-negligible effects of the MPs on spectroscopic indices sensitive to C, N, Ca, or Na, and on Balmer indices; we also describe how MPs modify specific regions in the near-UV and near-IR that can be measured with narrow or medium photometric passbands. The effects vary with metallicity. A number of these changes remain detectable even when accounting for the stochastic fluctuations due to the finite nature of the stellar population cluster.

  • 5 authors
·
Apr 22, 2024

PRISMS. U37126, a very blue, ISM-naked starburst at z=10.255 with nearly 100% Lyman continuum escape fraction

We present very deep (~11h) JWST/MIRI low-resolution spectroscopy of the rest-frame optical emission of U37126, a UV-bright (M_UV ~ -20), mildly lensed (μsimeq 2.2) galaxy at z=10.255. The continuum emission is well detected in both NIRSpec and MIRI spectra, yet no nebular recombination or metal emission lines are observed (EW(Hbeta+[OIII])<300A and EW(Halpha)<400A, at 3sigma). Combined with the exceptionally blue UV continuum slope, beta_UV ~ -2.9, and weak/flat Balmer break, these constraints indicate a stellar population dominated by very young and massive stars with a strongly suppressed nebular contribution. Comparisons with synthetic stellar population models indicate that U37126 requires both a very high ionizing photon production efficiency, log(Xi_ion / Hz erg^-1) ~ 25.75, and a nearly unit LyC escape fraction, of fesc>86% (3sigma) based on Halpha flux limit and fesc=0.94+/-0.06 derived independently from SED fitting. The best-fit SED yields a (de-lensed) stellar mass of Mstar ~ 10^7.8 Msun and a star-formation rate of SFR~10Msun/yr (sSFR~160 Gyr^-1), that along with its very compact size, reff~61pc, yields very high stellar mass and star-formation-rate surface densities, Sigma_M ~ 3x10^3 Msun/pc^2 and Sigma_SFR ~ 400 Msun/yr/kpc^2. Together with the lack of detectable nebular emission, these properties suggest that U37126 is undergoing an ``ISM-naked'' starburst phase, possibly driven by an extremely efficient gas-to-star conversion followed by strong feedback that has cleared the remaining gas from its stellar core, allowing most LyC photons to escape. Finally, we show that even a small fraction of galaxies like U37126 (~ 3%-6%), with extreme LyC production and escape, could contribute disproportionately (~ 50%-100%) to the ionizing photon budget during cosmic reionization.

  • 34 authors
·
Feb 2

Selection Function of Clusters in Dark Energy Survey Year 3 Data from Cross-Matching with South Pole Telescope Detections

Galaxy clusters selected based on overdensities of galaxies in photometric surveys provide the largest cluster samples. Yet modeling the selection function of such samples is complicated by non-cluster members projected along the line of sight (projection effects) and the potential detection of unvirialized objects (contamination). We empirically constrain the magnitude of these effects by cross-matching galaxy clusters selected in the Dark Energy survey data with the \rdmpr, algorithm with significant detections in three South Pole Telescope surveys (SZ, pol-ECS, pol-500d). For matched clusters, we augment the \rdmpr,catalog by the SPT detection significance. For unmatched objects we use the SPT detection threshold as an upper limit on the SZe signature. Using a Bayesian population model applied to the collected multi-wavelength data, we explore various physically motivated models to describe the relationship between observed richness and halo mass. Our analysis reveals the limitations of a simple lognormal scatter model in describing the data. We rule out significant contamination by unvirialized objects at the high-richness end of the sample. While dedicated simulations offer a well-fitting calibration of projection effects, our findings suggest the presence of redshift-dependent trends that these simulations may not have captured. Our findings highlight that modeling the selection function of optically detected clusters remains a complicated challenge, requiring a combination of simulation and data-driven approaches.

  • 55 authors
·
Feb 18, 2025

EgoAdapt: A multi-stream evaluation study of adaptation to real-world egocentric user video

In egocentric action recognition a single population model is typically trained and subsequently embodied on a head-mounted device, such as an augmented reality headset. While this model remains static for new users and environments, we introduce an adaptive paradigm of two phases, where after pretraining a population model, the model adapts on-device and online to the user's experience. This setting is highly challenging due to the change from population to user domain and the distribution shifts in the user's data stream. Coping with the latter in-stream distribution shifts is the focus of continual learning, where progress has been rooted in controlled benchmarks but challenges faced in real-world applications often remain unaddressed. We introduce EgoAdapt, a benchmark for real-world egocentric action recognition that facilitates our two-phased adaptive paradigm, and real-world challenges naturally occur in the egocentric video streams from Ego4d, such as long-tailed action distributions and large-scale classification over 2740 actions. We introduce an evaluation framework that directly exploits the user's data stream with new metrics to measure the adaptation gain over the population model, online generalization, and hindsight performance. In contrast to single-stream evaluation in existing works, our framework proposes a meta-evaluation that aggregates the results from 50 independent user streams. We provide an extensive empirical study for finetuning and experience replay.

  • 6 authors
·
Jul 10, 2023

Potential Contribution of Young Pulsar Wind Nebulae to Galactic High-Energy Neutrino Emission

Pulsar wind nebulae (PWNe), especially the young ones, are among the most energetic astrophysical sources in the Galaxy. It is usually believed that the spin-down energy injected from the pulsars is converted into magnetic field and relativistic electrons, but the possible presence of proton acceleration inside PWNe cannot be ruled out. Previous works have estimated the neutrino emission from PWNe using various source catalogs measured in gamma-rays. However, such results rely on the sensitivity of TeV gamma-ray observations and may omit the contribution by unresolved sources. Here we estimate the potential neutrino emission from a synthetic population of PWNe in the Galaxy with a focus on the ones that are still in the free expansion phase. In the calculation, we model the temporal evolution of the free-expanding PWNe and consider the transport of protons inside the PWNe. The Crab nebula is treated as a standard template for young PWNe to evaluate some model parameters, such as the energy conversion fraction of relativistic protons and the target gas density for the hadronic process, which are relevant to neutrino production. In the optimistic case, the neutrino flux from the simulated young PWNe may constitute to 5% of the measured flux by IceCube around 100 TeV. At higher energy around 1 PeV, the neutrino emission from the population highly depends on the injection spectral shape, and also on the emission of the nearby prominent sources.

  • 5 authors
·
Jan 15, 2025

Population Based Training of Neural Networks

Neural networks dominate the modern machine learning landscape, but their training and success still suffer from sensitivity to empirical choices of hyperparameters such as model architecture, loss function, and optimisation algorithm. In this work we present Population Based Training (PBT), a simple asynchronous optimisation algorithm which effectively utilises a fixed computational budget to jointly optimise a population of models and their hyperparameters to maximise performance. Importantly, PBT discovers a schedule of hyperparameter settings rather than following the generally sub-optimal strategy of trying to find a single fixed set to use for the whole course of training. With just a small modification to a typical distributed hyperparameter training framework, our method allows robust and reliable training of models. We demonstrate the effectiveness of PBT on deep reinforcement learning problems, showing faster wall-clock convergence and higher final performance of agents by optimising over a suite of hyperparameters. In addition, we show the same method can be applied to supervised learning for machine translation, where PBT is used to maximise the BLEU score directly, and also to training of Generative Adversarial Networks to maximise the Inception score of generated images. In all cases PBT results in the automatic discovery of hyperparameter schedules and model selection which results in stable training and better final performance.

  • 12 authors
·
Nov 27, 2017

ProfileFoundry: A Synthetic Person-Object Substrate for Privacy, Memory, and Tool-Use Evaluation in LLM Agent

Foundation-model research increasingly needs data about people: user state, personal histories, relationships, contact-like fields, documents, and longitudinal updates. Real user data is difficult to share, perturb, audit, or redistribute responsibly, while independently generated fake fields rarely preserve the cross-field and temporal consistency needed for controlled evaluation. We present PROFILEFOUNDRY, a deterministic generator and fixed reference release of 100,000 adult synthetic Person Objects across eight locales. Each object combines a typed current snapshot, household, family, and employer links, snapshot-aligned events, normalized relational views, and generation provenance. The release contains 709,228 events, 40,338 households, 52,491 employers, and 518,564 directed relationship edges. We report evidence in separate categories: selected population-marginal comparisons, per-object invariant checks, release-wide referential and temporal closure, and coincidence/provenance screens. PROFILEFOUNDRY is not a population-fidelity model, a rendered-text corpus, or a formal privacy mechanism. Instead, it is a responsible synthetic source layer for constructing downstream foundation-model evaluations involving memory, privacy, document understanding, record linkage, and agent state while keeping the synthetic person behind each artifact inspectable

  • 2 authors
·
Jun 23

Exploring the Current Star Formation Rate and Nebula Ratio of Star-Formation Galaxies at z < 0.4 with FADO

The star formation rate is a crucial astrophysical tracer for understanding the formation and evolution of galaxies, determining the interaction between interstellar medium properties and star formation, thereby inferring the evolutionary laws of cosmic star formation history and cosmic energy density. The mainstream approach to studying the stellar property in galaxies relies on pure stellar population synthesis models. However, these methods fail to account for the contamination of SFR caused by nebular gas radiation. Recent studies have indicated that neglecting nebular radiation contamination appears non-negligible in galaxies with intense star-forming activities and at relatively high redshifts, potentially leading to overestimating stellar masses. However, there is currently limited targeted research, particularly regarding galaxies at redshifts (z < 0.4). In this work, 6,511 star-formation galaxies are selected from the SDSS-DR18, and FADO fits their spectra. This tool can exclude nebular radiation contributions in the spectral fitting. A tentative work is carried out to explore the SFR of these galaxies. The results indicate that the median \( H_{\alpha} \) flux obtained from FADO fitting differs from that obtained using the pure stellar population synthesis model {\it qsofitmore} by approximately 0.034 dex. Preliminary evidence suggests that the average nebula ratio increases with redshift. Additionally, we investigated the impact of stellar mass on the nebula ratio at low to moderate redshifts. By comparing two spectral fitting software packages, we found that although the contribution of nebular emission is minimal, it generally shows an increasing trend with redshift. We anticipate that by combining optical and near-infrared spectral data, the influence of nebulae may become more prominent in star-forming galaxies at higher redshifts (e.g., up to z sim 2).

  • 5 authors
·
Apr 11, 2024

Divergent Gaze Patterns in Artistic Viewing: Spatial and Temporal Signatures of Attention Across Autistic Individuals, Artists, and Neurotypical Observers

How different populations visually explore artworks bears on cognitive science and on accessibility design, yet most eye-tracking work in autism has used social scenes rather than art, and has analysed where the eyes land while ignoring when and in what order. We present a comparative free-viewing study across three groups, autistic adults (ASD), trained artists, and neurotypical observers, who each viewed 30 paintings for 15s. We introduce a directed, metric-grounded framework that compares groups along two complementary axes: a spatial axis, in which one group's fixation-density map predicts another's fixations under six saliency metrics (AUC-Judd, NSS, CC, SIM, KL, Information Gain); and a temporal axis, in which individual scanpaths are compared with MultiMatch, ScanMatch, a foveal-disc IoU score (FDISS), and dynamic time warping (DTW). Fixations are extracted uniformly for all groups with a dispersion-threshold algorithm. Three results converge. (i)Artists and neurotypicals are almost indistinguishable in both space (density-map correlation CC=0.96) and time (they form the most alignable scanpath pair), whereas ASD gaze diverges from both. (ii)ASD attention is dissociated: it matches artists' wide spatial exploration (dispersion, explored area) but carries a distinct temporal signature, shorter fixations, less dwell, and the most idiosyncratic (least self-consistent) scanpaths of any group. (iii)ASD gaze is not selectively artist-like on any metric; if anything it is marginally closer to neurotypical. Together these findings indicate that autistic viewing of art is a distinct, group-specific attentional profile in both space and time, and they motivate population-conditioned models of aesthetic attention. We release all analysis code and per-stimulus results.

  • 10 authors
·
Jul 15

MOIRCS Deep Survey. X. Evolution of Quiescent Galaxies as a Function of Stellar Mass at 0.5<z<2.5

We study the evolution of quiescent galaxies at 0.5<z<2.5 as a function of stellar mass, using very deep NIR imaging data taken with the Multi-Object Infrared Camera and Spectrograph on the Subaru Telescope in the GOODS-North region. The deep NIR data allow us to construct a stellar mass-limited sample of quiescent galaxies down to ~10^{10} Msun even at z~2 for the first time. We selected quiescent galaxies with age/tau>6 by performing SED fitting of the multi broad-band photometry from the U to Spitzer 5.8um bands with the population synthesis model of Bruzual & Charlot (2003) where exponentially decaying star formation histories are assumed. The number density of quiescent galaxies increases by a factor of ~3 from 1.0<z<1.5 to 0.5<z<1.0, and by a factor of ~10 from 1.5<z<2.5 to 0.5<z<1.0, while that of star-forming galaxies with age/tau<4 increases only by factors of ~2 and ~3 in the same redshift ranges. At 0.5<z<2.5, the low-mass slope of the stellar mass function of quiescent galaxies is alpha ~ 0 -- 0.6, which is significantly flatter than those of star-forming galaxies (alpha ~ -1.3 -- -1.5). As a result, the fraction of quiescent galaxies in the overall galaxy population increases with stellar mass in the redshift range. The fraction of quiescent galaxies at 10^{11}-10^{11.5} Msun increases from ~20-30% at z~2 to ~40-60% at z~0.75, while that at 10^{10}-10^{10.5} Msun increases from <~ 5% to ~15% in the same redshift range. These results could suggest that the quenching of star formation had been more effective in more massive galaxies at 1<~z<~2. Such a mass-dependent quenching could explain the rapid increase of the number density of ~M* galaxies relative to lower-mass galaxies at z >~ 1-1.5.

  • 7 authors
·
Jan 19, 2011

How can the use of different modes of survey data collection introduce bias? A simple introduction to mode effects using directed acyclic graphs (DAGs)

Survey data are self-reported data collected directly from respondents by a questionnaire or an interview and are commonly used in epidemiology. Such data are traditionally collected via a single mode (e.g. face-to-face interview alone), but use of mixed-mode designs (e.g. offering face-to-face interview or online survey) has become more common. This introduces two key challenges. First, individuals may respond differently to the same question depending on the mode; these differences due to measurement are known as 'mode effects'. Second, different individuals may participate via different modes; these differences in sample composition between modes are known as 'mode selection'. Where recognised, mode effects are often handled by straightforward approaches such as conditioning on survey mode. However, while reducing mode effects, this and other equivalent approaches may introduce collider bias in the presence of mode selection. The existence of mode effects and the consequences of na\"ive conditioning may be underappreciated in epidemiology. This paper offers a simple introduction to these challenges using directed acyclic graphs by exploring a range of possible data structures. We discuss the potential implications of using conditioning- or imputation-based approaches and outline the advantages of quantitative bias analyses for dealing with mode effects.

  • 4 authors
·
Oct 1, 2025

Population Aware Diffusion for Time Series Generation

Diffusion models have shown promising ability in generating high-quality time series (TS) data. Despite the initial success, existing works mostly focus on the authenticity of data at the individual level, but pay less attention to preserving the population-level properties on the entire dataset. Such population-level properties include value distributions for each dimension and distributions of certain functional dependencies (e.g., cross-correlation, CC) between different dimensions. For instance, when generating house energy consumption TS data, the value distributions of the outside temperature and the kitchen temperature should be preserved, as well as the distribution of CC between them. Preserving such TS population-level properties is critical in maintaining the statistical insights of the datasets, mitigating model bias, and augmenting downstream tasks like TS prediction. Yet, it is often overlooked by existing models. Hence, data generated by existing models often bear distribution shifts from the original data. We propose Population-aware Diffusion for Time Series (PaD-TS), a new TS generation model that better preserves the population-level properties. The key novelties of PaD-TS include 1) a new training method explicitly incorporating TS population-level property preservation, and 2) a new dual-channel encoder model architecture that better captures the TS data structure. Empirical results in major benchmark datasets show that PaD-TS can improve the average CC distribution shift score between real and synthetic data by 5.9x while maintaining a performance comparable to state-of-the-art models on individual-level authenticity.

  • 5 authors
·
Jan 1, 2025 2

Langevin Flows for Modeling Neural Latent Dynamics

Neural populations exhibit latent dynamical structures that drive time-evolving spiking activities, motivating the search for models that capture both intrinsic network dynamics and external unobserved influences. In this work, we introduce LangevinFlow, a sequential Variational Auto-Encoder where the time evolution of latent variables is governed by the underdamped Langevin equation. Our approach incorporates physical priors -- such as inertia, damping, a learned potential function, and stochastic forces -- to represent both autonomous and non-autonomous processes in neural systems. Crucially, the potential function is parameterized as a network of locally coupled oscillators, biasing the model toward oscillatory and flow-like behaviors observed in biological neural populations. Our model features a recurrent encoder, a one-layer Transformer decoder, and Langevin dynamics in the latent space. Empirically, our method outperforms state-of-the-art baselines on synthetic neural populations generated by a Lorenz attractor, closely matching ground-truth firing rates. On the Neural Latents Benchmark (NLB), the model achieves superior held-out neuron likelihoods (bits per spike) and forward prediction accuracy across four challenging datasets. It also matches or surpasses alternative methods in decoding behavioral metrics such as hand velocity. Overall, this work introduces a flexible, physics-inspired, high-performing framework for modeling complex neural population dynamics and their unobserved influences.

  • 5 authors
·
Jul 15, 2025

A Unified, Scalable Framework for Neural Population Decoding

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size and datasets. However, the integration of many neural recordings into one unified model is challenging, as each recording contains the activity of different neurons from different individual animals. In this paper, we introduce a training framework and architecture designed to model the population dynamics of neural activity across diverse, large-scale neural recordings. Our method first tokenizes individual spikes within the dataset to build an efficient representation of neural events that captures the fine temporal structure of neural activity. We then employ cross-attention and a PerceiverIO backbone to further construct a latent tokenization of neural population activities. Utilizing this architecture and training framework, we construct a large-scale multi-session model trained on large datasets from seven nonhuman primates, spanning over 158 different sessions of recording from over 27,373 neural units and over 100 hours of recordings. In a number of different tasks, we demonstrate that our pretrained model can be rapidly adapted to new, unseen sessions with unspecified neuron correspondence, enabling few-shot performance with minimal labels. This work presents a powerful new approach for building deep learning tools to analyze neural data and stakes out a clear path to training at scale.

  • 10 authors
·
Oct 23, 2023

Fluctuations and correlations in chemical reaction kinetics and population dynamics

This chapter provides a pedagogical introduction and overview of spatial and temporal correlation and fluctuation effects resulting from the fundamentally stochastic kinetics underlying chemical reactions and the dynamics of populations or epidemics. After reviewing the assumptions and mean-field type approximations involved in the construction of chemical rate equations for uniform reactant densities, we first discuss spatial clustering in birth-death systems, where non-linearities are introduced through either density-limiting pair reactions, or equivalently via local imposition of finite carrying capacities. The competition of offspring production, death, and non-linear inhibition induces a population extinction threshold, which represents a non-equilibrium phase transition that separates active from absorbing states. This continuous transition is characterized by the universal scaling exponents of critical directed percolation clusters. Next we focus on the emergence of depletion zones in single-species annihilation processes and spatial population segregation with the associated reaction fronts in two-species pair annihilation. These strong (anti-)correlation effects are dynamically generated by the underlying stochastic kinetics. Finally, we address noise-induced and fluctuation-stabilized spatio-temporal patterns in basic predator-prey systems, exemplified by spreading activity fronts in the two-species Lotka-Volterra model as well as spiral structures in the May-Leonard variant of cyclically competing three-species systems akin to rock-paper-scissors games.

  • 1 authors
·
Jul 3, 2018

From Individual to Society: A Survey on Social Simulation Driven by Large Language Model-based Agents

Traditional sociological research often relies on human participation, which, though effective, is expensive, challenging to scale, and with ethical concerns. Recent advancements in large language models (LLMs) highlight their potential to simulate human behavior, enabling the replication of individual responses and facilitating studies on many interdisciplinary studies. In this paper, we conduct a comprehensive survey of this field, illustrating the recent progress in simulation driven by LLM-empowered agents. We categorize the simulations into three types: (1) Individual Simulation, which mimics specific individuals or demographic groups; (2) Scenario Simulation, where multiple agents collaborate to achieve goals within specific contexts; and (3) Society Simulation, which models interactions within agent societies to reflect the complexity and variety of real-world dynamics. These simulations follow a progression, ranging from detailed individual modeling to large-scale societal phenomena. We provide a detailed discussion of each simulation type, including the architecture or key components of the simulation, the classification of objectives or scenarios and the evaluation method. Afterward, we summarize commonly used datasets and benchmarks. Finally, we discuss the trends across these three types of simulation. A repository for the related sources is at {https://github.com/FudanDISC/SocialAgent}.

  • 11 authors
·
Dec 4, 2024