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Oct 16

Kinetic wave activity and proton heating in 3D hybrid simulations of decaying balanced and imbalanced Alfvénic turbulence

We investigate turbulent dynamics from large to sub-proton scales, the kinetic wave activity and resulting proton heating in three-dimensional hybrid-kinetic simulations of freely decaying balanced and imbalanced Alfvénic turbulence. We considered initial fluctuations with same amplitude and spectral shape but different degrees of correlation between velocity and magnetic field perturbations (i.e., normalized cross-helicity), which define the corresponding turbulent regimes. We found that our balanced turbulence simulation exhibits stronger energy dissipation and more efficient proton heating compared to the imbalanced case. On the large fluid scales, the two simulations undergo distinct nonlinear dynamic and energy cascades, leading to different spectral properties once turbulence is well developed. At sub-proton scales, fluctuations are predominantly oblique with right-hand polarization, a property common to both regimes. In contrast, only the imbalanced simulation displays substantial wave power parallel to the guide magnetic field, with clear signatures of ion-cyclotron waves. These waves are excited in regions with strong temperature anisotropy that arise during the initial nonlinear steepening of Alfvénic fluctuations, a process that simultaneously generates parallel-propagating proton beams. Furthermore, non-Maxwellian features emerge in velocity space, indicating different heating mechanisms in balanced and imbalanced regimes and providing evidence for the role of kinetic instabilities in regulating the turbulent dynamics. Overall, these results show that cross-helicity is a key parameter controlling the large-scale evolution, kinetic activity, and energy dissipation in collisionless turbulent plasmas.

  • 4 authors
·
Oct 7

On the Acceleration of the Young Solar Wind from Different Source Regions

The acceleration of the young solar wind is studied using the first 17 encounters of Parker Solar Probe. We identify wind intervals from different source regions: coronal hole (CH) interiors, streamers, and low Mach number boundary layers (LMBLs), i.e. the inner boundaries of coronal holes. We present their statistical trends in the acceleration process. Most of the observations can be reproduced by a two-fluid hydrodynamic model with realistic corona temperatures. In such a model, the solar wind is accelerated by the combined thermal pressures of protons and electrons,but it is mainly the difference in the proton pressure that leads to the difference in the solar wind speed. The proton pressure is the highest in the fastest CH wind, with a high initial proton temperature that decreases slowly. It is lower in the relatively slow LMBL wind, and the lowest in the slowest streamer wind. The proton temperature is quadratically correlated with the wind speed when scaled to the same distance. In contrast, the electron temperature shows no significant differences for different wind types or wind speeds, indicating more similar contributions from the electron pressure. The model gives reasonable locations for the sonic critical point, which is on average at 3.6-7.3 solar radii and can also extend to large distances when the proton temperature is extremely low, as in the LMBL wind. In addition to the thermal pressure, we raise the possibility that Alfvén waves may contribute to the solar wind acceleration, especially for the fast CH wind.

  • 5 authors
·
Oct 21, 2024

Cancer and electromagnetic radiation therapy: Quo Vadis?

In oncology, treating cancer with a beam of photons is a well established therapeutic technique, developed over 100 years, and today over 50% of cancer patients will undergo traditional X-ray radiotherapy. However, ionizing radiation therapy is not the only option, as the high-energy photons delivering their cell-killing radiation energy into cancerous tumor can lead to significant damage to healthy tissues surrounding the tumor, located throughout the beam's path. Therefore, in nowadays, advances in ionizing radiation therapy are competitive to non-ionizing ones, as for example the laser light based therapy, resulting in a synergism that has revolutionized medicine. The use of non-invasive or minimally invasive (e.g. through flexible endoscopes) therapeutic procedures in the management of patients represents a very interesting treatment option. Moreover, as the major breakthrough in cancer management is the individualized patient treatment, new biophotonic techniques, e.g. photo-activated drug carriers, help the improvement of treatment efficacy and/or normal tissue toxicity. Additionally, recent studies support that laser technology progresses could revolutionize cancer proton therapy, by reducing the cost of the needed installations. The aim of this review is to present some laser-based future objectives for cancer radiation therapy, aiming to address the relevant advances in the ionizing and non-ionizing radiation therapy, i.e. protons and heavy ions therapy, as well as photodynamic targeted and molecular therapies.

  • 1 authors
·
Feb 5, 2016

Proton Irradiation Characterization of an Open-Source ML Accelerator on a Zynq UltraScale+ MPSoC

As spaceborne computing systems increasingly rely on neural network (NN) accelerators, the opacity of commercial, black-box architectures severely restricts the development of verifiable radiation mitigation strategies. Open-source, register-transfer level (RTL)-accessible accelerators resolve this limitation by enabling user-defined instrumentation, yet few have empirical radiation-response baselines. This work establishes a foundational system-level proton-irradiation baseline for an unmitigated open-source Tensil NN accelerator deployed on a Zynq UltraScale+ SoC executing ResNet-20 inference. Under 20 to 58 MeV proton irradiation, we delivered 4.29 times 10^{10} p/cm^{2} within monitored operational windows. Seven workload interruptions required two restarts of the notebook process, four reboots or board resets, and one power-cycle sequence. Two output-corruption events returned incorrect CIFAR-10 classes without loss of service. In the longer event, the accelerator returned a class absent from the ten-image CIFAR-10 pool for 39 consecutive inputs at normal cadence. The process remained alive, while the kernel log, limited memory test, and sampled power showed no anomaly. Observation of the stuck-class sequence ended with scheduled bitstream reconfiguration. All nine onsets occurred under the nominal 4 cm beam, which exposed the SoC, LPDDR4, and additional board circuitry; none occurred under the 2 cm SoC-centered field. This pattern shows a field association but does not establish LPDDR4 as the cause because field size was confounded with run order and dose. Linux-managed accelerators require end-to-end content checks and recovery that reaches the state in which corruption can persist. This baseline documents availability loss and silent output corruption, supporting future software hardening of COTS FPGA-SoCs for neural-network inference in space systems.

  • 6 authors
·
Sep 3

Mesoscale Turbulence in Type Ia Supernova Deflagrations II. Evidence for Fuel Preheat Due to Flame Thermal Expansion from Lagrangian Analysis

Thermonuclear flame fronts in Type Ia supernovae develop hydrodynamic instabilities that generate turbulent mesoscale flow and substantial local thermodynamic variability. Recent work by Brooker+25 demonstrated systematic shortening of fuel ignition times near Rayleigh--Taylor unstable deflagration fronts, but the physical origin remained unclear. We investigate the thermodynamic evolution of fuel near the flame front using multidimensional simulations and Lagrangian tracer-particle analysis, focusing on flame-driven expansion and ignition-time variability in partially degenerate carbon--oxygen plasma. Tracer trajectories show that the most strongly preconditioned fuel parcels near the flame front, which form a minority of the fuel layer, undergo approximately pressure-constrained expansion with modest density reductions and temperature increases of approx 2times10^{8}~K to approx7times10^{8}~K (approx13 to 63 per cent above the unperturbed fuel temperature) between the low- and high-density models. Despite moderate thermodynamic perturbations, the strong temperature sensitivity of carbon ignition produces substantial shortening of ignition times. The results indicate a two-step mechanism: flame thermal expansion perturbs the fuel away from hydrostatic equilibrium, while restoration of pressure balance by weak acoustic waves redistributes internal energy from degenerate to thermal components. This raises the fuel temperature and produces localized thermodynamic preconditioning. These results suggest that unsteady thermonuclear flames can shorten ignition times ahead of the flame, influencing fuel over distances larger than the laminar flame thickness. Whether this preconditioning leads to secondary ignition or contributes to deflagration-to-detonation transition remains untested here, as nuclear burning is disabled in the analyzed fuel.

  • 3 authors
·
Oct 1

Localized Heating and Dynamics of the Solar Corona due to a Symbiosis of Waves and Reconnection

The Sun's outer atmosphere, the corona, is maintained at mega-Kelvin temperatures and fills the heliosphere with a supersonic outflowing wind. The dissipation of magnetic waves and direct electric currents are likely to be the most significant processes for heating the corona, but a lively debate exists on their relative roles. Here, we suggest that the two are often intrinsically linked, since magnetic waves may trigger current dissipation, and impulsive reconnection can launch magnetic waves. We present a study of the first of these processes by using a 2D physics-based numerical simulation using the Adaptive Mesh Refined (AMR) Versatile Advection Code (VAC). Magnetic waves such as fast magnetoacoustic waves are often observed to propagate in the large-scale corona and interact with local magnetic structures. The present numerical simulations show how the propagation of magnetic disturbances towards a null point or separator can lead to the accumulation of the electric currents. Lorentz forces can laterally push and vertically stretch the magnetic fields, forming a current sheet with a strong magnetic-field gradient. The magnetic field lines then break and reconnect, and so contribute towards coronal heating. Numerical results are presented that support these ideas and support the concept of a symbiosis between waves and reconnection in heating the solar corona.

  • 9 authors
·
Mar 20, 2025

Constraints on Cosmic Rays Acceleration in Bright Gamma-ray Bursts with Observations of Fermi

Gamma-ray bursts (GRBs) are widely suggested as potential sources of ultrahigh-energy cosmic rays (UHECRs). The kinetic energy of the jets dissipates, leading to the production of an enormous amount of gamma-ray photons and possibly also the acceleration of protons. The accelerated protons will interact with the radiation of the GRB via the photomeson and Bethe-Heitler processes, which can initiate electromagnetic cascades. This process can give rise to broadband radiation up to the GeV-TeV gamma-ray regime. The expected gamma-ray flux from cascades depends on properties of the GRB jet, such as the dissipation radius R_{rm diss}, the bulk Lorentz factor Gamma, and the baryon loading factor eta_p. Therefore, observations of Fermi-LAT can impose constraints on these important parameters. In this study, we select 12 GRBs of high keV-MeV fluence and constrain the baryon loading factor, under different combinations of the bulk Lorentz factor and the dissipation radius based on Fermi-LAT's measurements. Our findings indicate a strong constraint of eta_p<10 for most selected GRBs over a large parameter space except for large dissipation radii (gtrsim 10^{15}rm cm) and high bulk Lorentz factors (gtrsim 600). The constraint is comparable to, and in some GRBs even stronger than, that from high-energy neutrinos for stacked GRBs. Our results suggest that for typical bulk Lorentz factor of several hundreds, the dissipation radii of GRBs need be large to avoid overshooting the GeV gamma-ray flux during the prompt emission phase of GRBs, which can be used to constrain GRBs.

  • 6 authors
·
Jan 16, 2025

Modeling transport in weakly collisional plasmas using thermodynamic forcing

How momentum, energy, and magnetic fields are transported in the presence of macroscopic gradients is a fundamental question in plasma physics. Answering this question is especially challenging for weakly collisional, magnetized plasmas, where macroscopic gradients influence the plasma's microphysical structure. In this paper, we introduce thermodynamic forcing, a new method for systematically modeling how macroscopic gradients in magnetized or unmagnetized plasmas shape the distribution functions of constituent particles. In this method, we propose to apply an anomalous force to those particles inducing the anisotropy that would naturally emerge due to macroscopic gradients in weakly collisional plasmas. We implement thermodynamic forcing in particle-in-cell (TF-PIC) simulations using a modified Vay particle pusher and validate it against analytic solutions of the equations of motion. We then carry out a series of simulations of electron-proton plasmas with periodic boundary conditions using TF-PIC. First, we confirm that the properties of two electron-scale kinetic instabilities -- one driven by a temperature gradient and the other by pressure anisotropy -- are consistent with previous results. Then, we demonstrate that in the presence of multiple macroscopic gradients, the saturated state can differ significantly from current expectations. This work enables, for the first time, systematic and self-consistent transport modeling in weakly collisional plasmas, with broad applications in astrophysics, laser-plasma physics, and inertial confinement fusion.

  • 2 authors
·
Apr 18, 2025

TPCpp-10M: Simulated proton-proton collisions in a Time Projection Chamber for AI Foundation Models

Scientific foundation models hold great promise for advancing nuclear and particle physics by improving analysis precision and accelerating discovery. Yet, progress in this field is often limited by the lack of openly available large scale datasets, as well as standardized evaluation tasks and metrics. Furthermore, the specialized knowledge and software typically required to process particle physics data pose significant barriers to interdisciplinary collaboration with the broader machine learning community. This work introduces a large, openly accessible dataset of 10 million simulated proton-proton collisions, designed to support self-supervised training of foundation models. To facilitate ease of use, the dataset is provided in a common NumPy format. In addition, it includes 70,000 labeled examples spanning three well defined downstream tasks: track finding, particle identification, and noise tagging, to enable systematic evaluation of the foundation model's adaptability. The simulated data are generated using the Pythia Monte Carlo event generator at a center of mass energy of sqrt(s) = 200 GeV and processed with Geant4 to include realistic detector conditions and signal emulation in the sPHENIX Time Projection Chamber at the Relativistic Heavy Ion Collider, located at Brookhaven National Laboratory. This dataset resource establishes a common ground for interdisciplinary research, enabling machine learning scientists and physicists alike to explore scaling behaviors, assess transferability, and accelerate progress toward foundation models in nuclear and high energy physics. The complete simulation and reconstruction chain is reproducible with the sPHENIX software stack. All data and code locations are provided under Data Accessibility.

  • 13 authors
·
Sep 5, 2025

Evidence for Widespread Hydrogen Sequestration within the Moon's South Polar Cold Traps

The measured neutron flux from the Moons south polar region shows evidence of locally enhanced hydrogen concentrations, likely in the form of water ice, within most permanently shadowed regions (PSR), poleward of 77 deg S latitude. Results are consistent with the original findings of Watson et al, 1961, which found that the PSRs cryogenic surfaces create exclusive conditions for the sequestration of water ice, due to their extremely low sublimation rates. Widespread PSR hydrogenation is demonstrated in several studies by showing that the contrasting PSR area distribution is being instrumentally blurred. The PSRs expected hydrogen observations are correlated by their area fraction of the fixed 30 km diameter footprint area of the Collimated Sensor for Epithermal Neutrons (CSETN), which is part of the Lunar Exploration Neutron Detector (LEND) onboard the Lunar Reconnaissance Orbiter (LRO). The correlation indicates that the PSRs are similarly hydrogenated, with an expected concentration = 0.27 wt%, relative to that of the anhydrous reference terrain (lower bounds). Hydrogen concentrations are demonstrated to be correlated to maximum temperature distributions within the basins of Haworth, Shoemaker and Faustini PSRs. Cabeus-1 PSR shows an anomalously enhanced hydrogen concentration indicating a second process contributes to its hydrogen budget. Results are consistent with ongoing processes that introduce volatiles to the surface including outgassing, solar wind production with regolith silicates, and mixing from small scale meteor impacts and diurnal temperature variation. We validate the bandpass filter used to subtract CSETNs detection of uncollimated neutrons with profiles of several PSRs neutron suppression before and after processing. Keywords: Moon, Epithermal Neutron, Hydrogen, Water, Ice, Volatiles, LRO, LEND, Diviner, LOLA

  • 8 authors
·
Mar 7, 2023

Enabling Domain-Specific Atomistic Models: A Machine Learning Potential for the Solid Acid Family

Machine-learned interatomic potentials trained across the periodic table have made atomistic simulation broadly accessible, and specializing them to a single compound class is widely expected to improve accuracy. Yet examples remain scarce, and fewer still surpass universal models in speed or reach a higher level of electronic-structure theory. Here we present a potential that is universal within the class of water-free solid-state hydrogen-bond network mediated proton conductors rather than across chemistry and a database of 4.4 million first-principles configurations spanning 55 materials. It surpasses leading general-purpose potentials across this domain, recovering measured activation energies and the ordering of anion rotational dynamics that those models miss; agreement on static structure does not imply agreement on transport. Accuracy falls for compositions far from the training set but stays competitive for close structural relatives, and a higher level of electronic-structure theory is reached with a few hundred additional configurations per material. We further introduce a compact variant carrying a fifth of the parameters, faster still and yet more accurate than every general-purpose model tested. It sustains more than a quarter of a million atoms on a single graphics processor, placing grain boundaries and the transition into the highly conducting phase within reach, and making a quantum treatment of the protons affordable. Reference accuracy and accessible system size thus become largely independent, offering a template for other compound classes.

  • 3 authors
·
Sep 28

Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems

Neurological diseases are the leading global cause of disability, yet most lack disease-modifying treatments. We present PROTON, a heterogeneous graph transformer that generates testable hypotheses across molecular, organoid, and clinical systems. To evaluate PROTON, we apply it to Parkinson's disease (PD), bipolar disorder (BD), and Alzheimer's disease (AD). In PD, PROTON linked genetic risk loci to genes essential for dopaminergic neuron survival and predicted pesticides toxic to patient-derived neurons, including the insecticide endosulfan, which ranked within the top 1.29% of predictions. In silico screens performed by PROTON reproduced six genome-wide α-synuclein experiments, including a split-ubiquitin yeast two-hybrid system (normalized enrichment score [NES] = 2.30, FDR-adjusted p < 1 times 10^{-4}), an ascorbate peroxidase proximity labeling assay (NES = 2.16, FDR < 1 times 10^{-4}), and a high-depth targeted exome sequencing study in 496 synucleinopathy patients (NES = 2.13, FDR < 1 times 10^{-4}). In BD, PROTON predicted calcitriol as a candidate drug that reversed proteomic alterations observed in cortical organoids derived from BD patients. In AD, we evaluated PROTON predictions in health records from n = 610,524 patients at Mass General Brigham, confirming that five PROTON-predicted drugs were associated with reduced seven-year dementia risk (minimum hazard ratio = 0.63, 95% CI: 0.53-0.75, p < 1 times 10^{-7}). PROTON generated neurological hypotheses that were evaluated across molecular, organoid, and clinical systems, defining a path for AI-driven discovery in neurological disease.

  • 29 authors
·
Dec 13, 2025

Proton emission half-lives and shape coexistence for 71 leq Z leq 83 odd-Z nuclei

One-proton emission is a direct probe of nuclear structure near the proton drip line and plays a critical role in understanding exotic decay modes and nucleosynthesis processes. In this study, we investigate the half-lives of one-proton emitters for 71 leq Z leq 83 odd-Z nuclei by employing the WKB approximation with nuclear potentials obtained from the deformed relativistic Hartree-Bogoliubov theory in continuum (DRHBc) and, for comparison, the relativistic continuum Hartree-Bogoliubov theory (RCHB). We first compare the calculated half-lives with available experimental data. The inclusion of quadrupole deformation via the DRHBc hardly contributes to improving the predictions of half-lives for the deformed nuclei. We find that all the studied nuclei exhibit ground states with |β_{2,{rm DRHBc}}| < 0.15, and within this limited deformation range the spectroscopic factor provides the dominant contribution to the half-life, compared to the decay width. In particular, for nuclei exhibiting shape coexistence in DRHBc, such as ^{170}Au, where the half-life varies significantly with the quadrupole deformation through its effect on the spectroscopic factor, we expect shape coexistence to exert a substantial influence on the variation of half-lives. Finally, we discuss the half-lives in consideration of shape coexistence. Our results indicate that the calculated half-life is governed not by the total-energy difference between coexisting minima but rather by the spectroscopic factor influenced by the deformation.

  • 3 authors
·
Aug 19