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Jun 29

EAG-PT: Emission-Aware Gaussians and Path Tracing for Indoor Scene Reconstruction and Editing

Recent reconstruction methods based on radiance field such as NeRF and 3DGS reproduce indoor scenes with high visual fidelity, but break down under scene editing due to baked illumination and the lack of explicit light transport. In contrast, physically based inverse rendering relies on mesh representations and path tracing, which enforce correct light transport but place strong requirements on geometric fidelity, becoming a practical bottleneck for real indoor scenes. In this work, we propose Emission-Aware Gaussians and Path Tracing (EAG-PT), aiming for physically based light transport with a unified 2D Gaussian representation. Our design is based on three cores: (1) using 2D Gaussians as a unified scene representation and transport-friendly geometry proxy that avoids reconstructed mesh, (2) explicitly separating emissive and non-emissive components during reconstruction for further scene editing, and (3) decoupling reconstruction from final rendering by using efficient single-bounce optimization and high-quality multi-bounce path tracing after scene editing. Experiments on synthetic and real indoor scenes show that EAG-PT produces more natural and physically consistent renders after editing than radiant scene reconstructions, while preserving finer geometric detail and avoiding mesh-induced artifacts compared to mesh-based inverse path tracing. These results suggest promising directions for future use in interior design, XR content creation, and embodied AI.

  • 9 authors
·
Jan 30

Retrieval-Augmented Generation for Predicting Cellular Responses to Gene Perturbation

Predicting how cells respond to genetic perturbations is fundamental to understanding gene function, disease mechanisms, and therapeutic development. While recent deep learning approaches have shown promise in modeling single-cell perturbation responses, they struggle to generalize across cell types and perturbation contexts due to limited contextual information during generation. We introduce PT-RAG (Perturbation-aware Two-stage Retrieval-Augmented Generation), a novel framework that extends Retrieval-Augmented Generation beyond traditional language-model applications to cellular biology. Unlike standard RAG systems designed for text retrieval with pre-trained LLMs, perturbation retrieval lacks established similarity metrics and requires learning what constitutes relevant context, making differentiable retrieval essential. PT-RAG addresses this through a two-stage pipeline: first, retrieving candidate perturbations K using GenePT embeddings, then adaptively refining the selection through Gumbel-Softmax discrete sampling conditioned on both the cell state and the input perturbation. This cell-type-aware differentiable retrieval enables end-to-end optimization of the retrieval objective jointly with generation. On the Replogle-Nadig single-gene perturbation dataset, we demonstrate that PT-RAG outperforms both STATE and vanilla RAG under identical experimental conditions, with the strongest gains in distributional similarity metrics (W_1, W_2). Notably, vanilla RAG's dramatic failure is itself a key finding: it demonstrates that differentiable, cell-type-aware retrieval is essential in this domain, and that naive retrieval can actively harm performance. Our results establish retrieval-augmented generation as a promising paradigm for modelling cellular responses to gene perturbation. The code to reproduce our experiments is available at https://github.com/difra100/PT-RAG_ICLR.

DePT: Decomposed Prompt Tuning for Parameter-Efficient Fine-tuning

Prompt tuning (PT), where a small amount of trainable soft (continuous) prompt vectors is affixed to the input of language models (LM), has shown promising results across various tasks and models for parameter-efficient fine-tuning (PEFT). PT stands out from other PEFT approaches because it maintains competitive performance with fewer trainable parameters and does not drastically scale up its parameters as the model size expands. However, PT introduces additional soft prompt tokens, leading to longer input sequences, which significantly impacts training and inference time and memory usage due to the Transformer's quadratic complexity. Particularly concerning for Large Language Models (LLMs) that face heavy daily querying. To address this issue, we propose Decomposed Prompt Tuning (DePT), which decomposes the soft prompt into a shorter soft prompt and a pair of low-rank matrices that are then optimised with two different learning rates. This allows DePT to achieve better performance while saving over 20% memory and time costs compared to vanilla PT and its variants, without changing trainable parameter sizes. Through extensive experiments on 23 natural language processing (NLP) and vision-language (VL) tasks, we demonstrate that DePT outperforms state-of-the-art PEFT approaches, including the full fine-tuning baseline in some scenarios. Additionally, we empirically show that DEPT grows more efficient as the model size increases. Our further study reveals that DePT integrates seamlessly with parameter-efficient transfer learning in the few-shot learning setting and highlights its adaptability to various model architectures and sizes.

  • 2 authors
·
Sep 10, 2023 1

GS-DiT: Advancing Video Generation with Pseudo 4D Gaussian Fields through Efficient Dense 3D Point Tracking

4D video control is essential in video generation as it enables the use of sophisticated lens techniques, such as multi-camera shooting and dolly zoom, which are currently unsupported by existing methods. Training a video Diffusion Transformer (DiT) directly to control 4D content requires expensive multi-view videos. Inspired by Monocular Dynamic novel View Synthesis (MDVS) that optimizes a 4D representation and renders videos according to different 4D elements, such as camera pose and object motion editing, we bring pseudo 4D Gaussian fields to video generation. Specifically, we propose a novel framework that constructs a pseudo 4D Gaussian field with dense 3D point tracking and renders the Gaussian field for all video frames. Then we finetune a pretrained DiT to generate videos following the guidance of the rendered video, dubbed as GS-DiT. To boost the training of the GS-DiT, we also propose an efficient Dense 3D Point Tracking (D3D-PT) method for the pseudo 4D Gaussian field construction. Our D3D-PT outperforms SpatialTracker, the state-of-the-art sparse 3D point tracking method, in accuracy and accelerates the inference speed by two orders of magnitude. During the inference stage, GS-DiT can generate videos with the same dynamic content while adhering to different camera parameters, addressing a significant limitation of current video generation models. GS-DiT demonstrates strong generalization capabilities and extends the 4D controllability of Gaussian splatting to video generation beyond just camera poses. It supports advanced cinematic effects through the manipulation of the Gaussian field and camera intrinsics, making it a powerful tool for creative video production. Demos are available at https://wkbian.github.io/Projects/GS-DiT/.

  • 6 authors
·
Jan 5, 2025 3

Decouple before Align: Visual Disentanglement Enhances Prompt Tuning

Prompt tuning (PT), as an emerging resource-efficient fine-tuning paradigm, has showcased remarkable effectiveness in improving the task-specific transferability of vision-language models. This paper delves into a previously overlooked information asymmetry issue in PT, where the visual modality mostly conveys more context than the object-oriented textual modality. Correspondingly, coarsely aligning these two modalities could result in the biased attention, driving the model to merely focus on the context area. To address this, we propose DAPT, an effective PT framework based on an intuitive decouple-before-align concept. First, we propose to explicitly decouple the visual modality into the foreground and background representation via exploiting coarse-and-fine visual segmenting cues, and then both of these decoupled patterns are aligned with the original foreground texts and the hand-crafted background classes, thereby symmetrically strengthening the modal alignment. To further enhance the visual concentration, we propose a visual pull-push regularization tailored for the foreground-background patterns, directing the original visual representation towards unbiased attention on the region-of-interest object. We demonstrate the power of architecture-free DAPT through few-shot learning, base-to-novel generalization, and data-efficient learning, all of which yield superior performance across prevailing benchmarks. Our code will be released at https://github.com/Ferenas/DAPT.

  • 6 authors
·
Aug 1, 2025

Chain-of-Models Pre-Training: Rethinking Training Acceleration of Vision Foundation Models

In this paper, we present Chain-of-Models Pre-Training (CoM-PT), a novel performance-lossless training acceleration method for vision foundation models (VFMs). This approach fundamentally differs from existing acceleration methods in its core motivation: rather than optimizing each model individually, CoM-PT is designed to accelerate the training pipeline at the model family level, scaling efficiently as the model family expands. Specifically, CoM-PT establishes a pre-training sequence for the model family, arranged in ascending order of model size, called model chain. In this chain, only the smallest model undergoes standard individual pre-training, while the other models are efficiently trained through sequential inverse knowledge transfer from their smaller predecessors by jointly reusing the knowledge in the parameter space and the feature space. As a result, CoM-PT enables all models to achieve performance that is mostly superior to standard individual training while significantly reducing training cost, and this is extensively validated across 45 datasets spanning zero-shot and fine-tuning tasks. Notably, its efficient scaling property yields a remarkable phenomenon: training more models even results in higher efficiency. For instance, when pre-training on CC3M: i) given ViT-L as the largest model, progressively prepending smaller models to the model chain reduces computational complexity by up to 72%; ii) within a fixed model size range, as the VFM family scales across 3, 4, and 7 models, the acceleration ratio of CoM-PT exhibits a striking leap: from 4.13X to 5.68X and 7.09X. Since CoM-PT is naturally agnostic to specific pre-training paradigms, we open-source the code to spur further extensions in more computationally intensive scenarios, such as large language model pre-training.

  • 5 authors
·
Apr 13

Qihoo-T2X: An Efficiency-Focused Diffusion Transformer via Proxy Tokens for Text-to-Any-Task

The global self-attention mechanism in diffusion transformers involves redundant computation due to the sparse and redundant nature of visual information, and the attention map of tokens within a spatial window shows significant similarity. To address this redundancy, we propose the Proxy Token Diffusion Transformer (PT-DiT), which employs sparse representative token attention (where the number of representative tokens is much smaller than the total number of tokens) to model global visual information efficiently. Specifically, in each transformer block, we randomly sample one token from each spatial-temporal window to serve as a proxy token for that region. The global semantics are captured through the self-attention of these proxy tokens and then injected into all latent tokens via cross-attention. Simultaneously, we introduce window and shift window attention to address the limitations in detail modeling caused by the sparse attention mechanism. Building on the well-designed PT-DiT, we further develop the Qihoo-T2X family, which includes a variety of models for T2I, T2V, and T2MV tasks. Experimental results show that PT-DiT achieves competitive performance while reducing the computational complexity in both image and video generation tasks (e.g., a 48% reduction compared to DiT and a 35% reduction compared to Pixart-alpha). Our source code is available at https://github.com/360CVGroup/Qihoo-T2X.

  • 6 authors
·
Sep 5, 2024 4

REACCEPT: Automated Co-evolution of Production and Test Code Based on Dynamic Validation and Large Language Models

Synchronizing production and test code, known as PT co-evolution, is critical for software quality in the software development lifecycle. Existing methods for automatic PT co-evolution either utilize predefined heuristic rules or rely on simple application of machine learning techniques. Due to the limitations of underlying techniques, existing methods either only partially automate PT co-evolution (e.g., only automate obsolete test code identification) or result in low accuracy. In this paper, we propose REACCEPT, a novel approach that leverages large language models and dynamic validation to fully automate PT co-evolution (i.e., capable of both identifying and updating obsolete test cases). REACCEPT relies on experience-based prompt template generation, dynamic validation, and retrieval-augmented generation techniques to accomplish automated PT co-evolution. To evaluate REACCEPT's effectiveness, we extensive experiments with a dataset of 537 Java projects and compared REACCEPT's performance with several state-of-the-art methods. Results show that REACCEPT achieved an update accuracy of 60.16% on correctly identified obsolete test code, surpassing the state-of-the-art technique CEPROT by 90%. This confirms that REACCEPT can effectively assist developers in maintaining test code, improving overall software quality and reducing maintenance effort.

  • 7 authors
·
Nov 17, 2024

NorBERTo: A ModernBERT Model Trained for Portuguese with 331 Billion Tokens Corpus

High-quality corpora are essential for advancing Natural Language Processing (NLP) in Portuguese. Building on previous encoder-only models such as BERTimbau and Albertina PT-BR, we introduce NorBERTo, a modern encoder based on the ModernBERT architecture, featuring long-context support and efficient attention mechanisms. NorBERTo is trained on Aurora-PT, a newly curated Brazilian Portuguese corpus comprising 331 billion GPT-2 tokens collected from diverse web sources and existing multilingual datasets. We systematically benchmark NorBERTo against Strong baselines on semantic similarity, textual entailment and classification tasks using standardized datasets such as ASSIN 2 and PLUE. On PLUE, NorBERTo-large achieves the best results among the encoder models we evaluated, notably reaching 0.9191 F1 on MRPC and 0.7689 accuracy on RTE. On ASSIN 2, NorBERTo-large attains the highest entailment F1 (~0.904) among all encoders considered, although Albertina-900M and BERTimbau-large still hold an advantage. To the best of our knowledge, Aurora-PT is currently the largest openly available monolingual Portuguese corpus, surpassing previous resources. NorBERTo provides a modern, mid-sized encoder designed for realistic deployment scenarios: it is straight-forward to fine-tune, efficient to serve, and well suited as a backbone for retrieval-augmented generation and other downstream Portuguese NLP systems.

  • 11 authors
·
Apr 29

Precision Is Not Faithfulness: Coverage-Aware Evaluation of Grounded Generation with a Complete Oracle

Reference-free faithfulness metrics verify each atomic claim a model makes against ground truth, and are increasingly used to evaluate grounded generation. We show they share a blind spot: they measure only precision -- are the stated claims supported? -- and therefore reward abstention, since a model can score near-perfect faithfulness by saying almost nothing. We make this measurable using Formula 1 telemetry, a domain where strategic ground truth is derived deterministically and, crucially, completely: for each decision we know the full set of facts that mattered. This completeness -- absent in open-domain faithfulness benchmarks -- lets us measure recall (coverage of the relevant facts) exactly, alongside precision. On a multilingual (EN/ES/PT) benchmark of 7,253 decision instances spanning 150 races, the most precise frontier model covers under half of the relevant facts and ranks last by F1, so requiring coverage reorders the systems; the same effect reappears in a second complete-oracle domain (NOAA weather forecasts). A prompt ablation shows the low coverage is not an under-prompting artifact: explicitly asking models to be thorough does not close the gap. We pair faithfulness with coverage into a single score, validate the metric (controlled perturbation; agreement across a model-free regex extractor and a cross-family LLM extractor, system-level Spearman 1.0), and give a verifier-guided generation method that improves precision and recall without references. We release the benchmark, structured annotations, metric, baselines, and an interactive demo.

  • 1 authors
·
Jun 7 6

Can Pre-trained Networks Detect Familiar Out-of-Distribution Data?

Out-of-distribution (OOD) detection is critical for safety-sensitive machine learning applications and has been extensively studied, yielding a plethora of methods developed in the literature. However, most studies for OOD detection did not use pre-trained models and trained a backbone from scratch. In recent years, transferring knowledge from large pre-trained models to downstream tasks by lightweight tuning has become mainstream for training in-distribution (ID) classifiers. To bridge the gap between the practice of OOD detection and current classifiers, the unique and crucial problem is that the samples whose information networks know often come as OOD input. We consider that such data may significantly affect the performance of large pre-trained networks because the discriminability of these OOD data depends on the pre-training algorithm. Here, we define such OOD data as PT-OOD (Pre-Trained OOD) data. In this paper, we aim to reveal the effect of PT-OOD on the OOD detection performance of pre-trained networks from the perspective of pre-training algorithms. To achieve this, we explore the PT-OOD detection performance of supervised and self-supervised pre-training algorithms with linear-probing tuning, the most common efficient tuning method. Through our experiments and analysis, we find that the low linear separability of PT-OOD in the feature space heavily degrades the PT-OOD detection performance, and self-supervised models are more vulnerable to PT-OOD than supervised pre-trained models, even with state-of-the-art detection methods. To solve this vulnerability, we further propose a unique solution to large-scale pre-trained models: Leveraging powerful instance-by-instance discriminative representations of pre-trained models and detecting OOD in the feature space independent of the ID decision boundaries. The code will be available via https://github.com/AtsuMiyai/PT-OOD.

  • 4 authors
·
Oct 1, 2023

Context-aware Prompt Tuning: Advancing In-Context Learning with Adversarial Methods

Fine-tuning Large Language Models (LLMs) typically involves updating at least a few billions of parameters. A more parameter-efficient approach is Prompt Tuning (PT), which updates only a few learnable tokens, and differently, In-Context Learning (ICL) adapts the model to a new task by simply including examples in the input without any training. When applying optimization-based methods, such as fine-tuning and PT for few-shot learning, the model is specifically adapted to the small set of training examples, whereas ICL leaves the model unchanged. This distinction makes traditional learning methods more prone to overfitting; in contrast, ICL is less sensitive to the few-shot scenario. While ICL is not prone to overfitting, it does not fully extract the information that exists in the training examples. This work introduces Context-aware Prompt Tuning (CPT), a method inspired by ICL, PT, and adversarial attacks. We build on the ICL strategy of concatenating examples before the input, but we extend this by PT-like learning, refining the context embedding through iterative optimization to extract deeper insights from the training examples. We carefully modify specific context tokens, considering the unique structure of input and output formats. Inspired by adversarial attacks, we adjust the input based on the labels present in the context, focusing on minimizing, rather than maximizing, the loss. Moreover, we apply a projected gradient descent algorithm to keep token embeddings close to their original values, under the assumption that the user-provided data is inherently valuable. Our method has been shown to achieve superior accuracy across multiple classification tasks using various LLM models.

  • 5 authors
·
Oct 22, 2024

Extend Model Merging from Fine-Tuned to Pre-Trained Large Language Models via Weight Disentanglement

Merging Large Language Models (LLMs) aims to amalgamate multiple homologous LLMs into one with all the capabilities. Ideally, any LLMs sharing the same backbone should be mergeable, irrespective of whether they are Fine-Tuned (FT) with minor parameter changes or Pre-Trained (PT) with substantial parameter shifts. However, existing methods often manually assign the model importance, rendering them feasible only for LLMs with similar parameter alterations, such as multiple FT LLMs. The diverse parameter changed ranges between FT and PT LLMs pose challenges for current solutions in empirically determining the optimal combination. In this paper, we make a pioneering effort to broaden the applicability of merging techniques from FT to PT LLMs. We initially examine the efficacy of current methods in merging FT and PT LLMs, discovering that they struggle to deal with PT LLMs. Subsequently, we introduce an approach based on WeIght DisENtanglement (WIDEN) to effectively extend the merging scope, which first disentangles model weights into magnitude and direction components, and then performs adaptive fusion by considering their respective contributions. In the experiments, we merge Qwen1.5-Chat (an FT LLM with instruction-following skills) with Sailor (a PT LLM with multilingual abilities) across 7B and 14B model scales. Results reveal that: (1) existing solutions usually fail when merging Sailor, either losing both abilities or only retaining instruction-following skills; (2) WIDEN successfully injects the multilingual abilities of Sailor into Qwen1.5-Chat and make it proficient in Southeast Asian languages, achieving enhancements in the fundamental capabilities. In light of previous research, we also merge multiple 13B FT LLMs and observe that WIDEN achieves a balanced amalgamation of instruction following, mathematical reasoning, and code generation skills.

  • 5 authors
·
Aug 6, 2024

A Comparative Study of DSL Code Generation: Fine-Tuning vs. Optimized Retrieval Augmentation

Natural Language to Code Generation has made significant progress in recent years with the advent of Large Language Models(LLMs). While generation for general-purpose languages like C, C++, and Python has improved significantly, LLMs struggle with custom function names in Domain Specific Languages or DSLs. This leads to higher hallucination rates and syntax errors, specially for DSLs having a high number of custom function names. Additionally, constant updates to function names add to the challenge as LLMs need to stay up-to-date. In this paper, we present optimizations for using Retrieval Augmented Generation (or RAG) with LLMs for DSL generation along with an ablation study comparing these strategies. We generated a train as well as test dataset with a DSL to represent automation tasks across roughly 700 APIs in public domain. We used the training dataset to fine-tune a Codex model for this DSL. Our results showed that the fine-tuned model scored the best on code similarity metric. With our RAG optimizations, we achieved parity for similarity metric. The compilation rate, however, showed that both the models still got the syntax wrong many times, with RAG-based method being 2 pts better. Conversely, hallucination rate for RAG model lagged by 1 pt for API names and by 2 pts for API parameter keys. We conclude that an optimized RAG model can match the quality of fine-tuned models and offer advantages for new, unseen APIs.

  • 2 authors
·
Jul 2, 2024

Complementary Probes of Warped Extra Dimension: Colliders, Gravitational Waves and Primordial Black Holes from Phase Transitions

We study the formation of primordial black holes (PBHs) and stochastic gravitational waves background (SGWB) produced by the supercooled radion phase transition (PT) in warped extra-dimension models solving the gauge hierarchy problem. We first determine how the SGWB and the produced PBH mass and abundance depend on the warped model's infrared energy scale rho, and the number of holographic colors N. With this finding, we recast on the plane {rho, N} the current SGWB and PBH constraints, as well as the expected parameter reaches of GW detectors, as LISA and ET, and the gravitational lensing ones, such as NGRST. On the same plane, we also map the collider bounds on massive graviton production, and cosmological bounds on the radion phenomenology. We find that, for N sim 10-50, the considered PT predicts a PBH population mass in the range M_{rm PBH}sim(10^{-1} - 10^{-25}) M_{odot} for rho sim (10^{-4} - 10^{8}) TeV. In the range rho simeq (0.05 - 0.5) GeV, it can explain the recent SGWB hint at nHz frequencies and generate PBH binaries with mass M_{rm PBH}sim(0.1 - 1 ) M_odot detectable at LISA and ET. The experimentally allowed mass region where PBHs can account for the whole dark matter abundance, and are produced with a tuning lesssim 10^{-4}, corresponds to 10 TeV lesssim rholesssim 10^4 TeV. These PBHs can compensate the lack of natural candidates for dark matter in warped extra dimensional models. Such a region represents a great science case where forthcoming and future colliders like HE-LHC and FCC-hh, gravitational-wave observatories and other PBHs probes play a key complementary role.

  • 4 authors
·
Feb 5, 2025

Imaginative Perception Tokens Enhance Spatial Reasoning in Multimodal Language Models

Vision language models (VLMs) excel at many tasks but still struggle with spatial reasoning when critical information is not directly observable. Many such problems require imaginative perception: inferring what would be seen from an unseen viewpoint, tracing paths through occluded spaces, or integrating partial observations into a coherent spatial representation. We introduce Imaginative Perception Tokens (IPT), intermediate perceptual representations that externalize what a VLM would perceive under alternative spatial configurations while remaining consistent with the observed input. To study this capability, we formulate three tasks, Perspective Taking (PET), Path Tracing (PT), and Multiview Counting (MVC), and construct datasets of approximately 20K examples with ground truth imaginations, answers, and evaluation benchmarks. Using the unified VLM BAGEL as the backbone, IPT supervision consistently improves spatial reasoning and often outperforms textual chain of thought training, even without generating images at inference time. On MVC, IPT improves accuracy by 3.4% and achieves competitive performance with strong closed-source models on PT. We further find that combining IPT and label-only supervision yields additional gains, whereas textual chain of thought can substantially degrade performance, suggesting a modality mismatch when spatial computation is forced through language. Overall, IPT provides a principled supervision signal for reasoning about unobserved spatial structure, improving generalization while producing interpretable intermediate representations.

Enhanced Climbing Image Nudged Elastic Band method with Hessian Eigenmode Alignment

Accurate determination of transition states is central to an understanding of reaction kinetics. Double-endpoint methods where both initial and final states are specified, such as the climbing image nudged elastic band (CI-NEB), identify the minimum energy path between the two and thereby the saddle point on the energy surface that is relevant for the given transition, thus providing an estimate of the transition state within the harmonic approximation of transition state theory. Such calculations can, however, incur high computational costs and may suffer stagnation on exceptionally flat or rough energy surfaces. Conversely, methods that only require specification of an initial set of atomic coordinates, such as the minimum mode following (MMF) method, offer efficiency but can converge on saddle points that are not relevant for transition of interest. Here, we present an adaptive hybrid algorithm that integrates the CI-NEB with the MMF method so as to get faster convergence to the relevant saddle point. The method is benchmarked for the Baker-Chan (BC) saddle point test set using the PET-MAD machine-learned potential as well as 59 transitions of a heptamer island on Pt(111) from the OptBench benchmark set. A Bayesian analysis of the performance shows a reduction in energy and force calculations of 57% [95% CrI: -64%, -50%] relative to CI-NEB for the BC set, while a 31% mean reduction is found for the transitions of the heptamer island. These results establish this hybrid method as a highly effective tool for high-throughput automated chemical discovery of atomic rearrangements.

  • 3 authors
·
Apr 6 1

Control-Plane Placement Shapes Forgetting: An Architectural Study of Agent Memory Across Thirteen System Configurations

Where an LLM sits in an agent memory pipeline -- between the recall plane that retrieves stored facts (extensively benchmarked) and the control plane that mutates them via supersede, release, purge (largely untested) -- shapes which forgetting failure modes the system recovers. Comparing thirteen system configurations on a 385-case adversarial surface, we observe three placement regimes with partly complementary coverage: deterministic primitives suffice for lexical/temporal categories but fail canonicalization (5% on identifier-obfuscation, 0% on cross-lingual); inscribe-time LLM recovers canonicalization (100%) but cannot help intent-aware deletion (0% on prefix-collision and compound-fact); a mutation-time hook recovers intent-aware deletion (78-85%) and brightens nearly all categories simultaneously (91.7-93.2% overall, $0.17 per 385-case run, 2.3s/case mutation latency vs. 64-191ms/case deterministic, recall path unchanged). We expose the trade-off via ForgetEval, a 1000-case templated suite plus a 385-case adversarial layer (132 hand-crafted + 253 LLM-drafted oracle-validated) scored by deterministic substring match, paired with a six-method Adapter Protocol with honest N/A scoring that lets heterogeneous memory stores enter in 130 lines. Admission is corroborated by 10-annotator IAA (Fleiss' kappa = 0.958) and a 77-case external-authored subset (four blind contributors) that replicates the canonicalization asymmetry and amplifies the joint-placement lift (+27.8 pt). Production failures are predominantly forgetting failures rather than recall failures, yet existing benchmarks measure only recall. ForgetEval and all adapters are released under MIT.

  • 1 authors
·
Jun 15

Physics Is All You Need? A Case Study in Physicist-Supervised AI Development of Scientific Software

Are AI agents tools, co-authors, or researchers? We present a quantified case study (N=1): a physicist supervising an AI coding agent (Claude Code, Sonnet and Opus models) over 12 work days and 57 sessions to build CLAX-PT, a differentiable one-loop perturbation theory module in JAX. We documented and classified 15 supervision events by intervention level. The agent resolved ten autonomously by iterating against oracle tests. Two more by the physicist's domain knowledge. The three it could not -- all evaded oracle detection -- share a common property: the agent treated symptom reduction as root-cause resolution. It spent 33 of the 57 sessions adjusting coefficients within a code architecture that could not represent the target physics, and could not re-evaluate its CLASS-PT branch choice even when prompted to reconsider; only an injected physics concept (anisotropic BAO damping) triggered the redesign. Separately, the agent committed a calibrated correction that passed all oracle tests but corresponded to no quantity in the theory, predicting wrong values at any other cosmology. The fudge factor was caught and replaced within the same session. Three supervision practices proved critical for catching what oracle tests missed: testing at diverse parameter points beyond the fiducial calibration; shared changelogs that surfaced stalled exploration across sessions; and an explicit rule against unphysical numerical patches. In this case, supervision design, not model capability, determined whether the agent's output was trustworthy. Closing the gap would require agents that propose architectural alternatives rather than optimize within a given structure, and distinguish predictive adequacy from explanatory correctness -- capabilities not exhibited here, not obviously addressed by scaling alone. [Abridged.]

  • 1 authors
·
May 27

TransRef: Multi-Scale Reference Embedding Transformer for Reference-Guided Image Inpainting

Image inpainting for completing complicated semantic environments and diverse hole patterns of corrupted images is challenging even for state-of-the-art learning-based inpainting methods trained on large-scale data. A reference image capturing the same scene of a corrupted image offers informative guidance for completing the corrupted image as it shares similar texture and structure priors to that of the holes of the corrupted image. In this work, we propose a transformer-based encoder-decoder network, named TransRef, for reference-guided image inpainting. Specifically, the guidance is conducted progressively through a reference embedding procedure, in which the referencing features are subsequently aligned and fused with the features of the corrupted image. For precise utilization of the reference features for guidance, a reference-patch alignment (Ref-PA) module is proposed to align the patch features of the reference and corrupted images and harmonize their style differences, while a reference-patch transformer (Ref-PT) module is proposed to refine the embedded reference feature. Moreover, to facilitate the research of reference-guided image restoration tasks, we construct a publicly accessible benchmark dataset containing 50K pairs of input and reference images. Both quantitative and qualitative evaluations demonstrate the efficacy of the reference information and the proposed method over the state-of-the-art methods in completing complex holes. Code and dataset can be accessed at https://github.com/Cameltr/TransRef.

  • 7 authors
·
Jun 20, 2023

Few-Shot Learning for Clinical Natural Language Processing Using Siamese Neural Networks

Clinical Natural Language Processing (NLP) has become an emerging technology in healthcare that leverages a large amount of free-text data in electronic health records (EHRs) to improve patient care, support clinical decisions, and facilitate clinical and translational science research. Recently, deep learning has achieved state-of-the-art performance in many clinical NLP tasks. However, training deep learning models usually requires large annotated datasets, which are normally not publicly available and can be time-consuming to build in clinical domains. Working with smaller annotated datasets is typical in clinical NLP and therefore, ensuring that deep learning models perform well is crucial for the models to be used in real-world applications. A widely adopted approach is fine-tuning existing Pre-trained Language Models (PLMs), but these attempts fall short when the training dataset contains only a few annotated samples. Few-Shot Learning (FSL) has recently been investigated to tackle this problem. Siamese Neural Network (SNN) has been widely utilized as an FSL approach in computer vision, but has not been studied well in NLP. Furthermore, the literature on its applications in clinical domains is scarce. In this paper, we propose two SNN-based FSL approaches for clinical NLP, including Pre-Trained SNN (PT-SNN) and SNN with Second-Order Embeddings (SOE-SNN). We evaluated the proposed approaches on two clinical tasks, namely clinical text classification and clinical named entity recognition. We tested three few-shot settings including 4-shot, 8-shot, and 16-shot learning. Both clinical NLP tasks were benchmarked using three PLMs, including BERT,BioBERT, and BioClinicalBERT. The experimental results verified the effectiveness of the proposed SNN-based FSL approaches in both NLP tasks.

  • 3 authors
·
Aug 31, 2022