Daily Papers

We investigate the first-order differential calculus over extended metric-topological measure spaces. The latter are quartets mathbb X=(X,τ,{sf d},mathfrak m), given by an extended metric space (X,{sf d}) together with a weaker topology τ (satisfying suitable compatibility conditions) and a finite Radon measure mathfrak m on (X,τ). The class of extended metric-topological measure spaces encompasses all metric measure spaces and many infinite-dimensional metric-measure structures, such as abstract Wiener spaces. In this framework, we study the following classes of objects: - The Banach algebra {rm Lip}_b(X,τ,{sf d}) of bounded τ-continuous {sf d}-Lipschitz functions on X. - Several notions of Lipschitz derivations on X, defined in duality with {rm Lip}_b(X,τ,{sf d}). - The metric Sobolev space W^{1,p}(mathbb X), defined in duality with Lipschitz derivations on X. Inter alia, we generalise both Weaver's and Di Marino's theories of Lipschitz derivations to the extended setting, and we discuss their connections. We also introduce a Sobolev space W^{1,p}(mathbb X) via an integration-by-parts formula, along the lines of Di Marino's notion of Sobolev space, and we prove its equivalence with other approaches, studied in the extended setting by Ambrosio, Erbar and Savaré. En route, we obtain some results of independent interest, among which are: - A Lipschitz-constant-preserving extension result for τ-continuous {sf d}-Lipschitz functions. - A novel and rather robust strategy for proving the equivalence of Sobolev-type spaces defined via an integration-by-parts formula and those obtained with a relaxation procedure. - A new description of an isometric predual of the metric Sobolev space W^{1,p}(mathbb X).

Recently, significant progress has been made in protein-ligand docking, especially in modern deep learning methods, and some benchmarks were proposed, e.g., PoseBench, Plinder. However, these benchmarks suffer from less practical evaluation setups (e.g., blind docking, self docking), or heavy framework that involves training, raising challenges to assess docking methods efficiently. To fill this gap, we proposed PoseX, an open-source benchmark focusing on self-docking and cross-docking, to evaluate the algorithmic advances practically and comprehensively. Specifically, first, we curate a new evaluation dataset with 718 entries for self docking and 1,312 for cross docking; second, we incorporate 22 docking methods across three methodological categories, including (1) traditional physics-based methods (e.g., Schr\"odinger Glide), (2) AI docking methods (e.g., DiffDock), (3) AI co-folding methods (e.g., AlphaFold3); third, we design a relaxation method as post-processing to minimize conformation energy and refine binding pose; fourth, we released a leaderboard to rank submitted models in real time. We draw some key insights via extensive experiments: (1) AI-based approaches have already surpassed traditional physics-based approaches in overall docking accuracy (RMSD). The longstanding generalization issues that have plagued AI molecular docking have been significantly alleviated in the latest models. (2) The stereochemical deficiencies of AI-based approaches can be greatly alleviated with post-processing relaxation. Combining AI docking methods with the enhanced relaxation method achieves the best performance to date. (3) AI co-folding methods commonly face ligand chirality issues, which cannot be resolved by relaxation. The code, curated dataset and leaderboard are released at https://github.com/CataAI/PoseX.

Accurate pain expression synthesis is essential for improving clinical training and human-robot interaction. Current Robotic Patient Simulators (RPSs) lack realistic pain facial expressions, limiting their effectiveness in medical training. In this work, we introduce PainDiffusion, a generative model that synthesizes naturalistic facial pain expressions. Unlike traditional heuristic or autoregressive methods, PainDiffusion operates in a continuous latent space, ensuring smoother and more natural facial motion while supporting indefinite-length generation via diffusion forcing. Our approach incorporates intrinsic characteristics such as pain expressiveness and emotion, allowing for personalized and controllable pain expression synthesis. We train and evaluate our model using the BioVid HeatPain Database. Additionally, we integrate PainDiffusion into a robotic system to assess its applicability in real-time rehabilitation exercises. Qualitative studies with clinicians reveal that PainDiffusion produces realistic pain expressions, with a 31.2% (std 4.8%) preference rate against ground-truth recordings. Our results suggest that PainDiffusion can serve as a viable alternative to real patients in clinical training and simulation, bridging the gap between synthetic and naturalistic pain expression. Code and videos are available at: https://damtien444.github.io/paindf/