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Oct 22

TEDDY: A Family Of Foundation Models For Understanding Single Cell Biology

Understanding the biological mechanism of disease is critical for medicine, and in particular drug discovery. AI-powered analysis of genome-scale biological data hold great potential in this regard. The increasing availability of single-cell RNA sequencing data has enabled the development of large foundation models for disease biology. However, existing foundation models either do not improve or only modestly improve over task-specific models in downstream applications. Here, we explored two avenues for improving the state-of-the-art. First, we scaled the pre-training dataset to 116 million cells, which is larger than those used by previous models. Second, we leveraged the availability of large-scale biological annotations as a form of supervision during pre-training. We trained the TEDDY family of models comprising six transformer-based state-of-the-art single-cell foundation models with 70 million, 160 million, and 400 million parameters. We vetted our models on two downstream evaluation tasks -- identifying the underlying disease state of held-out donors not seen during training and distinguishing healthy cells from diseased ones for disease conditions and donors not seen during training. Scaling experiments showed that performance improved predictably with both data volume and parameter count. Our models showed substantial improvement over existing work on the first task and more muted improvements on the second.

  • 16 authors
·
Mar 5, 2025

SoccerNet Game State Reconstruction: End-to-End Athlete Tracking and Identification on a Minimap

Tracking and identifying athletes on the pitch holds a central role in collecting essential insights from the game, such as estimating the total distance covered by players or understanding team tactics. This tracking and identification process is crucial for reconstructing the game state, defined by the athletes' positions and identities on a 2D top-view of the pitch, (i.e. a minimap). However, reconstructing the game state from videos captured by a single camera is challenging. It requires understanding the position of the athletes and the viewpoint of the camera to localize and identify players within the field. In this work, we formalize the task of Game State Reconstruction and introduce SoccerNet-GSR, a novel Game State Reconstruction dataset focusing on football videos. SoccerNet-GSR is composed of 200 video sequences of 30 seconds, annotated with 9.37 million line points for pitch localization and camera calibration, as well as over 2.36 million athlete positions on the pitch with their respective role, team, and jersey number. Furthermore, we introduce GS-HOTA, a novel metric to evaluate game state reconstruction methods. Finally, we propose and release an end-to-end baseline for game state reconstruction, bootstrapping the research on this task. Our experiments show that GSR is a challenging novel task, which opens the field for future research. Our dataset and codebase are publicly available at https://github.com/SoccerNet/sn-gamestate.

  • 14 authors
·
Apr 17, 2024

De-identification of Patient Notes with Recurrent Neural Networks

Objective: Patient notes in electronic health records (EHRs) may contain critical information for medical investigations. However, the vast majority of medical investigators can only access de-identified notes, in order to protect the confidentiality of patients. In the United States, the Health Insurance Portability and Accountability Act (HIPAA) defines 18 types of protected health information (PHI) that needs to be removed to de-identify patient notes. Manual de-identification is impractical given the size of EHR databases, the limited number of researchers with access to the non-de-identified notes, and the frequent mistakes of human annotators. A reliable automated de-identification system would consequently be of high value. Materials and Methods: We introduce the first de-identification system based on artificial neural networks (ANNs), which requires no handcrafted features or rules, unlike existing systems. We compare the performance of the system with state-of-the-art systems on two datasets: the i2b2 2014 de-identification challenge dataset, which is the largest publicly available de-identification dataset, and the MIMIC de-identification dataset, which we assembled and is twice as large as the i2b2 2014 dataset. Results: Our ANN model outperforms the state-of-the-art systems. It yields an F1-score of 97.85 on the i2b2 2014 dataset, with a recall 97.38 and a precision of 97.32, and an F1-score of 99.23 on the MIMIC de-identification dataset, with a recall 99.25 and a precision of 99.06. Conclusion: Our findings support the use of ANNs for de-identification of patient notes, as they show better performance than previously published systems while requiring no feature engineering.

  • 4 authors
·
Jun 10, 2016

Primate Face Identification in the Wild

Ecological imbalance owing to rapid urbanization and deforestation has adversely affected the population of several wild animals. This loss of habitat has skewed the population of several non-human primate species like chimpanzees and macaques and has constrained them to co-exist in close proximity of human settlements, often leading to human-wildlife conflicts while competing for resources. For effective wildlife conservation and conflict management, regular monitoring of population and of conflicted regions is necessary. However, existing approaches like field visits for data collection and manual analysis by experts is resource intensive, tedious and time consuming, thus necessitating an automated, non-invasive, more efficient alternative like image based facial recognition. The challenge in individual identification arises due to unrelated factors like pose, lighting variations and occlusions due to the uncontrolled environments, that is further exacerbated by limited training data. Inspired by human perception, we propose to learn representations that are robust to such nuisance factors and capture the notion of similarity over the individual identity sub-manifolds. The proposed approach, Primate Face Identification (PFID), achieves this by training the network to distinguish between positive and negative pairs of images. The PFID loss augments the standard cross entropy loss with a pairwise loss to learn more discriminative and generalizable features, thus making it appropriate for other related identification tasks like open-set, closed set and verification. We report state-of-the-art accuracy on facial recognition of two primate species, rhesus macaques and chimpanzees under the four protocols of classification, verification, closed-set identification and open-set recognition.

  • 5 authors
·
Jul 3, 2019

Untangling the Unrestricted Web: Automatic Identification of Multilingual Registers

This article explores deep learning models for the automatic identification of registers - text varieties such as news reports and discussion forums - in web-based datasets across 16 languages. Identifying web registers, or genres, is crucial for understanding the content of web-scale datasets, which have become essential in corpus and computational linguistics. Despite recent advances, the full potential of register classifiers in the noisy, unrestricted web remains largely unexplored, particularly in multilingual settings. We experiment with various deep learning models using the Multilingual CORE corpora, newly introduced in this article, which includes 16 languages annotated with a detailed, hierarchical taxonomy of 25 registers designed to cover the entire web. Our classifiers achieve state-of-the-art results using a multi-label approach, demonstrating that competitive performance is possible using a relatively complex register taxonomy. However, all models hit a performance ceiling at approximately 80% F1 score, which we attribute to the non-discrete nature of web registers and the inherent uncertainty in labeling some documents. By pruning ambiguous examples, we enhance model performance to over 90%. Additionally, multilingual models consistently outperform monolingual ones, especially benefiting languages with fewer training examples and smaller registers. Although a zero-shot setting reduces performance by an average of 7%, these drops are not correlated with specific registers or languages. Instead, we find that registers are surprisingly similar across languages.

  • 6 authors
·
Jun 28, 2024

Accurate identification and measurement of the precipitate area by two-stage deep neural networks in novel chromium-based alloys

The performance of advanced materials for extreme environments is underpinned by their microstructure, including the size and distribution of reinforcing phases. Chromium-based superalloys are a recently proposed alternative to conventional face-centred-cubic superalloys for high-temperature applications, such as Concentrated Solar Power, and their development requires efficient measurement of precipitate volume fraction and size distribution from electron microscopy images. Traditional fixed-threshold image processing is sensitive to background noise, generalises poorly across materials, and requires substantial manual measurement effort. To address these bottlenecks, this study proposes DT-SegNet, an end-to-end two-stage deep learning scheme based on YOLOv5 and SegFormer for object detection and segmentation in electron microscopy images. The approach combines the training efficiency of convolutional neural networks at the detection stage with the segmentation accuracy of a Vision Transformer. Numerical experiments show that DT-SegNet substantially outperforms state-of-the-art segmentation tools offered by Weka and ilastik across metrics including accuracy, precision, recall, and F1-score. The model provides a useful tool for alloy-development microstructure examinations and helps address the large datasets associated with high-throughput alloy development.

  • 10 authors
·
Jun 19

HaT5: Hate Language Identification using Text-to-Text Transfer Transformer

We investigate the performance of a state-of-the art (SoTA) architecture T5 (available on the SuperGLUE) and compare with it 3 other previous SoTA architectures across 5 different tasks from 2 relatively diverse datasets. The datasets are diverse in terms of the number and types of tasks they have. To improve performance, we augment the training data by using an autoregressive model. We achieve near-SoTA results on a couple of the tasks - macro F1 scores of 81.66% for task A of the OLID 2019 dataset and 82.54% for task A of the hate speech and offensive content (HASOC) 2021 dataset, where SoTA are 82.9% and 83.05%, respectively. We perform error analysis and explain why one of the models (Bi-LSTM) makes the predictions it does by using a publicly available algorithm: Integrated Gradient (IG). This is because explainable artificial intelligence (XAI) is essential for earning the trust of users. The main contributions of this work are the implementation method of T5, which is discussed; the data augmentation using a new conversational AI model checkpoint, which brought performance improvements; and the revelation on the shortcomings of HASOC 2021 dataset. It reveals the difficulties of poor data annotation by using a small set of examples where the T5 model made the correct predictions, even when the ground truth of the test set were incorrect (in our opinion). We also provide our model checkpoints on the HuggingFace hub1 to foster transparency.

  • 6 authors
·
Feb 11, 2022

Part-Aware Transformer for Generalizable Person Re-identification

Domain generalization person re-identification (DG-ReID) aims to train a model on source domains and generalize well on unseen domains. Vision Transformer usually yields better generalization ability than common CNN networks under distribution shifts. However, Transformer-based ReID models inevitably over-fit to domain-specific biases due to the supervised learning strategy on the source domain. We observe that while the global images of different IDs should have different features, their similar local parts (e.g., black backpack) are not bounded by this constraint. Motivated by this, we propose a pure Transformer model (termed Part-aware Transformer) for DG-ReID by designing a proxy task, named Cross-ID Similarity Learning (CSL), to mine local visual information shared by different IDs. This proxy task allows the model to learn generic features because it only cares about the visual similarity of the parts regardless of the ID labels, thus alleviating the side effect of domain-specific biases. Based on the local similarity obtained in CSL, a Part-guided Self-Distillation (PSD) is proposed to further improve the generalization of global features. Our method achieves state-of-the-art performance under most DG ReID settings. Under the MarkettoDuke setting, our method exceeds state-of-the-art by 10.9% and 12.8% in Rank1 and mAP, respectively. The code is available at https://github.com/liyuke65535/Part-Aware-Transformer.

  • 4 authors
·
Aug 7, 2023

Clothes-Changing Person Re-Identification with Feasibility-Aware Intermediary Matching

Current clothes-changing person re-identification (re-id) approaches usually perform retrieval based on clothes-irrelevant features, while neglecting the potential of clothes-relevant features. However, we observe that relying solely on clothes-irrelevant features for clothes-changing re-id is limited, since they often lack adequate identity information and suffer from large intra-class variations. On the contrary, clothes-relevant features can be used to discover same-clothes intermediaries that possess informative identity clues. Based on this observation, we propose a Feasibility-Aware Intermediary Matching (FAIM) framework to additionally utilize clothes-relevant features for retrieval. Firstly, an Intermediary Matching (IM) module is designed to perform an intermediary-assisted matching process. This process involves using clothes-relevant features to find informative intermediates, and then using clothes-irrelevant features of these intermediates to complete the matching. Secondly, in order to reduce the negative effect of low-quality intermediaries, an Intermediary-Based Feasibility Weighting (IBFW) module is designed to evaluate the feasibility of intermediary matching process by assessing the quality of intermediaries. Extensive experiments demonstrate that our method outperforms state-of-the-art methods on several widely-used clothes-changing re-id benchmarks.

  • 7 authors
·
Apr 15, 2024

Before It's Too Late: A State Space Model for the Early Prediction of Misinformation and Disinformation Engagement

In today's digital age, conspiracies and information campaigns can emerge rapidly and erode social and democratic cohesion. While recent deep learning approaches have made progress in modeling engagement through language and propagation models, they struggle with irregularly sampled data and early trajectory assessment. We present IC-Mamba, a novel state space model that forecasts social media engagement by modeling interval-censored data with integrated temporal embeddings. Our model excels at predicting engagement patterns within the crucial first 15-30 minutes of posting (RMSE 0.118-0.143), enabling rapid assessment of content reach. By incorporating interval-censored modeling into the state space framework, IC-Mamba captures fine-grained temporal dynamics of engagement growth, achieving a 4.72% improvement over state-of-the-art across multiple engagement metrics (likes, shares, comments, and emojis). Our experiments demonstrate IC-Mamba's effectiveness in forecasting both post-level dynamics and broader narrative patterns (F1 0.508-0.751 for narrative-level predictions). The model maintains strong predictive performance across extended time horizons, successfully forecasting opinion-level engagement up to 28 days ahead using observation windows of 3-10 days. These capabilities enable earlier identification of potentially problematic content, providing crucial lead time for designing and implementing countermeasures. Code is available at: https://github.com/ltian678/ic-mamba. An interactive dashboard demonstrating our results is available at: https://ic-mamba.behavioral-ds.science.

  • 5 authors
·
Feb 6, 2025

Uncertainty-aware Medical Diagnostic Phrase Identification and Grounding

Medical phrase grounding is crucial for identifying relevant regions in medical images based on phrase queries, facilitating accurate image analysis and diagnosis. However, current methods rely on manual extraction of key phrases from medical reports, reducing efficiency and increasing the workload for clinicians. Additionally, the lack of model confidence estimation limits clinical trust and usability. In this paper, we introduce a novel task called Medical Report Grounding (MRG), which aims to directly identify diagnostic phrases and their corresponding grounding boxes from medical reports in an end-to-end manner. To address this challenge, we propose uMedGround, a robust and reliable framework that leverages a multimodal large language model to predict diagnostic phrases by embedding a unique token, <BOX>, into the vocabulary to enhance detection capabilities. A vision encoder-decoder processes the embedded token and input image to generate grounding boxes. Critically, uMedGround incorporates an uncertainty-aware prediction model, significantly improving the robustness and reliability of grounding predictions. Experimental results demonstrate that uMedGround outperforms state-of-the-art medical phrase grounding methods and fine-tuned large visual-language models, validating its effectiveness and reliability. This study represents a pioneering exploration of the MRG task, marking the first-ever endeavor in this domain. Additionally, we demonstrate the applicability of uMedGround in medical visual question answering and class-based localization tasks, where it highlights visual evidence aligned with key diagnostic phrases, supporting clinicians in interpreting various types of textual inputs, including free-text reports, visual question answering queries, and class labels.

  • 12 authors
·
Apr 10, 2024

VehicleNet: Learning Robust Visual Representation for Vehicle Re-identification

One fundamental challenge of vehicle re-identification (re-id) is to learn robust and discriminative visual representation, given the significant intra-class vehicle variations across different camera views. As the existing vehicle datasets are limited in terms of training images and viewpoints, we propose to build a unique large-scale vehicle dataset (called VehicleNet) by harnessing four public vehicle datasets, and design a simple yet effective two-stage progressive approach to learning more robust visual representation from VehicleNet. The first stage of our approach is to learn the generic representation for all domains (i.e., source vehicle datasets) by training with the conventional classification loss. This stage relaxes the full alignment between the training and testing domains, as it is agnostic to the target vehicle domain. The second stage is to fine-tune the trained model purely based on the target vehicle set, by minimizing the distribution discrepancy between our VehicleNet and any target domain. We discuss our proposed multi-source dataset VehicleNet and evaluate the effectiveness of the two-stage progressive representation learning through extensive experiments. We achieve the state-of-art accuracy of 86.07% mAP on the private test set of AICity Challenge, and competitive results on two other public vehicle re-id datasets, i.e., VeRi-776 and VehicleID. We hope this new VehicleNet dataset and the learned robust representations can pave the way for vehicle re-id in the real-world environments.

  • 5 authors
·
Apr 28, 2022

Noisy-Correspondence Learning for Text-to-Image Person Re-identification

Text-to-image person re-identification (TIReID) is a compelling topic in the cross-modal community, which aims to retrieve the target person based on a textual query. Although numerous TIReID methods have been proposed and achieved promising performance, they implicitly assume the training image-text pairs are correctly aligned, which is not always the case in real-world scenarios. In practice, the image-text pairs inevitably exist under-correlated or even false-correlated, a.k.a noisy correspondence (NC), due to the low quality of the images and annotation errors. To address this problem, we propose a novel Robust Dual Embedding method (RDE) that can learn robust visual-semantic associations even with NC. Specifically, RDE consists of two main components: 1) A Confident Consensus Division (CCD) module that leverages the dual-grained decisions of dual embedding modules to obtain a consensus set of clean training data, which enables the model to learn correct and reliable visual-semantic associations. 2) A Triplet-Alignment Loss (TAL) relaxes the conventional triplet-ranking loss with hardest negatives, which tends to rapidly overfit NC, to a log-exponential upper bound over all negatives, thus preventing the model from overemphasizing false image-text pairs. We conduct extensive experiments on three public benchmarks, namely CUHK-PEDES, ICFG-PEDES, and RSTPReID, to evaluate the performance and robustness of our RDE. Our method achieves state-of-the-art results both with and without synthetic noisy correspondences on all three datasets.

  • 6 authors
·
Aug 19, 2023

Learning Embeddings with Centroid Triplet Loss for Object Identification in Robotic Grasping

Foundation models are a strong trend in deep learning and computer vision. These models serve as a base for applications as they require minor or no further fine-tuning by developers to integrate into their applications. Foundation models for zero-shot object segmentation such as Segment Anything (SAM) output segmentation masks from images without any further object information. When they are followed in a pipeline by an object identification model, they can perform object detection without training. Here, we focus on training such an object identification model. A crucial practical aspect for an object identification model is to be flexible in input size. As object identification is an image retrieval problem, a suitable method should handle multi-query multi-gallery situations without constraining the number of input images (e.g. by having fixed-size aggregation layers). The key solution to train such a model is the centroid triplet loss (CTL), which aggregates image features to their centroids. CTL yields high accuracy, avoids misleading training signals and keeps the model input size flexible. In our experiments, we establish a new state of the art on the ArmBench object identification task, which shows general applicability of our model. We furthermore demonstrate an integrated unseen object detection pipeline on the challenging HOPE dataset, which requires fine-grained detection. There, our pipeline matches and surpasses related methods which have been trained on dataset-specific data.

  • 5 authors
·
Apr 9, 2024

Energy Injection Identification enabled Disaggregation with Deep Multi-Task Learning

Non-Intrusive Load Monitoring (NILM) offers a cost-effective method to obtain fine-grained appliance-level energy consumption in smart homes and building applications. However, the increasing adoption of behind-the-meter (BTM) energy sources such as solar panels and battery storage poses new challenges for conventional NILM methods that rely solely on at-the-meter data. The energy injected from the BTM sources can obscure the power signatures of individual appliances, leading to a significant decrease in NILM performance. To address this challenge, we present DualNILM, a deep multi-task learning framework designed for the dual tasks of appliance state recognition and injected energy identification. Using a Transformer-based architecture that integrates sequence-to-point and sequence-to-sequence strategies, DualNILM effectively captures multiscale temporal dependencies in the aggregate power consumption patterns, allowing for accurate appliance state recognition and energy injection identification. Extensive evaluation on self-collected and synthesized datasets demonstrates that DualNILM maintains an excellent performance for dual tasks in NILM, much outperforming conventional methods. Our work underscores the framework's potential for robust energy disaggregation in modern energy systems with renewable penetration. Synthetic photovoltaic augmented datasets with realistic injection simulation methodology are open-sourced at https://github.com/MathAdventurer/PV-Augmented-NILM-Datasets.

  • 6 authors
·
Aug 20, 2025

CausalReasoningBenchmark: A Real-World Benchmark for Disentangled Evaluation of Causal Identification and Estimation

Many benchmarks for automated causal inference evaluate a system's performance based on a single numerical output, such as an Average Treatment Effect (ATE). This approach conflates two distinct steps in causal analysis: identification-formulating a valid research design under stated assumptions-and estimation-implementing that design numerically on finite data. We introduce CausalReasoningBenchmark, a benchmark of 173 queries across 138 real-world datasets, curated from 85 peer-reviewed research papers and four widely-used causal-inference textbooks. For each query a system must produce (i) a structured identification specification that names the strategy, the treatment, outcome, and control variables, and all design-specific elements, and (ii) a point estimate with a standard error. By scoring these two components separately, our benchmark enables granular diagnosis: it distinguishes failures in causal reasoning from errors in numerical execution. Baseline results with a state-of-the-art LLM show that, while the model correctly identifies the high-level strategy in 84 % of cases, full identification-specification correctness drops to only 30 %, revealing that the bottleneck lies in the nuanced details of research design rather than in computation. CausalReasoningBenchmark is publicly available on Hugging Face and is designed to foster the development of more robust automated causal-inference systems.

  • 3 authors
·
Feb 24

Pixel-wise Graph Attention Networks for Person Re-identification

Graph convolutional networks (GCN) is widely used to handle irregular data since it updates node features by using the structure information of graph. With the help of iterated GCN, high-order information can be obtained to further enhance the representation of nodes. However, how to apply GCN to structured data (such as pictures) has not been deeply studied. In this paper, we explore the application of graph attention networks (GAT) in image feature extraction. First of all, we propose a novel graph generation algorithm to convert images into graphs through matrix transformation. It is one magnitude faster than the algorithm based on K Nearest Neighbors (KNN). Then, GAT is used on the generated graph to update the node features. Thus, a more robust representation is obtained. These two steps are combined into a module called pixel-wise graph attention module (PGA). Since the graph obtained by our graph generation algorithm can still be transformed into a picture after processing, PGA can be well combined with CNN. Based on these two modules, we consulted the ResNet and design a pixel-wise graph attention network (PGANet). The PGANet is applied to the task of person re-identification in the datasets Market1501, DukeMTMC-reID and Occluded-DukeMTMC (outperforms state-of-the-art by 0.8\%, 1.1\% and 11\% respectively, in mAP scores). Experiment results show that it achieves the state-of-the-art performance. https://github.com/wenyu1009/PGANet{The code is available here}.

  • 5 authors
·
Jul 18, 2023

Strength in Diversity: Multi-Branch Representation Learning for Vehicle Re-Identification

This paper presents an efficient and lightweight multi-branch deep architecture to improve vehicle re-identification (V-ReID). While most V-ReID work uses a combination of complex multi-branch architectures to extract robust and diversified embeddings towards re-identification, we advocate that simple and lightweight architectures can be designed to fulfill the Re-ID task without compromising performance. We propose a combination of Grouped-convolution and Loss-Branch-Split strategies to design a multi-branch architecture that improve feature diversity and feature discriminability. We combine a ResNet50 global branch architecture with a BotNet self-attention branch architecture, both designed within a Loss-Branch-Split (LBS) strategy. We argue that specialized loss-branch-splitting helps to improve re-identification tasks by generating specialized re-identification features. A lightweight solution using grouped convolution is also proposed to mimic the learning of loss-splitting into multiple embeddings while significantly reducing the model size. In addition, we designed an improved solution to leverage additional metadata, such as camera ID and pose information, that uses 97% less parameters, further improving re-identification performance. In comparison to state-of-the-art (SoTA) methods, our approach outperforms competing solutions in Veri-776 by achieving 85.6% mAP and 97.7% CMC1 and obtains competitive results in Veri-Wild with 88.1% mAP and 96.3% CMC1. Overall, our work provides important insights into improving vehicle re-identification and presents a strong basis for other retrieval tasks. Our code is available at the https://github.com/videturfortuna/vehicle_reid_itsc2023.

  • 3 authors
·
Oct 1, 2023

VDiff-Bench: A Challenging Benchmark for Fine-Grained Image Difference Identification

Multimodal Large Language Models (MLLMs) perform strongly on general visual understanding tasks such as visual question answering, yet they often struggle with a basic comparative skill: identifying what has changed between two similar images. We introduce VDiff-Bench, a challenging multiple-choice benchmark for fine-grained Image Difference Identification. VDiff-Bench contains 1,756 four-way questions over image pairs and covers 10 change categories: position, motion, regional image color, overall image color, appearance/disappearance, noise/resolution, texture, substitution/size, OCR/text, and illumination. Each question corresponds to two image inputs with 4 choices: the true difference, two hard negative descriptions, and a "no difference" distractor. To make the task challenging, we specifically curate ground-truth-conditioned negatives that require models to distinguish the actual change from nearby semantic alternatives. Experiments with 11 state-of-the-art open- and closed-source MLLMs show that fine-grained visual comparison remains brittle: models exhibit uneven performance across sources and change categories, with persistent failures on subtle low-level changes like noises and textures. For instance, three 7-8B-scale open-source MLLMs score 52.5-70.6% on semantic changes but only 8.7-33.3% on low-level changes like noise and texture, falsely assuming no changes between two image inputs. Surprisingly, despite strong performance of other closed-source commercial models, Grok 4.3 demonstrate remarkable performance drop on identifying noise and texture differences between images, falling significantly behind large open-source models like Kimi K2.5 and K3. Overall, VDiff-Bench provides a targeted diagnostic for evaluating comparative visual understanding in MLLMs, exposing failures that are not captured by standard single-image vision-language tasks.

DomainMix: Learning Generalizable Person Re-Identification Without Human Annotations

Existing person re-identification models often have low generalizability, which is mostly due to limited availability of large-scale labeled data in training. However, labeling large-scale training data is very expensive and time-consuming, while large-scale synthetic dataset shows promising value in learning generalizable person re-identification models. Therefore, in this paper a novel and practical person re-identification task is proposed,i.e. how to use labeled synthetic dataset and unlabeled real-world dataset to train a universal model. In this way, human annotations are no longer required, and it is scalable to large and diverse real-world datasets. To address the task, we introduce a framework with high generalizability, namely DomainMix. Specifically, the proposed method firstly clusters the unlabeled real-world images and selects the reliable clusters. During training, to address the large domain gap between two domains, a domain-invariant feature learning method is proposed, which introduces a new loss,i.e. domain balance loss, to conduct an adversarial learning between domain-invariant feature learning and domain discrimination, and meanwhile learns a discriminative feature for person re-identification. This way, the domain gap between synthetic and real-world data is much reduced, and the learned feature is generalizable thanks to the large-scale and diverse training data. Experimental results show that the proposed annotation-free method is more or less comparable to the counterpart trained with full human annotations, which is quite promising. In addition, it achieves the current state of the art on several person re-identification datasets under direct cross-dataset evaluation.

  • 5 authors
·
Nov 24, 2020

Exploiting the Brain's Network Structure for Automatic Identification of ADHD Subjects

Attention Deficit Hyperactive Disorder (ADHD) is a common behavioral problem affecting children. In this work, we investigate the automatic classification of ADHD subjects using the resting state Functional Magnetic Resonance Imaging (fMRI) sequences of the brain. We show that the brain can be modeled as a functional network, and certain properties of the networks differ in ADHD subjects from control subjects. We compute the pairwise correlation of brain voxels' activity over the time frame of the experimental protocol which helps to model the function of a brain as a network. Different network features are computed for each of the voxels constructing the network. The concatenation of the network features of all the voxels in a brain serves as the feature vector. Feature vectors from a set of subjects are then used to train a PCA-LDA (principal component analysis-linear discriminant analysis) based classifier. We hypothesized that ADHD-related differences lie in some specific regions of the brain and using features only from those regions is sufficient to discriminate ADHD and control subjects. We propose a method to create a brain mask that includes the useful regions only and demonstrate that using the feature from the masked regions improves classification accuracy on the test data set. We train our classifier with 776 subjects and test on 171 subjects provided by The Neuro Bureau for the ADHD-200 challenge. We demonstrate the utility of graph-motif features, specifically the maps that represent the frequency of participation of voxels in network cycles of length 3. The best classification performance (69.59%) is achieved using 3-cycle map features with masking. Our proposed approach holds promise in being able to diagnose and understand the disorder.

  • 3 authors
·
Jun 15, 2023

Attentive WaveBlock: Complementarity-enhanced Mutual Networks for Unsupervised Domain Adaptation in Person Re-identification and Beyond

Unsupervised domain adaptation (UDA) for person re-identification is challenging because of the huge gap between the source and target domain. A typical self-training method is to use pseudo-labels generated by clustering algorithms to iteratively optimize the model on the target domain. However, a drawback to this is that noisy pseudo-labels generally cause trouble in learning. To address this problem, a mutual learning method by dual networks has been developed to produce reliable soft labels. However, as the two neural networks gradually converge, their complementarity is weakened and they likely become biased towards the same kind of noise. This paper proposes a novel light-weight module, the Attentive WaveBlock (AWB), which can be integrated into the dual networks of mutual learning to enhance the complementarity and further depress noise in the pseudo-labels. Specifically, we first introduce a parameter-free module, the WaveBlock, which creates a difference between features learned by two networks by waving blocks of feature maps differently. Then, an attention mechanism is leveraged to enlarge the difference created and discover more complementary features. Furthermore, two kinds of combination strategies, i.e. pre-attention and post-attention, are explored. Experiments demonstrate that the proposed method achieves state-of-the-art performance with significant improvements on multiple UDA person re-identification tasks. We also prove the generality of the proposed method by applying it to vehicle re-identification and image classification tasks. Our codes and models are available at https://github.com/WangWenhao0716/Attentive-WaveBlock.

  • 4 authors
·
Jun 11, 2020

Cross-video Identity Correlating for Person Re-identification Pre-training

Recent researches have proven that pre-training on large-scale person images extracted from internet videos is an effective way in learning better representations for person re-identification. However, these researches are mostly confined to pre-training at the instance-level or single-video tracklet-level. They ignore the identity-invariance in images of the same person across different videos, which is a key focus in person re-identification. To address this issue, we propose a Cross-video Identity-cOrrelating pre-traiNing (CION) framework. Defining a noise concept that comprehensively considers both intra-identity consistency and inter-identity discrimination, CION seeks the identity correlation from cross-video images by modeling it as a progressive multi-level denoising problem. Furthermore, an identity-guided self-distillation loss is proposed to implement better large-scale pre-training by mining the identity-invariance within person images. We conduct extensive experiments to verify the superiority of our CION in terms of efficiency and performance. CION achieves significantly leading performance with even fewer training samples. For example, compared with the previous state-of-the-art~ISR, CION with the same ResNet50-IBN achieves higher mAP of 93.3\% and 74.3\% on Market1501 and MSMT17, while only utilizing 8\% training samples. Finally, with CION demonstrating superior model-agnostic ability, we contribute a model zoo named ReIDZoo to meet diverse research and application needs in this field. It contains a series of CION pre-trained models with spanning structures and parameters, totaling 32 models with 10 different structures, including GhostNet, ConvNext, RepViT, FastViT and so on. The code and models will be made publicly available at https://github.com/Zplusdragon/CION_ReIDZoo.

  • 8 authors
·
Sep 27, 2024

Dual Cross-Attention Learning for Fine-Grained Visual Categorization and Object Re-Identification

Recently, self-attention mechanisms have shown impressive performance in various NLP and CV tasks, which can help capture sequential characteristics and derive global information. In this work, we explore how to extend self-attention modules to better learn subtle feature embeddings for recognizing fine-grained objects, e.g., different bird species or person identities. To this end, we propose a dual cross-attention learning (DCAL) algorithm to coordinate with self-attention learning. First, we propose global-local cross-attention (GLCA) to enhance the interactions between global images and local high-response regions, which can help reinforce the spatial-wise discriminative clues for recognition. Second, we propose pair-wise cross-attention (PWCA) to establish the interactions between image pairs. PWCA can regularize the attention learning of an image by treating another image as distractor and will be removed during inference. We observe that DCAL can reduce misleading attentions and diffuse the attention response to discover more complementary parts for recognition. We conduct extensive evaluations on fine-grained visual categorization and object re-identification. Experiments demonstrate that DCAL performs on par with state-of-the-art methods and consistently improves multiple self-attention baselines, e.g., surpassing DeiT-Tiny and ViT-Base by 2.8% and 2.4% mAP on MSMT17, respectively.

  • 6 authors
·
May 4, 2022

Active Self-Paced Learning for Cost-Effective and Progressive Face Identification

This paper aims to develop a novel cost-effective framework for face identification, which progressively maintains a batch of classifiers with the increasing face images of different individuals. By naturally combining two recently rising techniques: active learning (AL) and self-paced learning (SPL), our framework is capable of automatically annotating new instances and incorporating them into training under weak expert re-certification. We first initialize the classifier using a few annotated samples for each individual, and extract image features using the convolutional neural nets. Then, a number of candidates are selected from the unannotated samples for classifier updating, in which we apply the current classifiers ranking the samples by the prediction confidence. In particular, our approach utilizes the high-confidence and low-confidence samples in the self-paced and the active user-query way, respectively. The neural nets are later fine-tuned based on the updated classifiers. Such heuristic implementation is formulated as solving a concise active SPL optimization problem, which also advances the SPL development by supplementing a rational dynamic curriculum constraint. The new model finely accords with the "instructor-student-collaborative" learning mode in human education. The advantages of this proposed framework are two-folds: i) The required number of annotated samples is significantly decreased while the comparable performance is guaranteed. A dramatic reduction of user effort is also achieved over other state-of-the-art active learning techniques. ii) The mixture of SPL and AL effectively improves not only the classifier accuracy compared to existing AL/SPL methods but also the robustness against noisy data. We evaluate our framework on two challenging datasets, and demonstrate very promising results. (http://hcp.sysu.edu.cn/projects/aspl/)

  • 5 authors
·
Jan 12, 2017

From Poses to Identity: Training-Free Person Re-Identification via Feature Centralization

Person re-identification (ReID) aims to extract accurate identity representation features. However, during feature extraction, individual samples are inevitably affected by noise (background, occlusions, and model limitations). Considering that features from the same identity follow a normal distribution around identity centers after training, we propose a Training-Free Feature Centralization ReID framework (Pose2ID) by aggregating the same identity features to reduce individual noise and enhance the stability of identity representation, which preserves the feature's original distribution for following strategies such as re-ranking. Specifically, to obtain samples of the same identity, we introduce two components:Identity-Guided Pedestrian Generation: by leveraging identity features to guide the generation process, we obtain high-quality images with diverse poses, ensuring identity consistency even in complex scenarios such as infrared, and occlusion.Neighbor Feature Centralization: it explores each sample's potential positive samples from its neighborhood. Experiments demonstrate that our generative model exhibits strong generalization capabilities and maintains high identity consistency. With the Feature Centralization framework, we achieve impressive performance even with an ImageNet pre-trained model without ReID training, reaching mAP/Rank-1 of 52.81/78.92 on Market1501. Moreover, our method sets new state-of-the-art results across standard, cross-modality, and occluded ReID tasks, showcasing strong adaptability.

  • 5 authors
·
Mar 2, 2025

RFUAV: A Benchmark Dataset for Unmanned Aerial Vehicle Detection and Identification

In this paper, we propose RFUAV as a new benchmark dataset for radio-frequency based (RF-based) unmanned aerial vehicle (UAV) identification and address the following challenges: Firstly, many existing datasets feature a restricted variety of drone types and insufficient volumes of raw data, which fail to meet the demands of practical applications. Secondly, existing datasets often lack raw data covering a broad range of signal-to-noise ratios (SNR), or do not provide tools for transforming raw data to different SNR levels. This limitation undermines the validity of model training and evaluation. Lastly, many existing datasets do not offer open-access evaluation tools, leading to a lack of unified evaluation standards in current research within this field. RFUAV comprises approximately 1.3 TB of raw frequency data collected from 37 distinct UAVs using the Universal Software Radio Peripheral (USRP) device in real-world environments. Through in-depth analysis of the RF data in RFUAV, we define a drone feature sequence called RF drone fingerprint, which aids in distinguishing drone signals. In addition to the dataset, RFUAV provides a baseline preprocessing method and model evaluation tools. Rigorous experiments demonstrate that these preprocessing methods achieve state-of-the-art (SOTA) performance using the provided evaluation tools. The RFUAV dataset and baseline implementation are publicly available at https://github.com/kitoweeknd/RFUAV/.

  • 7 authors
·
Mar 11, 2025

TransReID: Transformer-based Object Re-Identification

Extracting robust feature representation is one of the key challenges in object re-identification (ReID). Although convolution neural network (CNN)-based methods have achieved great success, they only process one local neighborhood at a time and suffer from information loss on details caused by convolution and downsampling operators (e.g. pooling and strided convolution). To overcome these limitations, we propose a pure transformer-based object ReID framework named TransReID. Specifically, we first encode an image as a sequence of patches and build a transformer-based strong baseline with a few critical improvements, which achieves competitive results on several ReID benchmarks with CNN-based methods. To further enhance the robust feature learning in the context of transformers, two novel modules are carefully designed. (i) The jigsaw patch module (JPM) is proposed to rearrange the patch embeddings via shift and patch shuffle operations which generates robust features with improved discrimination ability and more diversified coverage. (ii) The side information embeddings (SIE) is introduced to mitigate feature bias towards camera/view variations by plugging in learnable embeddings to incorporate these non-visual clues. To the best of our knowledge, this is the first work to adopt a pure transformer for ReID research. Experimental results of TransReID are superior promising, which achieve state-of-the-art performance on both person and vehicle ReID benchmarks.

  • 6 authors
·
Feb 8, 2021

Learning to Purification for Unsupervised Person Re-identification

Unsupervised person re-identification is a challenging and promising task in computer vision. Nowadays unsupervised person re-identification methods have achieved great progress by training with pseudo labels. However, how to purify feature and label noise is less explicitly studied in the unsupervised manner. To purify the feature, we take into account two types of additional features from different local views to enrich the feature representation. The proposed multi-view features are carefully integrated into our cluster contrast learning to leverage more discriminative cues that the global feature easily ignored and biased. To purify the label noise, we propose to take advantage of the knowledge of teacher model in an offline scheme. Specifically, we first train a teacher model from noisy pseudo labels, and then use the teacher model to guide the learning of our student model. In our setting, the student model could converge fast with the supervision of the teacher model thus reduce the interference of noisy labels as the teacher model greatly suffered. After carefully handling the noise and bias in the feature learning, our purification modules are proven to be very effective for unsupervised person re-identification. Extensive experiments on three popular person re-identification datasets demonstrate the superiority of our method. Especially, our approach achieves a state-of-the-art accuracy 85.8\% @mAP and 94.5\% @Rank-1 on the challenging Market-1501 benchmark with ResNet-50 under the fully unsupervised setting. The code will be released.

  • 5 authors
·
Apr 21, 2022

Deep Learning for Plant Identification and Disease Classification from Leaf Images: Multi-prediction Approaches

Deep learning plays an important role in modern agriculture, especially in plant pathology using leaf images where convolutional neural networks (CNN) are attracting a lot of attention. While numerous reviews have explored the applications of deep learning within this research domain, there remains a notable absence of an empirical study to offer insightful comparisons due to the employment of varied datasets in the evaluation. Furthermore, a majority of these approaches tend to address the problem as a singular prediction task, overlooking the multifaceted nature of predicting various aspects of plant species and disease types. Lastly, there is an evident need for a more profound consideration of the semantic relationships that underlie plant species and disease types. In this paper, we start our study by surveying current deep learning approaches for plant identification and disease classification. We categorise the approaches into multi-model, multi-label, multi-output, and multi-task, in which different backbone CNNs can be employed. Furthermore, based on the survey of existing approaches in plant pathology and the study of available approaches in machine learning, we propose a new model named Generalised Stacking Multi-output CNN (GSMo-CNN). To investigate the effectiveness of different backbone CNNs and learning approaches, we conduct an intensive experiment on three benchmark datasets Plant Village, Plant Leaves, and PlantDoc. The experimental results demonstrate that InceptionV3 can be a good choice for a backbone CNN as its performance is better than AlexNet, VGG16, ResNet101, EfficientNet, MobileNet, and a custom CNN developed by us. Interestingly, empirical results support the hypothesis that using a single model can be comparable or better than using two models. Finally, we show that the proposed GSMo-CNN achieves state-of-the-art performance on three benchmark datasets.

  • 4 authors
·
Oct 24, 2023

Enhancing Neural Audio Fingerprint Robustness to Audio Degradation for Music Identification

Audio fingerprinting (AFP) allows the identification of unknown audio content by extracting compact representations, termed audio fingerprints, that are designed to remain robust against common audio degradations. Neural AFP methods often employ metric learning, where representation quality is influenced by the nature of the supervision and the utilized loss function. However, recent work unrealistically simulates real-life audio degradation during training, resulting in sub-optimal supervision. Additionally, although several modern metric learning approaches have been proposed, current neural AFP methods continue to rely on the NT-Xent loss without exploring the recent advances or classical alternatives. In this work, we propose a series of best practices to enhance the self-supervision by leveraging musical signal properties and realistic room acoustics. We then present the first systematic evaluation of various metric learning approaches in the context of AFP, demonstrating that a self-supervised adaptation of the triplet loss yields superior performance. Our results also reveal that training with multiple positive samples per anchor has critically different effects across loss functions. Our approach is built upon these insights and achieves state-of-the-art performance on both a large, synthetically degraded dataset and a real-world dataset recorded using microphones in diverse music venues.

  • 7 authors
·
Jun 26, 2025

Discovering Explicit Magnetic Core Loss Equations via Learnable Symbolic Sparse Identification

Explicit magnetic core loss equations with simple expressions and physical interpretability are significant tools in the design of high-frequency power magnetics. Traditional fits to empirical data like the Steinmetz Equation (SE) often struggle with accuracy, whereas modern machine learning approaches improve precision but deviate from physics. To fill this gap, this paper proposes a Learnable Symbolic Sparse Identification (LSSI) framework for data-driven equation discovery. Specifically, LSSI reformulates magnetic core loss equations for sinusoidal drives as a symbolic regression problem derived directly from experimental data. Building upon the SE, an expanded library of candidate functions are introduced and a sparse identification framework is implemented to select the dominant ones. More importantly, crucial parameters like exponents and coefficients of candidate functions are treated as learnable ones, simultaneously achieving equation simplicity and high expressiveness of the underlying fractional power laws. Experimental results demonstrate that LSSI achieves superior accuracy with a state-of-the-art R^2 of 0.9999 and a MAPE of 1.04% through a highly compact explicit equation containing only 4 active terms. Furthermore, it drastically reduces the parameter count from 4417 in neural network methods to 15, showcasing exceptional compactness and efficiency. The LSSI framework thus provides a physically transparent and highly accurate solution suitable for complex modern magnetic characterization and design.

  • 5 authors
·
Jul 31

SHIELD: A Diverse Clinical Note Dataset and Distilled Small Language Models for Enterprise-Scale De-identification

De-identification of clinical text is a prerequisite for the secondary use of electronic health records. Existing public benchmarks such as the i2b2 2006 and 2014 corpora are over a decade old and lack the semantic and demographic diversity of modern clinical narratives. Large Language Models (LLMs) reach state-of-the-art zero-shot extraction, but their use at enterprise scale is limited by computational cost and by hospital data governance that restricts sending Protected Health Information (PHI) to cloud APIs. We introduce SHIELD (Synthetic Human-annotated Identifier-replaced Entries for Learning and De-identification), a diverse clinical note dataset of 1,381 notes with 10,229 gold-standard PHI spans across 9 categories, built with set-cover diversity sampling across demographic and document-type strata and human-in-the-loop adjudication. We evaluate four LLMs (two proprietary, two open-weight) to establish a performance ceiling on SHIELD, then show that a teacher-student distillation framework transfers these capabilities into locally deployable Small Language Models. Our best distilled model reaches micro-averaged span-level precision of 0.89 and recall of 0.88 while running on standard workstation hardware. It trails its cloud teacher on per-category recall (0.90 vs. 0.81 macro-averaged) but remains competitive given its lower cost and on-premise deployability. Cross-dataset evaluation shows that diversity-trained models generalize well on universal structured PHI categories, while institution-specific entities remain hard to transfer in both directions, which suggests pairing broad-coverage models with specialized models for high-volume, semi-structured note types. We publicly release the SHIELD dataset and the distilled DeBERTa v3 model to provide an accurate, cost-effective de-identification pipeline deployable entirely behind institutional firewalls.

  • 4 authors
·
Jun 30

What Does This Acronym Mean? Introducing a New Dataset for Acronym Identification and Disambiguation

Acronyms are the short forms of phrases that facilitate conveying lengthy sentences in documents and serve as one of the mainstays of writing. Due to their importance, identifying acronyms and corresponding phrases (i.e., acronym identification (AI)) and finding the correct meaning of each acronym (i.e., acronym disambiguation (AD)) are crucial for text understanding. Despite the recent progress on this task, there are some limitations in the existing datasets which hinder further improvement. More specifically, limited size of manually annotated AI datasets or noises in the automatically created acronym identification datasets obstruct designing advanced high-performing acronym identification models. Moreover, the existing datasets are mostly limited to the medical domain and ignore other domains. In order to address these two limitations, we first create a manually annotated large AI dataset for scientific domain. This dataset contains 17,506 sentences which is substantially larger than previous scientific AI datasets. Next, we prepare an AD dataset for scientific domain with 62,441 samples which is significantly larger than the previous scientific AD dataset. Our experiments show that the existing state-of-the-art models fall far behind human-level performance on both datasets proposed by this work. In addition, we propose a new deep learning model that utilizes the syntactical structure of the sentence to expand an ambiguous acronym in a sentence. The proposed model outperforms the state-of-the-art models on the new AD dataset, providing a strong baseline for future research on this dataset.

  • 4 authors
·
Oct 27, 2020

Learning Generalisable Omni-Scale Representations for Person Re-Identification

An effective person re-identification (re-ID) model should learn feature representations that are both discriminative, for distinguishing similar-looking people, and generalisable, for deployment across datasets without any adaptation. In this paper, we develop novel CNN architectures to address both challenges. First, we present a re-ID CNN termed omni-scale network (OSNet) to learn features that not only capture different spatial scales but also encapsulate a synergistic combination of multiple scales, namely omni-scale features. The basic building block consists of multiple convolutional streams, each detecting features at a certain scale. For omni-scale feature learning, a unified aggregation gate is introduced to dynamically fuse multi-scale features with channel-wise weights. OSNet is lightweight as its building blocks comprise factorised convolutions. Second, to improve generalisable feature learning, we introduce instance normalisation (IN) layers into OSNet to cope with cross-dataset discrepancies. Further, to determine the optimal placements of these IN layers in the architecture, we formulate an efficient differentiable architecture search algorithm. Extensive experiments show that, in the conventional same-dataset setting, OSNet achieves state-of-the-art performance, despite being much smaller than existing re-ID models. In the more challenging yet practical cross-dataset setting, OSNet beats most recent unsupervised domain adaptation methods without using any target data. Our code and models are released at https://github.com/KaiyangZhou/deep-person-reid.

  • 4 authors
·
Oct 15, 2019

A Little Bit Attention Is All You Need for Person Re-Identification

Person re-identification plays a key role in applications where a mobile robot needs to track its users over a long period of time, even if they are partially unobserved for some time, in order to follow them or be available on demand. In this context, deep-learning based real-time feature extraction on a mobile robot is often performed on special-purpose devices whose computational resources are shared for multiple tasks. Therefore, the inference speed has to be taken into account. In contrast, person re-identification is often improved by architectural changes that come at the cost of significantly slowing down inference. Attention blocks are one such example. We will show that some well-performing attention blocks used in the state of the art are subject to inference costs that are far too high to justify their use for mobile robotic applications. As a consequence, we propose an attention block that only slightly affects the inference speed while keeping up with much deeper networks or more complex attention blocks in terms of re-identification accuracy. We perform extensive neural architecture search to derive rules at which locations this attention block should be integrated into the architecture in order to achieve the best trade-off between speed and accuracy. Finally, we confirm that the best performing configuration on a re-identification benchmark also performs well on an indoor robotic dataset.

  • 4 authors
·
Feb 28, 2023

Keypoint Promptable Re-Identification

Occluded Person Re-Identification (ReID) is a metric learning task that involves matching occluded individuals based on their appearance. While many studies have tackled occlusions caused by objects, multi-person occlusions remain less explored. In this work, we identify and address a critical challenge overlooked by previous occluded ReID methods: the Multi-Person Ambiguity (MPA) arising when multiple individuals are visible in the same bounding box, making it impossible to determine the intended ReID target among the candidates. Inspired by recent work on prompting in vision, we introduce Keypoint Promptable ReID (KPR), a novel formulation of the ReID problem that explicitly complements the input bounding box with a set of semantic keypoints indicating the intended target. Since promptable re-identification is an unexplored paradigm, existing ReID datasets lack the pixel-level annotations necessary for prompting. To bridge this gap and foster further research on this topic, we introduce Occluded-PoseTrack ReID, a novel ReID dataset with keypoints labels, that features strong inter-person occlusions. Furthermore, we release custom keypoint labels for four popular ReID benchmarks. Experiments on person retrieval, but also on pose tracking, demonstrate that our method systematically surpasses previous state-of-the-art approaches on various occluded scenarios. Our code, dataset and annotations are available at https://github.com/VlSomers/keypoint_promptable_reidentification.

  • 3 authors
·
Jul 25, 2024

CLIP-SCGI: Synthesized Caption-Guided Inversion for Person Re-Identification

Person re-identification (ReID) has recently benefited from large pretrained vision-language models such as Contrastive Language-Image Pre-Training (CLIP). However, the absence of concrete descriptions necessitates the use of implicit text embeddings, which demand complicated and inefficient training strategies. To address this issue, we first propose one straightforward solution by leveraging existing image captioning models to generate pseudo captions for person images, and thereby boost person re-identification with large vision language models. Using models like the Large Language and Vision Assistant (LLAVA), we generate high-quality captions based on fixed templates that capture key semantic attributes such as gender, clothing, and age. By augmenting ReID training sets from uni-modality (image) to bi-modality (image and text), we introduce CLIP-SCGI, a simple yet effective framework that leverages synthesized captions to guide the learning of discriminative and robust representations. Built on CLIP, CLIP-SCGI fuses image and text embeddings through two modules to enhance the training process. To address quality issues in generated captions, we introduce a caption-guided inversion module that captures semantic attributes from images by converting relevant visual information into pseudo-word tokens based on the descriptions. This approach helps the model better capture key information and focus on relevant regions. The extracted features are then utilized in a cross-modal fusion module, guiding the model to focus on regions semantically consistent with the caption, thereby facilitating the optimization of the visual encoder to extract discriminative and robust representations. Extensive experiments on four popular ReID benchmarks demonstrate that CLIP-SCGI outperforms the state-of-the-art by a significant margin.

  • 6 authors
·
Oct 12, 2024

Improving the Performance of Radiology Report De-identification with Large-Scale Training and Benchmarking Against Cloud Vendor Methods

Objective: To enhance automated de-identification of radiology reports by scaling transformer-based models through extensive training datasets and benchmarking performance against commercial cloud vendor systems for protected health information (PHI) detection. Materials and Methods: In this retrospective study, we built upon a state-of-the-art, transformer-based, PHI de-identification pipeline by fine-tuning on two large annotated radiology corpora from Stanford University, encompassing chest X-ray, chest CT, abdomen/pelvis CT, and brain MR reports and introducing an additional PHI category (AGE) into the architecture. Model performance was evaluated on test sets from Stanford and the University of Pennsylvania (Penn) for token-level PHI detection. We further assessed (1) the stability of synthetic PHI generation using a "hide-in-plain-sight" method and (2) performance against commercial systems. Precision, recall, and F1 scores were computed across all PHI categories. Results: Our model achieved overall F1 scores of 0.973 on the Penn dataset and 0.996 on the Stanford dataset, outperforming or maintaining the previous state-of-the-art model performance. Synthetic PHI evaluation showed consistent detectability (overall F1: 0.959 [0.958-0.960]) across 50 independently de-identified Penn datasets. Our model outperformed all vendor systems on synthetic Penn reports (overall F1: 0.960 vs. 0.632-0.754). Discussion: Large-scale, multimodal training improved cross-institutional generalization and robustness. Synthetic PHI generation preserved data utility while ensuring privacy. Conclusion: A transformer-based de-identification model trained on diverse radiology datasets outperforms prior academic and commercial systems in PHI detection and establishes a new benchmark for secure clinical text processing.

  • 8 authors
·
Nov 6, 2025

FireRedASR2S: A State-of-the-Art Industrial-Grade All-in-One Automatic Speech Recognition System

We present FireRedASR2S, a state-of-the-art industrial-grade all-in-one automatic speech recognition (ASR) system. It integrates four modules in a unified pipeline: ASR, Voice Activity Detection (VAD), Spoken Language Identification (LID), and Punctuation Prediction (Punc). All modules achieve SOTA performance on the evaluated benchmarks: FireRedASR2: An ASR module with two variants, FireRedASR2-LLM (8B+ parameters) and FireRedASR2-AED (1B+ parameters), supporting speech and singing transcription for Mandarin, Chinese dialects and accents, English, and code-switching. Compared to FireRedASR, FireRedASR2 delivers improved recognition accuracy and broader dialect and accent coverage. FireRedASR2-LLM achieves 2.89% average CER on 4 public Mandarin benchmarks and 11.55% on 19 public Chinese dialects and accents benchmarks, outperforming competitive baselines including Doubao-ASR, Qwen3-ASR, and Fun-ASR. FireRedVAD: An ultra-lightweight module (0.6M parameters) based on the Deep Feedforward Sequential Memory Network (DFSMN), supporting streaming VAD, non-streaming VAD, and multi-label VAD (mVAD). On the FLEURS-VAD-102 benchmark, it achieves 97.57% frame-level F1 and 99.60% AUC-ROC, outperforming Silero-VAD, TEN-VAD, FunASR-VAD, and WebRTC-VAD. FireRedLID: An Encoder-Decoder LID module supporting 100+ languages and 20+ Chinese dialects and accents. On FLEURS (82 languages), it achieves 97.18% utterance-level accuracy, outperforming Whisper and SpeechBrain. FireRedPunc: A BERT-style punctuation prediction module for Chinese and English. On multi-domain benchmarks, it achieves 78.90% average F1, outperforming FunASR-Punc (62.77%). To advance research in speech processing, we release model weights and code at https://github.com/FireRedTeam/FireRedASR2S.

  • 9 authors
·
Mar 11 2

SDF-Net: Structure-Aware Disentangled Feature Learning for Opticall-SAR Ship Re-identification

Cross-modal ship re-identification (ReID) between optical and synthetic aperture radar (SAR) imagery is fundamentally challenged by the severe radiometric discrepancy between passive optical imaging and coherent active radar sensing. While existing approaches primarily rely on statistical distribution alignment or semantic matching, they often overlook a critical physical prior: ships are rigid objects whose geometric structures remain stable across sensing modalities, whereas texture appearance is highly modality-dependent. In this work, we propose SDF-Net, a Structure-Aware Disentangled Feature Learning Network that systematically incorporates geometric consistency into optical--SAR ship ReID. Built upon a ViT backbone, SDF-Net introduces a structure consistency constraint that extracts scale-invariant gradient energy statistics from intermediate layers to robustly anchor representations against radiometric variations. At the terminal stage, SDF-Net disentangles the learned representations into modality-invariant identity features and modality-specific characteristics. These decoupled cues are then integrated through a parameter-free additive residual fusion, effectively enhancing discriminative power. Extensive experiments on the HOSS-ReID dataset demonstrate that SDF-Net consistently outperforms existing state-of-the-art methods. The code and trained models are publicly available at https://github.com/cfrfree/SDF-Net.

  • 8 authors
·
Mar 12 2

When VLMs Meet Image Classification: Test Sets Renovation via Missing Label Identification

Image classification benchmark datasets such as CIFAR, MNIST, and ImageNet serve as critical tools for model evaluation. However, despite the cleaning efforts, these datasets still suffer from pervasive noisy labels and often contain missing labels due to the co-existing image pattern where multiple classes appear in an image sample. This results in misleading model comparisons and unfair evaluations. Existing label cleaning methods focus primarily on noisy labels, but the issue of missing labels remains largely overlooked. Motivated by these challenges, we present a comprehensive framework named REVEAL, integrating state-of-the-art pre-trained vision-language models (e.g., LLaVA, BLIP, Janus, Qwen) with advanced machine/human label curation methods (e.g., Docta, Cleanlab, MTurk), to systematically address both noisy labels and missing label detection in widely-used image classification test sets. REVEAL detects potential noisy labels and omissions, aggregates predictions from various methods, and refines label accuracy through confidence-informed predictions and consensus-based filtering. Additionally, we provide a thorough analysis of state-of-the-art vision-language models and pre-trained image classifiers, highlighting their strengths and limitations within the context of dataset renovation by revealing 10 observations. Our method effectively reveals missing labels from public datasets and provides soft-labeled results with likelihoods. Through human verifications, REVEAL significantly improves the quality of 6 benchmark test sets, highly aligning to human judgments and enabling more accurate and meaningful comparisons in image classification.

  • 7 authors
·
May 21, 2025

DELIGHT: Deep Learning Identification of Galaxy Hosts of Transients using Multi-resolution Images

We present DELIGHT, or Deep Learning Identification of Galaxy Hosts of Transients, a new algorithm designed to automatically and in real-time identify the host galaxies of extragalactic transients. The proposed algorithm receives as input compact, multi-resolution images centered at the position of a transient candidate and outputs two-dimensional offset vectors that connect the transient with the center of its predicted host. The multi-resolution input consists of a set of images with the same number of pixels, but with progressively larger pixel sizes and fields of view. A sample of \nSample galaxies visually identified by the ALeRCE broker team was used to train a convolutional neural network regression model. We show that this method is able to correctly identify both relatively large (10arcsec < r < 60arcsec) and small (r le 10arcsec) apparent size host galaxies using much less information (32 kB) than with a large, single-resolution image (920 kB). The proposed method has fewer catastrophic errors in recovering the position and is more complete and has less contamination (< 0.86%) recovering the cross-matched redshift than other state-of-the-art methods. The more efficient representation provided by multi-resolution input images could allow for the identification of transient host galaxies in real-time, if adopted in alert streams from new generation of large etendue telescopes such as the Vera C. Rubin Observatory.

  • 28 authors
·
Aug 7, 2022

WildMatch: Weakly Supervised Image Matcher Adaptation for Wildlife Re-Identification

Individual animal re-identification from camera-trap imagery is an instance retrieval problem central to non-invasive wildlife monitoring: a query image must retrieve the correct individual from a reference set of known animals. This requires computer vision models to recognize distinctive local patterns in fur, skin, or other visual markings. Current approaches either learn global embeddings as a classification problem, requiring many labeled images per individual while largely ignoring local evidence, or apply off-the-shelf, domain-agnostic image matchers. Although such matchers are pretrained on large and diverse image collections, adapting them to wildlife imagery is challenging because available datasets are small and lack correspondence-level annotations. We study weakly supervised adaptation of a pretrained keypoint matcher using only identity labels, without keypoint-level or geometric correspondence ground truth. We mine informative image pairs with the pretrained matcher, derive weak positive and negative supervision from identity agreement, and contrastively fine-tune the matching network to strengthen correspondences for same-identity pairs and suppress them for different identities. Across open-source wildlife re-identification datasets, our approach improves accuracy over off-the-shelf matchers and a state-of-the-art local--global fusion method. Under an open-world protocol with held-out individuals, it learns a transferable correspondence prior rather than memorizing training identities. To our knowledge, this is the first study of matcher-level, identity-supervised adaptation for animal re-identification. Our method enables data-efficient specialization of image matching models to wildlife domains using identity annotations already available in typical monitoring datasets.

  • 6 authors
·
Oct 4 1

3D-LENS: A 3D Lifting-based Elevated Novel-view Synthesis method for Single-View Aerial-Ground Re-Identification

Aerial-Ground Re-Identification (AG-ReID) is constrained by the viewpoint-domain gap, as drastic viewpoint disparities occlude or distort discriminative features, making cross-viewpoint image retrieval challenging. While existing methods rely on paired cross-view annotations, real-world deployments, such as wilderness search-and-rescue (SAR), often lack target-domain data, requiring retrieval from ground-level references alone. To our knowledge, we are the first to address this challenge by formalizing the Single-View AG-ReID (SV AG-ReID) setting, where models trained on a single real viewpoint must generalize to an unseen viewpoint. We propose 3D Lifting-based Elevated Novel-view Synthesis (3D-LENS), a unified framework combining geometrically-consistent novel view synthesis that leverages large-scale 3D mesh reconstruction, with a robust representation learning scheme to mitigate synthetic-to-real bias. Unlike 2D generative baselines that suffer from geometric inconsistencies or prior 3D methods that are restricted to class-specific templates, our approach ensures view-consistent synthesis across diverse categories without predefined templates that fail to capture fine-grained details, such as carried objects. Extensive experiments demonstrate that our method achieves state-of-the-art performance on SV AG-ReID scenarios. Code and data will be released at https://github.com/TurtleSmoke/3D-LENS.

  • 4 authors
·
Oct 11

3D-VITAL: Visibility-aware Identity Training from Artificial Liftings of 3D Reconstruction model for Cross-View Object Re-Identification

We address the Cross-View Object Re-Identification (ReID) task, aiming to match identities across drastically different viewpoints. We focus on Single-View Aerial-Ground ReID (SV AG-ReID), where models train on one viewpoint and must generalize to another at inference. To bridge this viewpoint gap, related work employs generative models to synthesize novel views from source images as additional training data. We leverage recent advances in large-scale single-view 3D mesh reconstruction to lift source images into textured meshes and to render them from new viewpoints. However, this pipeline produces unreliable data in two distinct ways. First, the reconstruction may fail and produce geometrically incorrect meshes, resulting in severe corruption in rendered novel views. Second, even when the geometry is correct, the rendered novel views contain hallucinated textures in regions not visible in the source image. The reconstructed mesh carries a per-pixel partition between regions visible from the source view and regions that the reconstruction model had to hallucinate, available as a deterministic byproduct of rendering. We introduce this per-pixel visibility map and exploit it in a two-stage design. Cross-View Consistency Filtering (CVCF) discards geometrically incorrect meshes by ensuring multi-view consistency between source and novel views over visible patches. Visibility-Aware Attention Supervision (VAAS) leverages the visibility map to guide the model's attention toward reliable regions of the rendered view during training. Combined, these two components enable our method, 3D-VITAL, to better leverage the synthetic signal from single-view 3D mesh reconstruction. 3D-VITAL sets a new state-of-the-art on three SV AG-ReID benchmarks. Code and data will be released at https://github.com/TurtleSmoke/3D-VITAL.

  • 4 authors
·
Oct 11

Identity-Seeking Self-Supervised Representation Learning for Generalizable Person Re-identification

This paper aims to learn a domain-generalizable (DG) person re-identification (ReID) representation from large-scale videos without any annotation. Prior DG ReID methods employ limited labeled data for training due to the high cost of annotation, which restricts further advances. To overcome the barriers of data and annotation, we propose to utilize large-scale unsupervised data for training. The key issue lies in how to mine identity information. To this end, we propose an Identity-seeking Self-supervised Representation learning (ISR) method. ISR constructs positive pairs from inter-frame images by modeling the instance association as a maximum-weight bipartite matching problem. A reliability-guided contrastive loss is further presented to suppress the adverse impact of noisy positive pairs, ensuring that reliable positive pairs dominate the learning process. The training cost of ISR scales approximately linearly with the data size, making it feasible to utilize large-scale data for training. The learned representation exhibits superior generalization ability. Without human annotation and fine-tuning, ISR achieves 87.0\% Rank-1 on Market-1501 and 56.4\% Rank-1 on MSMT17, outperforming the best supervised domain-generalizable method by 5.0\% and 19.5\%, respectively. In the pre-trainingrightarrowfine-tuning scenario, ISR achieves state-of-the-art performance, with 88.4\% Rank-1 on MSMT17. The code is at https://github.com/dcp15/ISR_ICCV2023_Oral.

  • 4 authors
·
Aug 17, 2023

Bringing Back the Context: Camera Trap Species Identification as Link Prediction on Multimodal Knowledge Graphs

Camera traps are valuable tools in animal ecology for biodiversity monitoring and conservation. However, challenges like poor generalization to deployment at new unseen locations limit their practical application. Images are naturally associated with heterogeneous forms of context possibly in different modalities. In this work, we leverage the structured context associated with the camera trap images to improve out-of-distribution generalization for the task of species identification in camera traps. For example, a photo of a wild animal may be associated with information about where and when it was taken, as well as structured biology knowledge about the animal species. While typically overlooked by existing work, bringing back such context offers several potential benefits for better image understanding, such as addressing data scarcity and enhancing generalization. However, effectively integrating such heterogeneous context into the visual domain is a challenging problem. To address this, we propose a novel framework that reformulates species classification as link prediction in a multimodal knowledge graph (KG). This framework seamlessly integrates various forms of multimodal context for visual recognition. We apply this framework for out-of-distribution species classification on the iWildCam2020-WILDS and Snapshot Mountain Zebra datasets and achieve competitive performance with state-of-the-art approaches. Furthermore, our framework successfully incorporates biological taxonomy for improved generalization and enhances sample efficiency for recognizing under-represented species.

  • 10 authors
·
Dec 31, 2023

Sparse Autoencoders Enable Scalable and Reliable Circuit Identification in Language Models

This paper introduces an efficient and robust method for discovering interpretable circuits in large language models using discrete sparse autoencoders. Our approach addresses key limitations of existing techniques, namely computational complexity and sensitivity to hyperparameters. We propose training sparse autoencoders on carefully designed positive and negative examples, where the model can only correctly predict the next token for the positive examples. We hypothesise that learned representations of attention head outputs will signal when a head is engaged in specific computations. By discretising the learned representations into integer codes and measuring the overlap between codes unique to positive examples for each head, we enable direct identification of attention heads involved in circuits without the need for expensive ablations or architectural modifications. On three well-studied tasks - indirect object identification, greater-than comparisons, and docstring completion - the proposed method achieves higher precision and recall in recovering ground-truth circuits compared to state-of-the-art baselines, while reducing runtime from hours to seconds. Notably, we require only 5-10 text examples for each task to learn robust representations. Our findings highlight the promise of discrete sparse autoencoders for scalable and efficient mechanistic interpretability, offering a new direction for analysing the inner workings of large language models.

  • 2 authors
·
May 21, 2024

Unity is Strength: Unifying Convolutional and Transformeral Features for Better Person Re-Identification

Person Re-identification (ReID) aims to retrieve the specific person across non-overlapping cameras, which greatly helps intelligent transportation systems. As we all know, Convolutional Neural Networks (CNNs) and Transformers have the unique strengths to extract local and global features, respectively. Considering this fact, we focus on the mutual fusion between them to learn more comprehensive representations for persons. In particular, we utilize the complementary integration of deep features from different model structures. We propose a novel fusion framework called FusionReID to unify the strengths of CNNs and Transformers for image-based person ReID. More specifically, we first deploy a Dual-branch Feature Extraction (DFE) to extract features through CNNs and Transformers from a single image. Moreover, we design a novel Dual-attention Mutual Fusion (DMF) to achieve sufficient feature fusions. The DMF comprises Local Refinement Units (LRU) and Heterogenous Transmission Modules (HTM). LRU utilizes depth-separable convolutions to align deep features in channel dimensions and spatial sizes. HTM consists of a Shared Encoding Unit (SEU) and two Mutual Fusion Units (MFU). Through the continuous stacking of HTM, deep features after LRU are repeatedly utilized to generate more discriminative features. Extensive experiments on three public ReID benchmarks demonstrate that our method can attain superior performances than most state-of-the-arts. The source code is available at https://github.com/924973292/FusionReID.

  • 5 authors
·
Dec 22, 2024

A general language model for peptide identification

Advances in peptide identification are revolutionizing our ability to decipher protein functions and accelerate therapeutic discovery. We present PDeepPP, a deep learning framework that integrates pretrained protein language models with parallel transformer-CNN architectures, achieving state-of-the-art performance in peptide characterization tasks. The model's hybrid architecture demonstrates unique capabilities in capturing both local sequence motifs and global structural features, as evidenced by 29% improved cluster separation in UMAP visualizations compared to conventional approaches. Evaluated across 33 biological recognition tasks - including post-translational modification site prediction and bioactive peptide identification - PDeepPP outperformed existing methods in 25 tasks with average AUC improvements of 4.2%. Notably, it achieved 0.9726 accuracy with PR AUC 0.9977 in antimicrobial peptide detection while reducing false negatives by 37.5% in antimalarial recognition scenarios. This framework enables accurate large-scale peptide analysis, achieving 218* acceleration over sequence-alignment-based methods while maintaining 99.5% specificity in critical glycosylation site detection.PDeepPP establishes a new paradigm for computational peptide analysis through its synergistic architecture design, enabling rapid yet precise functional annotation that bridges molecular pattern recognition with translational biomedical applications.We have made our implementation, including code, data, and pretrained models, publicly available via GitHub (https://github.com/fondress/PDeepPP) and Hugging Face (https://huggingface.co/fondress/PDeppPP).

  • 8 authors
·
Feb 21, 2025