graphbsi-checkpoints / MANIFEST.md
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Replace the GuacaMol epoch-69 checkpoint with epoch 59, the one the EM-50 row of Tab. 1 used
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GraphBSI checkpoints

Dataset File Source run
Moses moses/last.ckpt u2xo7qql
GuacaMol guacamol/last.ckpt 635bennr (epoch 89)
GuacaMol (50-step Euler row of Tab. 1) guacamol/epoch_59.ckpt 17oqxx3h (epoch 59)
Planar planar/last.ckpt agag753c
SBM sbm/last.ckpt aog3lu3i
Tree tree/last.ckpt n6t28f9t
QM9 (no H) qm9/last.ckpt icd4vay6
QM9 (with H) qm9_with_h/last.ckpt zbtevof0
FlyBrain flybrain/last.ckpt mxjhu6l3
MEL2 mel2/last.ckpt n6yuk51z
Toy sequences toy_sequence/alphabet_{5,10,...,160}.ckpt noise_scale=5.0 sweep

The 50-step Euler GuacaMol row of Tab. 1 was evaluated on run 17oqxx3h while its last checkpoint was at epoch 59; guacamol/epoch_59.ckpt is that file.

All molecular checkpoints were trained with the precision schedule initial_precision=3.0, final_precision=12.0; the synthetic-graph checkpoints use final_precision=20.0 (planar, SBM) and 25.0 (tree). The repository configs are pinned accordingly -- do not evaluate them with the generic ole_scheduler default.

Download with:

python scripts/download_checkpoints.py