canergen commited on
Commit
da94b88
·
verified ·
1 Parent(s): 6193da4

Upload folder using huggingface_hub

Browse files
.gitattributes CHANGED
@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
37
+ OnClass.meta filter=lfs diff=lfs merge=lfs -text
OnClass.data-00000-of-00001 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b860108c4c9185ba5a40c6bd7d71749eb89336dfc1e5ad346380a1f4517378bb
3
+ size 27239224
OnClass.index ADDED
Binary file (222 Bytes). View file
 
OnClass.meta ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e1a48bc86beb0a69e457287b3b3f8e72a765ca46d97300786c4b528945a4124e
3
+ size 229352
OnClass.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2449c57a3bcff6fe81c3a3fe1881c2416f8e87062c37f3ffbb19bca52be12e79
3
+ size 144122868
accuracies.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 3058 | 0.94 | 0.92 | 0.89 | 0.92 | 0.00 | 0.89 | 0.86 | 0.88 | 0.94 |\n| mesenchymal stem cell | 1519 | 0.91 | 0.82 | 0.94 | 0.87 | 0.00 | 0.75 | 0.94 | 0.90 | 0.96 |\n| granulocyte | 1251 | 0.89 | 0.89 | 0.83 | 0.83 | 0.00 | 0.88 | 0.80 | 0.86 | 0.91 |\n| basal cell of epidermis | 1143 | 0.89 | 0.91 | 0.89 | 0.93 | 0.00 | 0.81 | 0.90 | 0.84 | 0.95 |\n| T cell | 1143 | 0.85 | 0.81 | 0.77 | 0.73 | 0.00 | 0.76 | 0.72 | 0.78 | 0.86 |\n| keratinocyte | 1118 | 0.90 | 0.85 | 0.91 | 0.91 | 0.00 | 0.81 | 0.91 | 0.87 | 0.96 |\n| endothelial cell | 1041 | 0.89 | 0.89 | 0.84 | 0.88 | 0.00 | 0.83 | 0.96 | 0.90 | 0.95 |\n| classical monocyte | 799 | 0.83 | 0.54 | 0.77 | 0.70 | 0.00 | 0.64 | 0.85 | 0.86 | 0.93 |\n| granulocytopoietic cell | 771 | 0.78 | 0.80 | 0.81 | 0.80 | 0.00 | 0.82 | 0.77 | 0.81 | 0.86 |\n| macrophage | 728 | 0.69 | 0.64 | 0.68 | 0.69 | 0.00 | 0.55 | 0.69 | 0.73 | 0.81 |\n| bladder urothelial cell | 546 | 0.99 | 1.00 | 0.93 | 0.95 | 0.00 | 0.96 | 1.00 | 0.99 | 1.00 |\n| proerythroblast | 450 | 0.64 | 0.69 | 0.64 | 0.55 | 0.00 | 0.71 | 0.61 | 0.68 | 0.76 |\n| kidney proximal convoluted tubule epithelial cell | 431 | 0.84 | 0.86 | 0.80 | 0.84 | 0.00 | 0.84 | 0.89 | 0.87 | 0.87 |\n| endothelial cell of coronary artery | 329 | 0.77 | 0.84 | 0.70 | 0.80 | 0.00 | 0.69 | 0.96 | 0.88 | 0.93 |\n| epithelial cell of proximal tubule | 307 | 0.78 | 0.84 | 0.70 | 0.75 | 0.00 | 0.81 | 0.89 | 0.84 | 0.84 |\n| bladder cell | 299 | 0.98 | 0.97 | 0.89 | 0.80 | 0.00 | 0.68 | 0.99 | 0.97 | 0.99 |\n| mature NK T cell | 276 | 0.65 | 0.70 | 0.54 | 0.40 | 0.00 | 0.61 | 0.59 | 0.71 | 0.74 |\n| hepatocyte | 300 | 1.00 | 1.00 | 1.00 | 0.98 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| erythroblast | 272 | 0.67 | 0.69 | 0.71 | 0.67 | 0.00 | 0.74 | 0.70 | 0.74 | 0.77 |\n| promonocyte | 285 | 0.81 | 0.78 | 0.83 | 0.78 | 0.00 | 0.78 | 0.88 | 0.89 | 0.92 |\n| stromal cell | 272 | 0.70 | 0.28 | 0.89 | 0.65 | 0.00 | 0.63 | 0.94 | 0.77 | 0.89 |\n| megakaryocyte-erythroid progenitor cell | 268 | 0.63 | 0.67 | 0.53 | 0.70 | 0.00 | 0.67 | 0.68 | 0.65 | 0.72 |\n| type B pancreatic cell | 269 | 0.91 | 0.88 | 0.76 | 0.98 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| Kupffer cell | 263 | 0.97 | 0.51 | 0.76 | 0.77 | 0.00 | 0.84 | 0.98 | 0.96 | 0.97 |\n| natural killer cell | 267 | 0.89 | 0.88 | 0.78 | 0.81 | 0.00 | 0.82 | 0.88 | 0.88 | 0.91 |\n| professional antigen presenting cell | 274 | 0.00 | 0.01 | 0.15 | 0.07 | 0.00 | 0.01 | 0.54 | 0.49 | 0.06 |\n| fibroblast of cardiac tissue | 246 | 0.97 | 0.97 | 0.90 | 0.68 | 0.00 | 0.66 | 0.98 | 0.95 | 0.98 |\n| monocyte | 246 | 0.77 | 0.50 | 0.78 | 0.38 | 0.00 | 0.59 | 0.92 | 0.85 | 0.90 |\n| bronchial smooth muscle cell | 221 | 0.96 | 0.96 | 0.86 | 0.93 | 0.00 | 0.97 | 0.97 | 0.95 | 0.97 |\n| hematopoietic precursor cell | 210 | 0.59 | 0.70 | 0.50 | 0.53 | 0.00 | 0.66 | 0.71 | 0.79 | 0.78 |\n| pancreatic acinar cell | 228 | 0.99 | 0.97 | 0.55 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| skeletal muscle satellite cell | 183 | 0.99 | 0.99 | 0.95 | 0.97 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |\n| DN4 thymocyte | 195 | 0.23 | 0.04 | 0.45 | 0.23 | 0.00 | 0.00 | 0.59 | 0.61 | 0.33 |\n| luminal epithelial cell of mammary gland | 180 | 0.93 | 0.91 | 0.93 | 0.91 | 0.00 | 0.91 | 0.99 | 0.95 | 0.96 |\n| mesenchymal stem cell of adipose tissue | 188 | 0.64 | 0.49 | 0.68 | 0.58 | 0.00 | 0.15 | 0.93 | 0.74 | 0.89 |\n| thymocyte | 175 | 0.97 | 0.50 | 0.89 | 0.95 | 0.00 | 0.94 | 0.98 | 0.93 | 0.98 |\n| myeloid cell | 234 | 0.56 | 0.07 | 0.51 | 0.47 | 0.00 | 0.03 | 0.86 | 0.80 | 0.71 |\n| fibroblast | 179 | 0.61 | 0.11 | 0.67 | 0.64 | 0.00 | 0.56 | 0.69 | 0.70 | 0.79 |\n| immature T cell | 172 | 0.90 | 0.74 | 0.86 | 0.94 | 0.00 | 0.96 | 0.94 | 0.88 | 0.95 |\n| intermediate monocyte | 176 | 0.66 | 0.27 | 0.62 | 0.61 | 0.00 | 0.65 | 0.60 | 0.64 | 0.77 |\n| epidermal cell | 175 | 0.94 | 0.00 | 0.88 | 0.93 | 0.00 | 0.89 | 0.93 | 0.89 | 0.96 |\n| chondrocyte | 160 | 0.87 | 0.00 | 0.86 | 0.84 | 0.00 | 0.88 | 0.88 | 0.89 | 0.89 |\n| plasma cell | 153 | 0.65 | 0.66 | 0.66 | 0.69 | 0.00 | 0.54 | 0.57 | 0.66 | 0.76 |\n| smooth muscle cell | 171 | 0.74 | 0.81 | 0.79 | 0.81 | 0.00 | 0.80 | 0.87 | 0.82 | 0.83 |\n| lymphocyte | 147 | 0.24 | 0.24 | 0.30 | 0.20 | 0.00 | 0.03 | 0.30 | 0.44 | 0.38 |\n| basal cell | 156 | 0.98 | 0.98 | 0.96 | 0.95 | 0.00 | 0.96 | 0.99 | 0.97 | 0.99 |\n| naive T cell | 151 | 0.80 | 0.90 | 0.89 | 0.90 | 0.00 | 0.89 | 0.89 | 0.88 | 0.90 |\n| kidney loop of Henle thick ascending limb epithelial cell | 152 | 0.92 | 0.92 | 0.89 | 0.92 | 0.00 | 0.83 | 0.90 | 0.90 | 0.93 |\n| fibroblast of lung | 146 | 0.95 | 0.92 | 0.96 | 0.94 | 0.00 | 0.96 | 0.99 | 0.97 | 0.97 |\n| leukocyte | 142 | 0.66 | 0.65 | 0.53 | 0.42 | 0.00 | 0.45 | 0.78 | 0.78 | 0.82 |\n| alveolar macrophage | 131 | 0.98 | 0.98 | 0.99 | 0.95 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| lung macrophage | 127 | 0.89 | 0.05 | 0.61 | 0.50 | 0.00 | 0.84 | 0.86 | 0.88 | 0.94 |\n| enterocyte of epithelium of large intestine | 98 | 0.96 | 0.69 | 0.87 | 0.92 | 0.00 | 0.94 | 0.98 | 0.94 | 0.97 |\n| non-classical monocyte | 93 | 0.76 | 0.78 | 0.76 | 0.75 | 0.00 | 0.72 | 0.85 | 0.77 | 0.80 |\n| double negative thymocyte | 80 | 0.74 | 0.00 | 0.40 | 0.65 | 0.00 | 0.77 | 0.84 | 0.78 | 0.88 |\n| precursor B cell | 108 | 0.78 | 0.87 | 0.75 | 0.81 | 0.00 | 0.88 | 0.95 | 0.93 | 0.90 |\n| mesenchymal cell | 98 | 0.28 | 0.00 | 0.11 | 0.07 | 0.00 | 0.15 | 0.45 | 0.55 | 0.38 |\n| CD8-positive, alpha-beta T cell | 78 | 0.53 | 0.68 | 0.26 | 0.20 | 0.00 | 0.50 | 0.65 | 0.71 | 0.70 |\n| immature B cell | 85 | 0.96 | 0.91 | 0.93 | 0.92 | 0.00 | 0.89 | 0.66 | 0.86 | 0.96 |\n| kidney collecting duct principal cell | 68 | 0.64 | 0.99 | 0.93 | 0.93 | 0.00 | 0.86 | 0.94 | 0.95 | 0.98 |\n| kidney distal convoluted tubule epithelial cell | 69 | 0.00 | 0.97 | 0.88 | 0.91 | 0.00 | 0.89 | 0.91 | 0.88 | 0.93 |\n| endocardial cell | 62 | 0.92 | 0.96 | 0.88 | 0.94 | 0.00 | 0.88 | 0.95 | 0.82 | 0.96 |\n| endothelial cell of hepatic sinusoid | 52 | 0.97 | 0.93 | 0.78 | 0.83 | 0.00 | 0.72 | 0.98 | 0.91 | 0.93 |\n| neutrophil | 62 | 0.63 | 0.62 | 0.68 | 0.71 | 0.00 | 0.85 | 0.91 | 0.79 | 0.84 |\n| CD4-positive, alpha-beta T cell | 49 | 0.00 | 0.30 | 0.17 | 0.19 | 0.00 | 0.23 | 0.39 | 0.37 | 0.43 |\n| late pro-B cell | 59 | 0.78 | 0.80 | 0.45 | 0.69 | 0.00 | 0.85 | 0.78 | 0.79 | 0.88 |\n| adventitial cell | 47 | 0.71 | 0.47 | 0.79 | 0.41 | 0.00 | 0.37 | 0.87 | 0.68 | 0.85 |\n| basal epithelial cell of tracheobronchial tree | 48 | 0.97 | 0.06 | 0.91 | 0.83 | 0.00 | 0.68 | 0.98 | 0.93 | 0.99 |\n| plasmatocyte | 39 | 0.77 | 0.78 | 0.67 | 0.87 | 0.00 | 0.53 | 0.85 | 0.81 | 0.92 |\n| keratinocyte stem cell | 42 | 0.84 | 0.00 | 0.72 | 0.89 | 0.00 | 0.86 | 0.91 | 0.77 | 0.91 |\n| brush cell | 35 | 0.86 | 0.83 | 0.67 | 0.83 | 0.00 | 0.86 | 0.84 | 0.76 | 0.88 |\n| erythroid progenitor cell, mammalian | 37 | 0.78 | 0.00 | 0.48 | 0.39 | 0.00 | 0.23 | 0.71 | 0.60 | 0.89 |\n| naive B cell | 38 | 0.95 | 0.96 | 0.88 | 0.92 | 0.00 | 0.82 | 0.87 | 0.91 | 0.94 |\n| kidney cortex artery cell | 37 | 0.76 | 0.85 | 0.33 | 0.67 | 0.00 | 0.54 | 0.76 | 0.67 | 0.84 |\n| erythrocyte | 30 | 0.63 | 0.49 | 0.71 | 0.62 | 0.00 | 0.38 | 0.83 | 0.71 | 0.81 |\n| intestinal crypt stem cell | 29 | 0.57 | 0.00 | 0.17 | 0.77 | 0.00 | 0.51 | 0.89 | 0.83 | 0.86 |\n| epithelial cell | 30 | 0.65 | 0.04 | 0.75 | 0.66 | 0.00 | 0.67 | 0.92 | 0.78 | 0.80 |\n| pancreatic ductal cell | 28 | 0.78 | 0.56 | 0.80 | 0.85 | 0.00 | 0.83 | 0.86 | 0.86 | 0.84 |\n| cardiac muscle cell | 32 | 0.98 | 0.97 | 1.00 | 1.00 | 0.00 | 0.93 | 0.98 | 0.97 | 0.98 |\n| vein endothelial cell | 32 | 0.54 | 0.76 | 0.50 | 0.71 | 0.00 | 0.67 | 0.87 | 0.79 | 0.81 |\n| pancreatic A cell | 37 | 0.00 | 0.00 | 0.24 | 0.93 | 0.00 | 0.84 | 0.92 | 0.93 | 0.92 |\n| myeloid leukocyte | 28 | 0.51 | 0.07 | 0.49 | 0.06 | 0.00 | 0.06 | 0.60 | 0.81 | 0.87 |\n| Schwann cell | 22 | 0.75 | 0.23 | 0.84 | 0.83 | 0.00 | 0.90 | 0.81 | 0.75 | 0.79 |\n| pancreatic D cell | 21 | 0.33 | 0.37 | 0.36 | 0.91 | 0.00 | 0.86 | 0.91 | 0.98 | 0.93 |\n| mesangial cell | 28 | 0.00 | 0.80 | 0.51 | 0.67 | 0.00 | 0.70 | 0.92 | 0.87 | 0.91 |\n| basophil | 28 | 0.67 | 0.77 | 0.85 | 0.65 | 0.00 | 0.55 | 0.66 | 0.74 | 0.85 |\n| myeloid dendritic cell | 37 | 0.35 | 0.68 | 0.29 | 0.48 | 0.00 | 0.46 | 0.81 | 0.73 | 0.83 |\n| epithelial cell of large intestine | 25 | 0.00 | 0.08 | 0.28 | 0.73 | 0.00 | 0.75 | 0.83 | 0.81 | 0.88 |\n| pulmonary interstitial fibroblast | 25 | 0.88 | 0.85 | 0.94 | 1.00 | 0.00 | 0.94 | 0.94 | 0.91 | 0.98 |\n| kidney loop of Henle ascending limb epithelial cell | 21 | 0.00 | 0.27 | 0.21 | 0.23 | 0.00 | 0.41 | 0.45 | 0.54 | 0.30 |\n| cell of skeletal muscle | 13 | 1.00 | 0.96 | 0.96 | 0.96 | 0.00 | 0.58 | 0.96 | 0.92 | 1.00 |\n| Langerhans cell | 13 | 0.96 | 0.76 | 0.00 | 0.58 | 0.00 | 0.39 | 0.87 | 0.83 | 0.92 |\n| stem cell of epidermis | 9 | 0.49 | 0.00 | 0.80 | 0.86 | 0.00 | 0.13 | 0.82 | 0.56 | 0.86 |\n| kidney capillary endothelial cell | 19 | 0.29 | 0.54 | 0.32 | 0.41 | 0.00 | 0.28 | 0.38 | 0.35 | 0.34 |\n| large intestine goblet cell | 18 | 0.00 | 0.00 | 0.62 | 0.91 | 0.00 | 0.89 | 1.00 | 0.94 | 0.97 |\n| pancreatic PP cell | 14 | 0.00 | 0.00 | 0.00 | 0.88 | 0.00 | 0.76 | 0.86 | 0.92 | 0.93 |\n| macrophage dendritic cell progenitor | 25 | 0.00 | 0.52 | 0.16 | 0.38 | 0.00 | 0.70 | 0.69 | 0.49 | 0.70 |\n| DN3 thymocyte | 15 | 0.93 | 0.85 | 0.00 | 0.93 | 0.00 | 0.85 | 0.86 | 0.85 | 0.93 |\n| smooth muscle cell of trachea | 11 | 0.00 | 0.00 | 0.38 | 0.38 | 0.00 | 0.12 | 0.62 | 0.64 | 0.31 |\n| regulatory T cell | 11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.23 | 0.20 | 0.21 | 0.00 |\n| plasmacytoid dendritic cell | 16 | 0.48 | 0.40 | 0.17 | 0.32 | 0.00 | 0.59 | 0.65 | 0.32 | 0.64 |\n| smooth muscle cell of the pulmonary artery | 6 | 0.00 | 0.80 | 0.67 | 0.46 | 0.00 | 0.45 | 0.86 | 0.62 | 0.80 |\n| kidney proximal straight tubule epithelial cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.24 | 0.21 | 0.00 |\n| blood cell | 11 | 0.00 | 0.00 | 0.00 | 0.14 | 0.00 | 0.00 | 0.27 | 0.31 | 0.00 |\n| immature NK T cell | 6 | 0.29 | 0.22 | 0.33 | 0.25 | 0.00 | 0.10 | 0.32 | 0.57 | 0.40 |\n| cardiac neuron | 7 | 0.00 | 0.22 | 0.40 | 0.24 | 0.00 | 0.24 | 0.48 | 0.59 | 0.44 |\n| mast cell | 4 | 0.00 | 0.00 | 0.16 | 0.00 | 0.00 | 0.17 | 0.60 | 0.43 | 0.31 |\n| pericyte | 8 | 1.00 | 0.94 | 0.93 | 0.94 | 0.00 | 0.94 | 0.70 | 1.00 | 1.00 |\n| ciliated columnar cell of tracheobronchial tree | 3 | 0.00 | 0.04 | 0.75 | 0.86 | 0.00 | 0.55 | 0.14 | 1.00 | 1.00 |\n| neuroendocrine cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.00 |\n| dendritic cell | 8 | 0.00 | 0.00 | 0.36 | 0.00 | 0.00 | 0.19 | 0.67 | 0.47 | 0.55 |\n| endothelial cell of lymphatic vessel | 3 | 0.00 | 0.50 | 0.80 | 0.00 | 0.00 | 0.14 | 0.67 | 0.36 | 0.80 |\n| hepatic stellate cell | 3 | 0.00 | 0.00 | 0.80 | 0.67 | 0.00 | 0.22 | 1.00 | 0.80 | 0.80 |\n| hematopoietic stem cell | 5 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 | 0.38 | 0.55 | 0.67 | 0.57 |\n| kidney collecting duct epithelial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pancreatic stellate cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 1.00 | 0.00 | 0.00 |\n| club cell | 1 | 0.15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.07 | 0.00 | 0.15 | 0.17 |\n| lung neuroendocrine cell | 1 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.00 | 0.15 | 1.00 | 1.00 |\n| kidney cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| duct epithelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 27660 | 0.94 | 0.91 | 0.94 | 0.95 | 0.00 | 0.95 | 0.88 | 0.89 | 0.96 |\n| mesenchymal stem cell | 13194 | 0.90 | 0.80 | 0.97 | 0.91 | 0.00 | 0.85 | 0.94 | 0.91 | 0.96 |\n| granulocyte | 11345 | 0.88 | 0.88 | 0.94 | 0.93 | 0.00 | 0.91 | 0.81 | 0.86 | 0.92 |\n| basal cell of epidermis | 10288 | 0.89 | 0.88 | 0.94 | 0.95 | 0.00 | 0.87 | 0.89 | 0.85 | 0.95 |\n| T cell | 10273 | 0.83 | 0.77 | 0.82 | 0.87 | 0.00 | 0.89 | 0.75 | 0.78 | 0.92 |\n| keratinocyte | 10024 | 0.89 | 0.83 | 0.95 | 0.95 | 0.00 | 0.87 | 0.91 | 0.88 | 0.96 |\n| endothelial cell | 8853 | 0.89 | 0.86 | 0.89 | 0.93 | 0.00 | 0.92 | 0.96 | 0.91 | 0.97 |\n| classical monocyte | 7123 | 0.85 | 0.48 | 0.86 | 0.90 | 0.00 | 0.90 | 0.86 | 0.86 | 0.94 |\n| granulocytopoietic cell | 6828 | 0.80 | 0.75 | 0.93 | 0.91 | 0.00 | 0.85 | 0.80 | 0.83 | 0.90 |\n| macrophage | 6456 | 0.69 | 0.62 | 0.84 | 0.82 | 0.00 | 0.84 | 0.72 | 0.75 | 0.87 |\n| bladder urothelial cell | 4685 | 0.99 | 0.99 | 1.00 | 0.98 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| proerythroblast | 4120 | 0.66 | 0.68 | 0.85 | 0.82 | 0.00 | 0.83 | 0.66 | 0.73 | 0.82 |\n| kidney proximal convoluted tubule epithelial cell | 4029 | 0.86 | 0.82 | 0.89 | 0.89 | 0.00 | 0.89 | 0.92 | 0.91 | 0.92 |\n| endothelial cell of coronary artery | 2960 | 0.77 | 0.81 | 0.81 | 0.89 | 0.00 | 0.98 | 0.97 | 0.91 | 0.98 |\n| epithelial cell of proximal tubule | 2746 | 0.80 | 0.71 | 0.84 | 0.83 | 0.00 | 0.85 | 0.89 | 0.87 | 0.89 |\n| bladder cell | 2704 | 0.97 | 0.97 | 1.00 | 0.88 | 0.00 | 0.91 | 0.99 | 0.97 | 0.99 |\n| mature NK T cell | 2686 | 0.67 | 0.69 | 0.68 | 0.82 | 0.00 | 0.80 | 0.70 | 0.76 | 0.85 |\n| hepatocyte | 2626 | 0.99 | 1.00 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| erythroblast | 2646 | 0.70 | 0.72 | 0.84 | 0.87 | 0.00 | 0.91 | 0.76 | 0.81 | 0.87 |\n| promonocyte | 2542 | 0.81 | 0.78 | 0.88 | 0.91 | 0.00 | 0.91 | 0.91 | 0.90 | 0.93 |\n| stromal cell | 2511 | 0.71 | 0.01 | 0.98 | 0.77 | 0.00 | 0.83 | 0.94 | 0.81 | 0.93 |\n| megakaryocyte-erythroid progenitor cell | 2444 | 0.70 | 0.73 | 0.83 | 0.84 | 0.00 | 0.87 | 0.76 | 0.77 | 0.86 |\n| type B pancreatic cell | 2405 | 0.92 | 0.64 | 0.92 | 0.99 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| Kupffer cell | 2283 | 0.97 | 0.39 | 0.84 | 0.91 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| natural killer cell | 2217 | 0.85 | 0.84 | 0.76 | 0.87 | 0.00 | 0.89 | 0.89 | 0.90 | 0.92 |\n| professional antigen presenting cell | 2208 | 0.00 | 0.00 | 0.31 | 0.35 | 0.00 | 0.97 | 0.56 | 0.50 | 0.46 |\n| fibroblast of cardiac tissue | 2162 | 0.98 | 0.97 | 0.97 | 0.80 | 0.00 | 0.93 | 0.99 | 0.96 | 1.00 |\n| monocyte | 2147 | 0.77 | 0.45 | 0.87 | 0.85 | 0.00 | 0.92 | 0.92 | 0.88 | 0.93 |\n| bronchial smooth muscle cell | 2118 | 0.97 | 0.97 | 0.85 | 0.96 | 0.00 | 0.98 | 0.98 | 0.97 | 0.99 |\n| hematopoietic precursor cell | 1934 | 0.57 | 0.68 | 0.67 | 0.83 | 0.00 | 0.91 | 0.74 | 0.84 | 0.90 |\n| pancreatic acinar cell | 1912 | 0.98 | 0.97 | 0.91 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| skeletal muscle satellite cell | 1872 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 0.98 | 0.97 | 0.99 |\n| DN4 thymocyte | 1805 | 0.28 | 0.01 | 0.58 | 0.67 | 0.00 | 0.95 | 0.66 | 0.65 | 0.79 |\n| luminal epithelial cell of mammary gland | 1723 | 0.93 | 0.88 | 0.97 | 0.96 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| mesenchymal stem cell of adipose tissue | 1705 | 0.57 | 0.16 | 0.87 | 0.69 | 0.00 | 0.97 | 0.93 | 0.79 | 0.94 |\n| thymocyte | 1717 | 0.98 | 0.13 | 0.93 | 0.98 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |\n| myeloid cell | 1637 | 0.57 | 0.01 | 0.73 | 0.70 | 0.00 | 0.96 | 0.89 | 0.83 | 0.92 |\n| fibroblast | 1634 | 0.63 | 0.05 | 0.79 | 0.77 | 0.00 | 0.73 | 0.79 | 0.81 | 0.87 |\n| immature T cell | 1612 | 0.91 | 0.37 | 0.94 | 0.97 | 0.00 | 0.97 | 0.97 | 0.94 | 0.97 |\n| intermediate monocyte | 1573 | 0.64 | 0.23 | 0.69 | 0.78 | 0.00 | 0.71 | 0.65 | 0.65 | 0.81 |\n| epidermal cell | 1560 | 0.93 | 0.00 | 0.94 | 0.94 | 0.00 | 0.93 | 0.90 | 0.89 | 0.96 |\n| chondrocyte | 1470 | 0.84 | 0.00 | 0.89 | 0.88 | 0.00 | 0.89 | 0.92 | 0.92 | 0.93 |\n| plasma cell | 1468 | 0.63 | 0.65 | 0.80 | 0.82 | 0.00 | 0.71 | 0.69 | 0.74 | 0.84 |\n| smooth muscle cell | 1430 | 0.74 | 0.81 | 0.88 | 0.93 | 0.00 | 0.88 | 0.90 | 0.85 | 0.85 |\n| lymphocyte | 1444 | 0.24 | 0.20 | 0.67 | 0.52 | 0.00 | 0.81 | 0.40 | 0.52 | 0.73 |\n| basal cell | 1431 | 0.98 | 0.97 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |\n| naive T cell | 1417 | 0.78 | 0.91 | 0.94 | 0.94 | 0.00 | 0.91 | 0.91 | 0.91 | 0.93 |\n| kidney loop of Henle thick ascending limb epithelial cell | 1402 | 0.93 | 0.93 | 0.94 | 0.93 | 0.00 | 0.92 | 0.97 | 0.96 | 0.95 |\n| fibroblast of lung | 1377 | 0.94 | 0.91 | 0.95 | 0.97 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| leukocyte | 1354 | 0.64 | 0.53 | 0.74 | 0.68 | 0.00 | 0.91 | 0.83 | 0.81 | 0.93 |\n| alveolar macrophage | 1235 | 0.98 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |\n| lung macrophage | 1030 | 0.89 | 0.03 | 0.79 | 0.87 | 0.00 | 0.95 | 0.90 | 0.89 | 0.96 |\n| enterocyte of epithelium of large intestine | 1027 | 0.95 | 0.00 | 0.94 | 0.96 | 0.00 | 0.97 | 1.00 | 0.99 | 1.00 |\n| non-classical monocyte | 917 | 0.77 | 0.78 | 0.90 | 0.91 | 0.00 | 0.90 | 0.90 | 0.86 | 0.89 |\n| double negative thymocyte | 891 | 0.72 | 0.00 | 0.65 | 0.86 | 0.00 | 0.88 | 0.91 | 0.86 | 0.93 |\n| precursor B cell | 807 | 0.78 | 0.85 | 0.86 | 0.95 | 0.00 | 0.94 | 0.96 | 0.95 | 0.95 |\n| mesenchymal cell | 781 | 0.26 | 0.00 | 0.44 | 0.31 | 0.00 | 0.40 | 0.55 | 0.62 | 0.62 |\n| CD8-positive, alpha-beta T cell | 792 | 0.49 | 0.55 | 0.43 | 0.69 | 0.00 | 0.84 | 0.80 | 0.81 | 0.91 |\n| immature B cell | 741 | 0.94 | 0.89 | 0.94 | 0.93 | 0.00 | 0.90 | 0.69 | 0.87 | 0.94 |\n| kidney collecting duct principal cell | 721 | 0.65 | 0.94 | 0.96 | 0.96 | 0.00 | 0.91 | 0.99 | 0.98 | 0.98 |\n| kidney distal convoluted tubule epithelial cell | 675 | 0.00 | 0.92 | 0.93 | 0.94 | 0.00 | 0.94 | 0.98 | 0.98 | 0.96 |\n| endocardial cell | 615 | 0.89 | 0.90 | 0.92 | 0.93 | 0.00 | 0.95 | 0.96 | 0.85 | 0.98 |\n| endothelial cell of hepatic sinusoid | 622 | 0.97 | 0.95 | 0.82 | 0.90 | 0.00 | 0.87 | 0.99 | 0.98 | 0.99 |\n| neutrophil | 490 | 0.64 | 0.57 | 0.95 | 0.92 | 0.00 | 0.94 | 0.95 | 0.86 | 0.95 |\n| CD4-positive, alpha-beta T cell | 502 | 0.00 | 0.28 | 0.51 | 0.63 | 0.00 | 0.69 | 0.59 | 0.58 | 0.88 |\n| late pro-B cell | 473 | 0.77 | 0.76 | 0.67 | 0.87 | 0.00 | 0.91 | 0.91 | 0.89 | 0.96 |\n| adventitial cell | 479 | 0.78 | 0.54 | 0.94 | 0.67 | 0.00 | 0.71 | 0.90 | 0.78 | 0.95 |\n| basal epithelial cell of tracheobronchial tree | 473 | 0.95 | 0.00 | 0.99 | 0.90 | 0.00 | 0.99 | 0.98 | 0.97 | 0.99 |\n| plasmatocyte | 457 | 0.74 | 0.81 | 0.92 | 0.89 | 0.00 | 0.66 | 0.91 | 0.92 | 0.97 |\n| keratinocyte stem cell | 376 | 0.87 | 0.00 | 0.94 | 0.93 | 0.00 | 0.90 | 0.91 | 0.76 | 0.97 |\n| brush cell | 379 | 0.91 | 0.76 | 0.95 | 0.92 | 0.00 | 0.92 | 0.92 | 0.88 | 0.97 |\n| erythroid progenitor cell, mammalian | 372 | 0.79 | 0.00 | 0.93 | 0.81 | 0.00 | 0.33 | 0.80 | 0.64 | 0.94 |\n| naive B cell | 360 | 0.88 | 0.90 | 0.95 | 0.94 | 0.00 | 0.87 | 0.93 | 0.96 | 0.96 |\n| kidney cortex artery cell | 344 | 0.80 | 0.88 | 0.83 | 0.77 | 0.00 | 0.68 | 0.81 | 0.73 | 0.86 |\n| erythrocyte | 326 | 0.74 | 0.47 | 0.85 | 0.92 | 0.00 | 0.78 | 0.88 | 0.80 | 0.94 |\n| intestinal crypt stem cell | 310 | 0.68 | 0.00 | 0.87 | 0.88 | 0.00 | 0.79 | 1.00 | 0.99 | 0.99 |\n| epithelial cell | 308 | 0.70 | 0.02 | 0.93 | 0.85 | 0.00 | 0.91 | 0.95 | 0.91 | 0.97 |\n| pancreatic ductal cell | 307 | 0.82 | 0.56 | 0.96 | 0.95 | 0.00 | 0.95 | 0.97 | 0.94 | 0.97 |\n| cardiac muscle cell | 302 | 1.00 | 1.00 | 1.00 | 0.99 | 0.00 | 0.90 | 1.00 | 0.99 | 1.00 |\n| vein endothelial cell | 288 | 0.57 | 0.79 | 0.84 | 0.82 | 0.00 | 0.84 | 0.92 | 0.88 | 0.94 |\n| pancreatic A cell | 272 | 0.00 | 0.00 | 0.71 | 0.92 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |\n| myeloid leukocyte | 278 | 0.51 | 0.06 | 0.89 | 0.51 | 0.00 | 0.94 | 0.69 | 0.87 | 0.96 |\n| Schwann cell | 252 | 0.75 | 0.23 | 0.95 | 0.90 | 0.00 | 0.95 | 0.89 | 0.85 | 0.91 |\n| pancreatic D cell | 250 | 0.39 | 0.16 | 0.87 | 0.95 | 0.00 | 0.93 | 0.99 | 0.99 | 0.97 |\n| mesangial cell | 233 | 0.00 | 0.84 | 0.77 | 0.85 | 0.00 | 0.75 | 0.94 | 0.93 | 0.98 |\n| basophil | 226 | 0.59 | 0.63 | 0.89 | 0.86 | 0.00 | 0.78 | 0.78 | 0.81 | 0.86 |\n| myeloid dendritic cell | 208 | 0.33 | 0.64 | 0.84 | 0.62 | 0.00 | 0.64 | 0.81 | 0.78 | 0.93 |\n| epithelial cell of large intestine | 204 | 0.00 | 0.00 | 0.72 | 0.81 | 0.00 | 0.85 | 0.99 | 0.96 | 0.97 |\n| pulmonary interstitial fibroblast | 197 | 0.88 | 0.86 | 0.96 | 0.96 | 0.00 | 0.95 | 0.89 | 0.97 | 0.98 |\n| kidney loop of Henle ascending limb epithelial cell | 180 | 0.00 | 0.23 | 0.41 | 0.16 | 0.00 | 0.63 | 0.82 | 0.81 | 0.54 |\n| cell of skeletal muscle | 179 | 0.98 | 0.94 | 0.98 | 0.95 | 0.00 | 0.74 | 0.98 | 0.97 | 0.98 |\n| Langerhans cell | 162 | 0.92 | 0.79 | 0.97 | 0.86 | 0.00 | 0.84 | 0.96 | 0.87 | 1.00 |\n| stem cell of epidermis | 162 | 0.68 | 0.00 | 0.81 | 0.84 | 0.00 | 0.40 | 0.91 | 0.78 | 0.93 |\n| kidney capillary endothelial cell | 142 | 0.23 | 0.34 | 0.46 | 0.35 | 0.00 | 0.24 | 0.30 | 0.30 | 0.28 |\n| large intestine goblet cell | 140 | 0.00 | 0.00 | 0.94 | 0.97 | 0.00 | 0.87 | 1.00 | 1.00 | 1.00 |\n| pancreatic PP cell | 143 | 0.00 | 0.00 | 0.71 | 0.90 | 0.00 | 0.93 | 0.99 | 0.98 | 0.99 |\n| macrophage dendritic cell progenitor | 123 | 0.00 | 0.20 | 0.41 | 0.79 | 0.00 | 0.79 | 0.86 | 0.84 | 0.87 |\n| DN3 thymocyte | 131 | 0.83 | 0.49 | 0.87 | 0.91 | 0.00 | 0.96 | 0.97 | 0.91 | 0.97 |\n| smooth muscle cell of trachea | 116 | 0.00 | 0.00 | 0.50 | 0.55 | 0.00 | 0.81 | 0.89 | 0.88 | 0.86 |\n| regulatory T cell | 112 | 0.00 | 0.05 | 0.18 | 0.38 | 0.00 | 0.49 | 0.56 | 0.42 | 0.77 |\n| plasmacytoid dendritic cell | 100 | 0.38 | 0.32 | 0.45 | 0.78 | 0.00 | 0.77 | 0.87 | 0.81 | 0.92 |\n| smooth muscle cell of the pulmonary artery | 92 | 0.00 | 0.67 | 0.88 | 0.70 | 0.00 | 0.73 | 0.96 | 0.84 | 0.93 |\n| kidney proximal straight tubule epithelial cell | 88 | 0.00 | 0.00 | 0.14 | 0.02 | 0.00 | 0.66 | 0.61 | 0.48 | 0.41 |\n| blood cell | 77 | 0.00 | 0.00 | 0.39 | 0.34 | 0.00 | 0.27 | 0.44 | 0.36 | 0.57 |\n| immature NK T cell | 78 | 0.29 | 0.06 | 0.66 | 0.66 | 0.00 | 0.31 | 0.50 | 0.56 | 0.77 |\n| cardiac neuron | 74 | 0.00 | 0.27 | 0.92 | 0.72 | 0.00 | 0.78 | 0.76 | 0.91 | 0.96 |\n| mast cell | 72 | 0.00 | 0.00 | 0.87 | 0.76 | 0.00 | 0.73 | 0.86 | 0.78 | 0.94 |\n| pericyte | 53 | 0.98 | 0.85 | 0.92 | 0.92 | 0.00 | 0.97 | 0.63 | 0.94 | 0.99 |\n| ciliated columnar cell of tracheobronchial tree | 54 | 0.00 | 0.05 | 0.69 | 0.95 | 0.00 | 0.93 | 0.41 | 1.00 | 0.97 |\n| neuroendocrine cell | 41 | 0.00 | 0.00 | 0.25 | 0.28 | 0.00 | 0.76 | 0.99 | 0.76 | 0.61 |\n| dendritic cell | 37 | 0.00 | 0.00 | 0.59 | 0.49 | 0.00 | 0.30 | 0.79 | 0.69 | 0.93 |\n| endothelial cell of lymphatic vessel | 38 | 0.00 | 0.30 | 0.93 | 0.65 | 0.00 | 0.20 | 0.75 | 0.52 | 0.97 |\n| hepatic stellate cell | 36 | 0.00 | 0.05 | 0.81 | 0.91 | 0.00 | 0.48 | 0.99 | 0.99 | 0.99 |\n| hematopoietic stem cell | 31 | 0.00 | 0.00 | 0.28 | 0.73 | 0.00 | 0.45 | 0.78 | 0.87 | 0.97 |\n| kidney collecting duct epithelial cell | 23 | 0.00 | 0.00 | 0.08 | 0.00 | 0.00 | 0.73 | 1.00 | 0.92 | 0.16 |\n| pancreatic stellate cell | 20 | 0.00 | 0.00 | 0.71 | 0.26 | 0.00 | 0.23 | 0.89 | 1.00 | 0.97 |\n| club cell | 14 | 0.07 | 0.00 | 0.25 | 0.11 | 0.00 | 0.17 | 0.21 | 0.20 | 0.15 |\n| lung neuroendocrine cell | 3 | 0.00 | 0.00 | 1.00 | 0.80 | 0.00 | 0.60 | 0.03 | 1.00 | 1.00 |\n| kidney cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.60 | 0.02 | 0.86 | 0.80 |\n| duct epithelial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.57 | 1.00 | 0.07 | 0.00 |"
4
+ }
celltypist.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b31354474760e3256753d9c6043aab098dbea9462a7f82dd46ed39a662f2747a
3
+ size 2104618
checkpoint ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ model_checkpoint_path: "OnClass"
2
+ all_model_checkpoint_paths: "OnClass"
harmony_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a37a1e07e80852e05be142ff06793632ef29bf056371c29c275de7d2d8f9aa82
3
+ size 169060455
obo_dag.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
3
+ size 321386
popv_output/predictions.csv ADDED
The diff for this file is too large to render. See raw diff
 
preprocessing.json ADDED
The diff for this file is too large to render. See raw diff
 
pynndescent_index.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4e18888387fef87635e7142e09f79c9ee78430c052ec0a42e5bbb9c881ec834f
3
+ size 180119814
scanvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a67e217abe4476a2b38f5ce26929b9442bbcf4e238b55bb5500cb6aaf2b47bde
3
+ size 14955564
scvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6e2722e472f2763b0ae4684af26aac13f77ef4852d965f1416cdc4e4a0614f0e
3
+ size 14040637
scvi_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:42ab94618641e4a81209838b4ef6bf5884cf8ff4b31a7fbcefceb9a68e4fd74c
3
+ size 96034455
svm_classifier_cuml.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bb3534b0c0a4ab74606867df88650493eba46e159410f08e2062a9a2eca4c56c
3
+ size 2046619
xgboost_classifier.model ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:90d47e083fe5d43bc38c312df8a21243fdfc5d79bdbbfefa27071d3924e20be1
3
+ size 30521246