Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Mus musculus
Python:3.12.8
popV:0.6.0
tissue: brain
tissue: tongue
tissue: limb muscle
tissue: brown adipose tissue
tissue: thymus
tissue: bone marrow
tissue: spleen
tissue: trachea
tissue: large intestine
tissue: liver
tissue: skin of body
tissue: mesenteric fat pad
tissue: lung
tissue: diaphragm
tissue: subcutaneous adipose tissue
tissue: heart
tissue: bladder lumen
tissue: kidney
tissue: pancreas
tissue: mammary gland
tissue: gonadal fat pad
tissue: aorta
File size: 927 Bytes
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{
"popv_version": "0.6.0",
"anndata_version": "0.12.2",
"scikit_learn_version": "1.7.2",
"setup_dict": {
"ref_batch_key": "batch_key",
"ref_labels_key": "popv_labels",
"unknown_celltype_label": "unassigned"
},
"prediction_keys": [
"popv_celltypist_prediction",
"popv_knn_bbknn_prediction",
"popv_knn_harmony_prediction",
"popv_knn_on_scvi_prediction",
"popv_onclass_prediction",
"popv_scanvi_prediction",
"popv_svm_prediction",
"popv_xgboost_prediction"
],
"method_kwargs": {},
"methods": [
"CELLTYPIST",
"KNN_BBKNN",
"KNN_HARMONY",
"KNN_SCVI",
"ONCLASS",
"SCANVI_POPV",
"Support_Vector",
"XGboost"
],
"cellxgene_url": "https://cellxgene.cziscience.com/e/98e5ea9f-16d6-47ec-a529-686e76515e39.cxg/",
"organism": "Mus musculus"
} |