| { | |
| "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 1640 | 0.97 | 0.97 | 0.97 | 0.97 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |\n| pulmonary alveolar type 2 cell | 1146 | 0.97 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| capillary endothelial cell | 695 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |\n| basal cell | 408 | 0.91 | 0.92 | 0.92 | 0.94 | 0.00 | 0.92 | 0.94 | 0.93 | 0.95 |\n| pulmonary alveolar type 1 cell | 303 | 0.97 | 0.98 | 0.96 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| intermediate monocyte | 287 | 0.66 | 0.64 | 0.71 | 0.68 | 0.00 | 0.64 | 0.75 | 0.86 | 0.77 |\n| CD4-positive, alpha-beta T cell | 212 | 0.87 | 0.90 | 0.88 | 0.88 | 0.00 | 0.88 | 0.85 | 0.87 | 0.89 |\n| CD8-positive, alpha-beta T cell | 196 | 0.84 | 0.87 | 0.85 | 0.83 | 0.00 | 0.84 | 0.80 | 0.84 | 0.86 |\n| endothelial cell of artery | 161 | 0.79 | 0.81 | 0.83 | 0.81 | 0.00 | 0.77 | 0.74 | 0.79 | 0.84 |\n| club cell | 172 | 0.78 | 0.85 | 0.87 | 0.83 | 0.00 | 0.82 | 0.85 | 0.83 | 0.88 |\n| classical monocyte | 153 | 0.55 | 0.56 | 0.62 | 0.60 | 0.00 | 0.64 | 0.72 | 0.90 | 0.75 |\n| vein endothelial cell | 140 | 0.83 | 0.81 | 0.83 | 0.84 | 0.00 | 0.84 | 0.80 | 0.86 | 0.88 |\n| basophil | 153 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.97 | 0.98 | 0.99 |\n| lung ciliated cell | 128 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| alveolar adventitial fibroblast | 115 | 0.83 | 0.86 | 0.86 | 0.90 | 0.00 | 0.90 | 0.91 | 0.92 | 0.92 |\n| respiratory goblet cell | 108 | 0.74 | 0.82 | 0.82 | 0.81 | 0.00 | 0.79 | 0.85 | 0.82 | 0.83 |\n| natural killer cell | 102 | 0.85 | 0.89 | 0.88 | 0.89 | 0.00 | 0.90 | 0.88 | 0.89 | 0.89 |\n| pericyte | 78 | 0.83 | 0.89 | 0.89 | 0.92 | 0.00 | 0.87 | 0.92 | 0.90 | 0.92 |\n| B cell | 64 | 0.98 | 0.99 | 0.99 | 0.97 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |\n| adventitial cell | 61 | 0.83 | 0.84 | 0.78 | 0.84 | 0.00 | 0.83 | 0.85 | 0.89 | 0.89 |\n| non-classical monocyte | 54 | 0.36 | 0.12 | 0.26 | 0.26 | 0.00 | 0.38 | 0.54 | 0.80 | 0.53 |\n| monocyte | 50 | 0.34 | 0.24 | 0.38 | 0.39 | 0.00 | 0.42 | 0.42 | 0.73 | 0.52 |\n| neutrophil | 37 | 0.93 | 0.96 | 0.93 | 0.97 | 0.00 | 0.95 | 0.96 | 0.91 | 0.97 |\n| endothelial cell of lymphatic vessel | 30 | 0.95 | 0.94 | 0.94 | 0.94 | 0.00 | 0.95 | 0.98 | 0.97 | 0.97 |\n| bronchial smooth muscle cell | 25 | 0.52 | 0.58 | 0.49 | 0.43 | 0.00 | 0.60 | 0.75 | 0.68 | 0.69 |\n| mature NK T cell | 27 | 0.00 | 0.26 | 0.19 | 0.19 | 0.00 | 0.68 | 0.46 | 0.60 | 0.43 |\n| plasma cell | 13 | 0.83 | 0.74 | 0.92 | 0.92 | 0.00 | 0.85 | 0.96 | 0.89 | 0.92 |\n| vascular associated smooth muscle cell | 16 | 0.00 | 0.67 | 0.85 | 0.67 | 0.00 | 0.76 | 0.91 | 0.73 | 0.90 |\n| myeloid dendritic cell | 5 | 0.00 | 0.00 | 0.80 | 0.57 | 0.00 | 0.46 | 0.50 | 1.00 | 0.75 |\n| pulmonary ionocyte | 1 | 0.00 | 1.00 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 1.00 | 0.00 | 1.00 | 0.67 | 0.00 | 0.50 | 1.00 | 0.00 | 1.00 |\n| mesothelial cell | 2 | 0.00 | 0.67 | 0.67 | 0.67 | 0.00 | 0.67 | 0.50 | 0.67 | 0.67 |\n| serous cell of epithelium of bronchus | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 0.80 | 1.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |", | |
| "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 14846 | 0.96 | 0.98 | 0.97 | 0.98 | 0.00 | 0.94 | 0.96 | 0.96 | 0.98 |\n| pulmonary alveolar type 2 cell | 10448 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| capillary endothelial cell | 6548 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.95 | 0.96 | 0.96 | 0.98 |\n| basal cell | 3607 | 0.92 | 0.94 | 0.95 | 0.95 | 0.00 | 0.94 | 0.95 | 0.95 | 0.97 |\n| pulmonary alveolar type 1 cell | 2813 | 0.95 | 0.98 | 0.97 | 0.97 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| intermediate monocyte | 2498 | 0.67 | 0.69 | 0.75 | 0.74 | 0.00 | 0.69 | 0.81 | 0.86 | 0.83 |\n| CD4-positive, alpha-beta T cell | 1912 | 0.87 | 0.89 | 0.89 | 0.89 | 0.00 | 0.90 | 0.90 | 0.91 | 0.92 |\n| CD8-positive, alpha-beta T cell | 1702 | 0.85 | 0.85 | 0.86 | 0.86 | 0.00 | 0.87 | 0.87 | 0.88 | 0.90 |\n| endothelial cell of artery | 1593 | 0.78 | 0.81 | 0.83 | 0.83 | 0.00 | 0.79 | 0.80 | 0.83 | 0.85 |\n| club cell | 1575 | 0.80 | 0.83 | 0.89 | 0.86 | 0.00 | 0.84 | 0.88 | 0.87 | 0.91 |\n| classical monocyte | 1416 | 0.59 | 0.61 | 0.65 | 0.67 | 0.00 | 0.72 | 0.82 | 0.93 | 0.82 |\n| vein endothelial cell | 1196 | 0.79 | 0.83 | 0.85 | 0.84 | 0.00 | 0.85 | 0.86 | 0.89 | 0.88 |\n| basophil | 1169 | 0.97 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| lung ciliated cell | 1081 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| alveolar adventitial fibroblast | 998 | 0.87 | 0.87 | 0.87 | 0.92 | 0.00 | 0.93 | 0.97 | 0.96 | 0.95 |\n| respiratory goblet cell | 932 | 0.77 | 0.87 | 0.88 | 0.87 | 0.00 | 0.85 | 0.87 | 0.89 | 0.91 |\n| natural killer cell | 917 | 0.91 | 0.92 | 0.91 | 0.92 | 0.00 | 0.93 | 0.96 | 0.96 | 0.96 |\n| pericyte | 661 | 0.79 | 0.89 | 0.92 | 0.92 | 0.00 | 0.94 | 0.98 | 0.98 | 0.97 |\n| B cell | 599 | 0.97 | 0.97 | 0.97 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| adventitial cell | 520 | 0.82 | 0.82 | 0.78 | 0.87 | 0.00 | 0.87 | 0.95 | 0.94 | 0.93 |\n| non-classical monocyte | 473 | 0.27 | 0.11 | 0.22 | 0.19 | 0.00 | 0.52 | 0.71 | 0.80 | 0.62 |\n| monocyte | 456 | 0.42 | 0.33 | 0.50 | 0.47 | 0.00 | 0.65 | 0.76 | 0.84 | 0.73 |\n| neutrophil | 334 | 0.94 | 0.97 | 0.97 | 0.96 | 0.00 | 0.95 | 0.98 | 0.96 | 0.98 |\n| endothelial cell of lymphatic vessel | 285 | 0.96 | 0.98 | 0.97 | 0.96 | 0.00 | 0.96 | 0.99 | 0.99 | 0.98 |\n| bronchial smooth muscle cell | 195 | 0.51 | 0.60 | 0.68 | 0.56 | 0.00 | 0.78 | 0.91 | 0.93 | 0.90 |\n| mature NK T cell | 136 | 0.00 | 0.30 | 0.30 | 0.32 | 0.00 | 0.68 | 0.83 | 0.85 | 0.85 |\n| plasma cell | 135 | 0.87 | 0.85 | 0.91 | 0.95 | 0.00 | 0.96 | 0.96 | 0.97 | 0.98 |\n| vascular associated smooth muscle cell | 115 | 0.00 | 0.56 | 0.72 | 0.56 | 0.00 | 0.84 | 0.95 | 0.96 | 0.93 |\n| myeloid dendritic cell | 28 | 0.00 | 0.19 | 0.83 | 0.71 | 0.00 | 0.37 | 0.89 | 0.98 | 0.97 |\n| pulmonary ionocyte | 24 | 0.00 | 0.92 | 0.86 | 0.83 | 0.00 | 0.79 | 0.92 | 0.94 | 1.00 |\n| plasmacytoid dendritic cell | 18 | 0.90 | 0.00 | 0.95 | 0.84 | 0.00 | 0.65 | 1.00 | 1.00 | 1.00 |\n| mesothelial cell | 16 | 0.00 | 0.78 | 0.75 | 0.84 | 0.00 | 0.55 | 0.86 | 0.91 | 0.86 |\n| serous cell of epithelium of bronchus | 13 | 0.00 | 0.47 | 0.00 | 0.47 | 0.00 | 0.17 | 0.84 | 0.93 | 0.63 |\n| mast cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 0.86 | 0.80 |" | |
| } |