popV version:

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+svm_classifier.joblib filter=lfs diff=lfs merge=lfs -text
+xgboost_classifier.model filter=lfs diff=lfs merge=lfs -text

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 1616 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.93 | 0.97 | 0.96 | 0.98 |\n| pulmonary alveolar type 2 cell | 1176 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |\n| capillary endothelial cell | 712 | 0.97 | 0.95 | 0.97 | 0.97 | 0.00 | 0.97 | 0.95 | 0.96 | 0.98 |\n| basal cell | 424 | 0.93 | 0.93 | 0.94 | 0.94 | 0.00 | 0.94 | 0.94 | 0.93 | 0.95 |\n| pulmonary alveolar type 1 cell | 312 | 0.98 | 0.98 | 0.97 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| intermediate monocyte | 245 | 0.60 | 0.66 | 0.67 | 0.67 | 0.00 | 0.62 | 0.75 | 0.85 | 0.78 |\n| CD4-positive, alpha-beta T cell | 216 | 0.85 | 0.86 | 0.86 | 0.88 | 0.00 | 0.85 | 0.83 | 0.86 | 0.90 |\n| CD8-positive, alpha-beta T cell | 191 | 0.84 | 0.81 | 0.82 | 0.84 | 0.00 | 0.82 | 0.82 | 0.84 | 0.87 |\n| endothelial cell of artery | 180 | 0.82 | 0.83 | 0.82 | 0.84 | 0.00 | 0.81 | 0.74 | 0.79 | 0.85 |\n| club cell | 186 | 0.84 | 0.80 | 0.88 | 0.84 | 0.00 | 0.80 | 0.83 | 0.80 | 0.88 |\n| classical monocyte | 167 | 0.61 | 0.64 | 0.59 | 0.56 | 0.00 | 0.71 | 0.76 | 0.90 | 0.80 |\n| vein endothelial cell | 129 | 0.83 | 0.82 | 0.84 | 0.84 | 0.00 | 0.83 | 0.79 | 0.83 | 0.86 |\n| basophil | 164 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| lung ciliated cell | 114 | 0.96 | 0.95 | 0.97 | 0.98 | 0.00 | 0.95 | 0.98 | 0.97 | 0.97 |\n| alveolar adventitial fibroblast | 115 | 0.84 | 0.84 | 0.78 | 0.87 | 0.00 | 0.86 | 0.89 | 0.86 | 0.88 |\n| respiratory goblet cell | 89 | 0.80 | 0.84 | 0.84 | 0.84 | 0.00 | 0.81 | 0.80 | 0.82 | 0.86 |\n| natural killer cell | 106 | 0.91 | 0.95 | 0.93 | 0.93 | 0.00 | 0.92 | 0.90 | 0.90 | 0.94 |\n| pericyte | 75 | 0.78 | 0.88 | 0.90 | 0.91 | 0.00 | 0.86 | 0.95 | 0.91 | 0.92 |\n| B cell | 75 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 1.00 | 0.99 |\n| adventitial cell | 59 | 0.77 | 0.77 | 0.74 | 0.83 | 0.00 | 0.83 | 0.86 | 0.83 | 0.87 |\n| non-classical monocyte | 56 | 0.23 | 0.16 | 0.14 | 0.06 | 0.00 | 0.19 | 0.50 | 0.80 | 0.35 |\n| monocyte | 40 | 0.49 | 0.35 | 0.41 | 0.42 | 0.00 | 0.38 | 0.38 | 0.68 | 0.55 |\n| neutrophil | 38 | 0.95 | 0.96 | 0.96 | 0.97 | 0.00 | 0.95 | 0.94 | 0.95 | 0.99 |\n| endothelial cell of lymphatic vessel | 26 | 0.95 | 0.98 | 0.96 | 0.96 | 0.00 | 0.93 | 0.93 | 0.98 | 0.96 |\n| bronchial smooth muscle cell | 23 | 0.48 | 0.60 | 0.61 | 0.74 | 0.00 | 0.72 | 0.68 | 0.72 | 0.77 |\n| mature NK T cell | 15 | 0.00 | 0.24 | 0.30 | 0.32 | 0.00 | 0.57 | 0.26 | 0.36 | 0.38 |\n| plasma cell | 16 | 0.85 | 0.86 | 0.97 | 0.97 | 0.00 | 0.91 | 1.00 | 0.91 | 1.00 |\n| vascular associated smooth muscle cell | 12 | 0.34 | 0.57 | 0.43 | 0.72 | 0.00 | 0.56 | 0.64 | 0.67 | 0.71 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.67 | 0.67 | 0.00 | 0.22 | 0.67 | 0.40 | 0.67 |\n| pulmonary ionocyte | 4 | 1.00 | 1.00 | 0.86 | 0.67 | 0.00 | 0.57 | 1.00 | 1.00 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.67 | 0.00 | 1.00 | 1.00 | 0.00 | 0.50 | 0.67 | 1.00 | 1.00 |\n| mesothelial cell | 2 | 0.67 | 0.67 | 0.67 | 0.80 | 0.00 | 0.50 | 0.80 | 0.67 | 0.80 |\n| serous cell of epithelium of bronchus | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 14870 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.94 | 0.96 | 0.96 | 0.98 |\n| pulmonary alveolar type 2 cell | 10418 | 0.97 | 0.97 | 0.98 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| capillary endothelial cell | 6531 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.97 | 0.96 | 0.97 | 0.98 |\n| basal cell | 3591 | 0.93 | 0.94 | 0.95 | 0.94 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |\n| pulmonary alveolar type 1 cell | 2804 | 0.97 | 0.98 | 0.97 | 0.95 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| intermediate monocyte | 2540 | 0.66 | 0.71 | 0.75 | 0.74 | 0.00 | 0.68 | 0.81 | 0.87 | 0.83 |\n| CD4-positive, alpha-beta T cell | 1908 | 0.86 | 0.89 | 0.88 | 0.90 | 0.00 | 0.89 | 0.90 | 0.91 | 0.92 |\n| CD8-positive, alpha-beta T cell | 1707 | 0.84 | 0.85 | 0.85 | 0.87 | 0.00 | 0.87 | 0.87 | 0.89 | 0.90 |\n| endothelial cell of artery | 1574 | 0.79 | 0.81 | 0.83 | 0.83 | 0.00 | 0.82 | 0.83 | 0.84 | 0.85 |\n| club cell | 1561 | 0.82 | 0.84 | 0.89 | 0.86 | 0.00 | 0.81 | 0.87 | 0.87 | 0.90 |\n| classical monocyte | 1402 | 0.60 | 0.63 | 0.67 | 0.66 | 0.00 | 0.70 | 0.82 | 0.93 | 0.82 |\n| vein endothelial cell | 1207 | 0.81 | 0.83 | 0.85 | 0.84 | 0.00 | 0.85 | 0.87 | 0.89 | 0.87 |\n| basophil | 1158 | 0.97 | 0.98 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.98 |\n| lung ciliated cell | 1095 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| alveolar adventitial fibroblast | 998 | 0.88 | 0.87 | 0.87 | 0.93 | 0.00 | 0.92 | 0.97 | 0.97 | 0.95 |\n| respiratory goblet cell | 951 | 0.80 | 0.88 | 0.86 | 0.86 | 0.00 | 0.86 | 0.88 | 0.88 | 0.90 |\n| natural killer cell | 913 | 0.88 | 0.92 | 0.91 | 0.92 | 0.00 | 0.94 | 0.96 | 0.97 | 0.96 |\n| pericyte | 664 | 0.81 | 0.89 | 0.92 | 0.92 | 0.00 | 0.92 | 0.97 | 0.98 | 0.96 |\n| B cell | 588 | 0.97 | 0.96 | 0.97 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.98 |\n| adventitial cell | 522 | 0.80 | 0.83 | 0.80 | 0.89 | 0.00 | 0.91 | 0.95 | 0.95 | 0.93 |\n| non-classical monocyte | 471 | 0.30 | 0.08 | 0.26 | 0.17 | 0.00 | 0.33 | 0.71 | 0.81 | 0.63 |\n| monocyte | 466 | 0.45 | 0.31 | 0.46 | 0.50 | 0.00 | 0.55 | 0.78 | 0.83 | 0.75 |\n| neutrophil | 333 | 0.95 | 0.97 | 0.96 | 0.96 | 0.00 | 0.97 | 0.98 | 0.96 | 0.99 |\n| endothelial cell of lymphatic vessel | 289 | 0.97 | 0.97 | 0.97 | 0.97 | 0.00 | 0.96 | 0.99 | 0.99 | 0.98 |\n| bronchial smooth muscle cell | 197 | 0.46 | 0.61 | 0.68 | 0.65 | 0.00 | 0.75 | 0.94 | 0.94 | 0.89 |\n| mature NK T cell | 148 | 0.00 | 0.28 | 0.33 | 0.30 | 0.00 | 0.74 | 0.83 | 0.88 | 0.89 |\n| plasma cell | 132 | 0.90 | 0.85 | 0.92 | 0.92 | 0.00 | 0.84 | 0.97 | 0.94 | 0.95 |\n| vascular associated smooth muscle cell | 119 | 0.50 | 0.64 | 0.76 | 0.59 | 0.00 | 0.80 | 0.96 | 0.96 | 0.92 |\n| myeloid dendritic cell | 32 | 0.00 | 0.11 | 0.78 | 0.50 | 0.00 | 0.64 | 0.90 | 0.98 | 0.94 |\n| pulmonary ionocyte | 21 | 0.93 | 0.87 | 0.83 | 0.84 | 0.00 | 0.56 | 0.95 | 0.93 | 0.95 |\n| plasmacytoid dendritic cell | 18 | 0.88 | 0.00 | 0.95 | 0.95 | 0.00 | 0.88 | 1.00 | 1.00 | 1.00 |\n| mesothelial cell | 16 | 0.63 | 0.76 | 0.76 | 0.78 | 0.00 | 0.64 | 0.82 | 0.84 | 0.76 |\n| serous cell of epithelium of bronchus | 15 | 0.00 | 0.75 | 0.12 | 0.24 | 0.00 | 0.70 | 0.88 | 1.00 | 0.80 |\n| mast cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.35 | 1.00 | 0.75 | 0.80 |"
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checkpoint

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