Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks
Paper • 1908.10084 • Published • 16
How to use shashrao54/embedding-finetuning-model with sentence-transformers:
from sentence_transformers import SentenceTransformer
model = SentenceTransformer("shashrao54/embedding-finetuning-model")
sentences = [
"Explain conforms in this document.",
"PHARMA PRODUCT DOSSIER (SYNTHETIC) Product: Amoxycillin Capsules 500 mg Indication: Treatment of bacterial infections (upper respiratory tract, urinary tract). Mechanism of Action: Beta-lactam antibiotic; inhibits bacterial cell wall synthesis. Contraindications: Hypersensitivity to penicillins; history of severe allergy. Warnings: Risk of anaphylaxis; monitor for rash; adjust dose in renal impairment. Dosage & Administration: - Adults: 500 mg every 8 hours. - Renal impairment: dose adjustment required based on creatinine clearance. Adverse Reactions: - Common: nausea, diarrhea, rash. - Serious: anaphylaxis, C. difficile-associated diarrhea (rare). CLINICAL OVERVIEW (SYNTHETIC) Clinical Summary: Efficacy shown in randomized controlled trials for susceptible organisms. Non-inferiority demonstrated versus comparator antibiotics in mild-to-moderate infections. Drug Interactions: - Probenecid increases amoxycillin levels by decreasing renal clearance. - Oral anticoagulants: monitor INR; may increase bleeding risk. Storage & Stability: Store below 25°C. Protect from moisture. Shelf life: 24 months. Quality Attributes: Assay: 95.0% to 105.0% of label claim. Dissolution: NLT 80% in 45 minutes (Q). MANUFACTURING & CMC (SYNTHETIC) Manufacturing Process: Blending -> Encapsulation -> In-process checks -> Packaging. Critical process parameters: blend uniformity, capsule fill weight, moisture control. Specifications: - Identification: conforms to reference standard. - Related substances: within limits. - Microbial limits: complies with pharmacopeial requirements. Packaging: Alu-Alu blister packs; carton labeling includes batch number and expiry date.",
"Identification: conforms to reference standard. - Related substances: within limits. - Microbial limits: complies with pharmacopeial requirements. Packaging: Alu-Alu blister packs; carton labeling includes batch number and expiry date.",
"Identification: conforms to reference standard. - Related substances: within limits. - Microbial limits: complies with pharmacopeial requirements. Packaging: Alu-Alu blister packs; carton labeling includes batch number and expiry date."
]
embeddings = model.encode(sentences)
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [4, 4]This is a sentence-transformers model finetuned from sentence-transformers/all-mpnet-base-v2. It maps sentences & paragraphs to a 768-dimensional dense vector space and can be used for retrieval.
SentenceTransformer(
(0): Transformer({'transformer_task': 'feature-extraction', 'modality_config': {'text': {'method': 'forward', 'method_output_name': 'last_hidden_state'}}, 'module_output_name': 'token_embeddings', 'architecture': 'MPNetModel'})
(1): Pooling({'embedding_dimension': 768, 'pooling_mode': 'mean', 'include_prompt': True})
(2): Normalize({})
)
First install the Sentence Transformers library:
pip install -U sentence-transformers
Then you can load this model and run inference.
from sentence_transformers import SentenceTransformer
# Download from the 🤗 Hub
model = SentenceTransformer("shashrao54/embedding-finetuning-model")
# Run inference
sentences = [
'Explain conforms in this document.',
'Identification: conforms to reference standard. - Related substances: within limits. - Microbial limits: complies with pharmacopeial requirements. Packaging: Alu-Alu blister packs; carton labeling includes batch number and expiry date.',
'Identification: conforms to reference standard. - Related substances: within limits. - Microbial limits: complies with pharmacopeial requirements. Packaging: Alu-Alu blister packs; carton labeling includes batch number and expiry date.',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 768]
# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities)
# tensor([[1.0000, 0.2568, 0.2568],
# [0.2568, 1.0000, 1.0000],
# [0.2568, 1.0000, 1.0000]])
anchor and positive| anchor | positive | |
|---|---|---|
| type | string | string |
| modality | text | text |
| details |
|
|
| anchor | positive |
|---|---|
Explain amoxycillin in this document. |
PHARMA PRODUCT DOSSIER (SYNTHETIC) Product: Amoxycillin Capsules 500 mg Indication: Treatment of bacterial infections (upper respiratory tract, urinary tract). Mechanism of Action: Beta-lactam antibiotic; inhibits bacterial cell wall synthesis. Contraindications: Hypersensitivity to penicillins; history of severe allergy. Warnings: Risk of anaphylaxis; monitor for rash; adjust dose in renal impairment. Dosage & Administration: - Adults: 500 mg every 8 hours. - Renal impairment: dose adjustment required based on creatinine clearance. Adverse Reactions: - Common: nausea, diarrhea, rash. - Serious: anaphylaxis, C. difficile-associated diarrhea (rare). CLINICAL OVERVIEW (SYNTHETIC) Clinical Summary: Efficacy shown in randomized controlled trials for susceptible organisms. Non-inferiority demonstrated versus comparator antibiotics in mild-to-moderate infections. Drug Interactions: - Probenecid increases amoxycillin levels by decreasing renal clearance. - Oral anticoagulants: monitor INR; ma... |
Explain renal in this document. |
PHARMA PRODUCT DOSSIER (SYNTHETIC) Product: Amoxycillin Capsules 500 mg Indication: Treatment of bacterial infections (upper respiratory tract, urinary tract). Mechanism of Action: Beta-lactam antibiotic; inhibits bacterial cell wall synthesis. Contraindications: Hypersensitivity to penicillins; history of severe allergy. Warnings: Risk of anaphylaxis; monitor for rash; adjust dose in renal impairment. Dosage & Administration: - Adults: 500 mg every 8 hours. - Renal impairment: dose adjustment required based on creatinine clearance. Adverse Reactions: - Common: nausea, diarrhea, rash. - Serious: anaphylaxis, C. difficile-associated diarrhea (rare). CLINICAL OVERVIEW (SYNTHETIC) Clinical Summary: Efficacy shown in randomized controlled trials for susceptible organisms. Non-inferiority demonstrated versus comparator antibiotics in mild-to-moderate infections. Drug Interactions: - Probenecid increases amoxycillin levels by decreasing renal clearance. - Oral anticoagulants: monitor INR; ma... |
What are the key points about renal? |
PHARMA PRODUCT DOSSIER (SYNTHETIC) Product: Amoxycillin Capsules 500 mg Indication: Treatment of bacterial infections (upper respiratory tract, urinary tract). Mechanism of Action: Beta-lactam antibiotic; inhibits bacterial cell wall synthesis. Contraindications: Hypersensitivity to penicillins; history of severe allergy. Warnings: Risk of anaphylaxis; monitor for rash; adjust dose in renal impairment. Dosage & Administration: - Adults: 500 mg every 8 hours. - Renal impairment: dose adjustment required based on creatinine clearance. Adverse Reactions: - Common: nausea, diarrhea, rash. - Serious: anaphylaxis, C. difficile-associated diarrhea (rare). CLINICAL OVERVIEW (SYNTHETIC) Clinical Summary: Efficacy shown in randomized controlled trials for susceptible organisms. Non-inferiority demonstrated versus comparator antibiotics in mild-to-moderate infections. Drug Interactions: - Probenecid increases amoxycillin levels by decreasing renal clearance. - Oral anticoagulants: monitor INR; ma... |
MultipleNegativesRankingLoss with these parameters:{
"scale": 20.0,
"similarity_fct": "cos_sim",
"gather_across_devices": false,
"directions": [
"query_to_doc"
],
"partition_mode": "joint",
"hardness_mode": null,
"hardness_strength": 0.0
}
learning_rate: 2e-05warmup_steps: 0.1fp16: Truebatch_sampler: no_duplicatesper_device_train_batch_size: 8num_train_epochs: 3max_steps: -1learning_rate: 2e-05lr_scheduler_type: linearlr_scheduler_kwargs: Nonewarmup_steps: 0.1optim: adamw_torch_fusedoptim_args: Noneweight_decay: 0.0adam_beta1: 0.9adam_beta2: 0.999adam_epsilon: 1e-08optim_target_modules: Nonegradient_accumulation_steps: 1average_tokens_across_devices: Truemax_grad_norm: 1.0label_smoothing_factor: 0.0bf16: Falsefp16: Truebf16_full_eval: Falsefp16_full_eval: Falsetf32: Nonegradient_checkpointing: Falsegradient_checkpointing_kwargs: Nonetorch_compile: Falsetorch_compile_backend: Nonetorch_compile_mode: Noneuse_liger_kernel: Falseliger_kernel_config: Noneuse_cache: Falseneftune_noise_alpha: Nonetorch_empty_cache_steps: Noneauto_find_batch_size: Falselog_on_each_node: Truelogging_nan_inf_filter: Trueinclude_num_input_tokens_seen: nolog_level: passivelog_level_replica: warningdisable_tqdm: Falseproject: huggingfacetrackio_space_id: Nonetrackio_bucket_id: Nonetrackio_static_space_id: Noneper_device_eval_batch_size: 8prediction_loss_only: Trueeval_on_start: Falseeval_do_concat_batches: Trueeval_use_gather_object: Falseeval_accumulation_steps: Noneinclude_for_metrics: []batch_eval_metrics: Falsesave_only_model: Falsesave_on_each_node: Falseenable_jit_checkpoint: Falsepush_to_hub: Falsehub_private_repo: Nonehub_model_id: Nonehub_strategy: every_savehub_always_push: Falsehub_revision: Noneload_best_model_at_end: Falseignore_data_skip: Falserestore_callback_states_from_checkpoint: Falsefull_determinism: Falseseed: 42data_seed: Noneuse_cpu: Falseaccelerator_config: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}parallelism_config: Nonedataloader_drop_last: Falsedataloader_num_workers: 0dataloader_pin_memory: Truedataloader_persistent_workers: Falsedataloader_prefetch_factor: Noneremove_unused_columns: Truelabel_names: Nonetrain_sampling_strategy: randomlength_column_name: lengthddp_find_unused_parameters: Noneddp_bucket_cap_mb: Noneddp_broadcast_buffers: Falseddp_static_graph: Noneddp_backend: Noneddp_timeout: 1800fsdp: Nonefsdp_config: Nonedeepspeed: Nonedebug: []skip_memory_metrics: Truedo_predict: Falseresume_from_checkpoint: Nonewarmup_ratio: Nonelocal_rank: -1prompts: Nonebatch_sampler: no_duplicatesmulti_dataset_batch_sampler: proportionalrouter_mapping: {}learning_rate_mapping: {}@inproceedings{reimers-2019-sentence-bert,
title = "Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks",
author = "Reimers, Nils and Gurevych, Iryna",
booktitle = "Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing",
month = "11",
year = "2019",
publisher = "Association for Computational Linguistics",
url = "https://arxiv.org/abs/1908.10084",
}
@misc{oord2019representationlearningcontrastivepredictive,
title={Representation Learning with Contrastive Predictive Coding},
author={Aaron van den Oord and Yazhe Li and Oriol Vinyals},
year={2019},
eprint={1807.03748},
archivePrefix={arXiv},
primaryClass={cs.LG},
url={https://arxiv.org/abs/1807.03748},
}
Base model
sentence-transformers/all-mpnet-base-v2