README.md

metadata

license: cc-by-nc-sa-4.0
tags:
  - medical-imaging
  - mri
  - segmentation
  - neuroscience
  - unetr

DOMINO — Whole-Head MRI Segmentation

DOMINO is a UNETR-based model for automated whole-head MRI segmentation into 12 tissue classes, developed by the SMILE Lab.

Variants

• domino_native.pth — operates in native MRI space
• domino_fs.pth — operates in FreeSurfer conformed space (256³ @ 1mm isotropic)

Tissue Classes

See labels.json for the full 12-class label map.

Usage

Install the CROWN CLI and download this model:

pip install crown-cli
crown models download domino-native
crown segment input.nii.gz --model domino-native

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Citation @misc{stolte2022dominodomainawaremodelcalibration, title={DOMINO: Domain-aware Model Calibration in Medical Image Segmentation}, author={Skylar E. Stolte and Kyle Volle and Aprinda Indahlastari and Alejandro Albizu and Adam J. Woods and Kevin Brink and Matthew Hale and Ruogu Fang}, year={2022}, eprint={2209.06077}, archivePrefix={arXiv}, primaryClass={eess.IV}, url={https://arxiv.org/abs/2209.06077}, }

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Terms By downloading these weights you agree to use them for non-commercial research purposes only. Redistribution of the weights is not permitted.

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