Spaces:
Sleeping
Sleeping
File size: 8,968 Bytes
4f56e85 b383602 4f56e85 b383602 48b3884 b383602 4f56e85 48b3884 b383602 48b3884 4f56e85 b383602 48b3884 b383602 48b3884 b383602 48b3884 b383602 48b3884 4f56e85 48b3884 4f56e85 48b3884 b383602 48b3884 4f56e85 48b3884 b383602 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 b383602 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 4f56e85 48b3884 b383602 48b3884 b383602 4f56e85 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 |
# app.py (Final Version for Deployment)
import gradio as gr
from pathlib import Path
from huggingface_hub import snapshot_download
import asyncio
import os
from app.prediction import PredictionPipeline
from app.database import add_patient_record, get_all_records
# --- Initialization ---
prediction_pipeline = PredictionPipeline()
HF_DATASET_REPO = "ALYYAN/chest-xray-pneumonia-samples"
try:
SAMPLE_IMAGE_DIR = Path(snapshot_download(repo_id=HF_DATASET_REPO, repo_type="dataset"))
# The value for a Gallery should be a list of file paths
SAMPLE_IMAGES = [str(p) for p in list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg'))]
except Exception as e:
print(f"Could not download sample images: {e}")
SAMPLE_IMAGES = []
# --- Core Logic (Async Functions) ---
async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
if not is_sample and (not patient_name or patient_age is None):
raise gr.Error("Patient Name and Age are required.")
if not image_list:
raise gr.Error("At least one image is required.")
result = prediction_pipeline.predict(image_list)
if "error" in result:
raise gr.Error(result["error"])
final_pred = result["final_prediction"]
final_conf = result["final_confidence"]
if not is_sample:
await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}
confidences[final_pred] = final_conf
confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
# Return updates for each component individually
return (
gr.update(visible=False), # uploader_column
gr.update(visible=True), # results_column
gr.update(value=result["watermarked_images"]), # result_images
gr.update(value=confidences) # result_label
)
async def refresh_history_table():
records = await get_all_records()
data_for_df = []
if records:
data_for_df = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records]
return gr.update(value=data_for_df)
# --- Gradio UI Definition ---
css = """
/* --- Professional Dark Theme & Fonts --- */
:root { --primary-hue: 220 !important; --secondary-hue: 210 !important; --neutral-hue: 210 !important; --body-background-fill: #111827 !important; --block-background-fill: #1F2937 !important; --block-border-width: 1px !important; --border-color-accent: #374151 !important; --background-fill-secondary: #1F2937 !important;}
/* --- Header & Title Styling --- */
#app_header { text-align: center; }
#app_title { font-size: 2.8rem !important; font-weight: 700 !important; color: #FFFFFF !important; padding-top: 1rem; }
#app_subtitle { font-size: 1.2rem !important; color: #9CA3AF !important; margin-bottom: 2rem; }
/* --- Layout, Spacing, and Component Styling --- */
#main_container { gap: 2rem; }
#results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
#bottom_controls { max-width: 600px; margin: 2.5rem auto 1rem auto; }
#bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
"""
with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
with gr.Column() as main_app:
with gr.Column(elem_id="app_header"):
gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
with gr.Row(elem_id="main_container"):
with gr.Column(scale=1) as uploader_column:
gr.Markdown("### Upload Patient X-Rays")
image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
with gr.Column(scale=2, visible=False) as results_column:
gr.Markdown("### Analysis Results")
result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
start_over_btn = gr.Button("Start New Analysis", variant="secondary")
with gr.Group(visible=False) as patient_info_modal:
gr.Markdown("## Enter Patient Details", elem_classes="text-center")
patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
patient_age_modal = gr.Number(label="Patient Age", minimum=0, maximum=120, step=1)
with gr.Row():
submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
cancel_btn = gr.Button("Cancel", variant="stop")
with gr.Column(elem_id="bottom_controls"):
with gr.Accordion("About this Tool", open=False):
gr.Markdown(
"""
### MLOps-Powered Pneumonia Detection
This application demonstrates a complete, end-to-end MLOps pipeline for medical image classification...
(Your professional description here)
---
**Project Team:** Alyyan Ahmed & Munim Akbar
"""
)
with gr.Row():
samples_btn = gr.Button("Try Sample Images")
history_btn = gr.Button("View Patient History")
with gr.Column(visible=False) as history_page:
gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
with gr.Row():
back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
refresh_history_btn = gr.Button("Refresh History")
history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
with gr.Column(visible=False) as samples_page:
gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
gr.Markdown("Click an image to run an anonymous analysis.")
back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
# FIX: The value for a gallery is a list of file paths.
sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400)
# --- Event Handling Logic ---
def show_patient_info(files):
return gr.update(visible=True) if files else gr.update(visible=False)
image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
async def submit_and_hide_modal(name, age, files):
analysis_results = await process_analysis(name, age, files)
# Unpack the list of updates and add the modal update
return [*analysis_results, gr.update(visible=False)]
submit_analysis_btn.click(
fn=submit_and_hide_modal,
inputs=[patient_name_modal, patient_age_modal, image_input],
outputs=[uploader_column, results_column, result_images, result_label, patient_info_modal]
)
cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
async def handle_sample_click(evt: gr.SelectData):
analysis_results = await process_analysis("Sample User", 0, [evt.value], is_sample=True)
return [
gr.update(visible=True), # main_app
gr.update(visible=False), # samples_page
*analysis_results
]
sample_gallery.select(handle_sample_click, None, [main_app, samples_page, uploader_column, results_column, result_images, result_label])
all_pages = [main_app, history_page, samples_page]
async def show_history_page_and_refresh():
records_update = await refresh_history_table()
return [
gr.update(visible=False),
gr.update(visible=True),
gr.update(visible=False),
records_update
]
def show_samples_page():
return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
def show_main_page():
return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
samples_btn.click(fn=show_samples_page, outputs=all_pages)
back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
back_to_main_btn_samp.click(fn=show_main_page, outputs=all_pages)
refresh_history_btn.click(fn=refresh_history_table, outputs=history_df)
demo.load(fn=refresh_history_table, outputs=history_df)
# --- Launch the App ---
if __name__ == "__main__":
demo.launch()
|