config/continue_config_example.json

{
  "models": [
    {
      "title": "Claude 3.5 Sonnet",
      "provider": "anthropic",
      "model": "claude-3-5-sonnet-20241022",
      "apiKey": "your-anthropic-api-key-here"
    }
  ],
  "experimental": {
    "modelContextProtocolServers": [
      {
        "name": "openproblems-spatial",
        "transport": {
          "type": "stdio",
          "command": "python",
          "args": ["-m", "mcp_server.main"],
          "cwd": "/home/obi/SpatialAI_MCP"
        }
      }
    ]
  },
  "docs": [
    {
      "title": "Nextflow Documentation",
      "startUrl": "https://www.nextflow.io/docs/latest/"
    },
    {
      "title": "Viash Documentation",
      "startUrl": "https://viash.io/docs/"
    },
    {
      "title": "OpenProblems GitHub",
      "startUrl": "https://github.com/openproblems-bio/openproblems-v2"
    },
    {
      "title": "Spatial Transcriptomics Task",
      "startUrl": "https://github.com/openproblems-bio/task_spatial_decomposition"
    },
    {
      "title": "Scanpy Documentation",
      "startUrl": "https://scanpy.readthedocs.io/"
    },
    {
      "title": "Squidpy Documentation",
      "startUrl": "https://squidpy.readthedocs.io/"
    }
  ],
  "contextProviders": [
    {
      "name": "codebase",
      "params": {}
    },
    {
      "name": "folder",
      "params": {}
    }
  ]
}