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Amol Kaushik commited on
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4df89bc
1
Parent(s): 0e7815e
classifiers garbage training issue resolved
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- A13/A13_DeepLearning_Report.ipynb +2 -2
- A13/classification_problems/prepare_classification_data_v2.py +257 -0
- A13/classification_problems/prepared_data/A_CNN_test_X.npy +2 -2
- A13/classification_problems/prepared_data/A_CNN_test_filenames.npy +1 -1
- A13/classification_problems/prepared_data/A_CNN_test_y.npy +2 -2
- A13/classification_problems/prepared_data/A_CNN_train_X.npy +2 -2
- A13/classification_problems/prepared_data/A_CNN_train_aug_X.npy +2 -2
- A13/classification_problems/prepared_data/A_CNN_train_aug_filenames.npy +1 -1
- A13/classification_problems/prepared_data/A_CNN_train_aug_y.npy +2 -2
- A13/classification_problems/prepared_data/A_CNN_train_y.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_test_X.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_test_filenames.npy +1 -1
- A13/classification_problems/prepared_data/A_Dense_test_y.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_train_X.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_train_aug_X.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_train_aug_filenames.npy +1 -1
- A13/classification_problems/prepared_data/A_Dense_train_aug_y.npy +2 -2
- A13/classification_problems/prepared_data/A_Dense_train_y.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_test_X.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_test_filenames.npy +1 -1
- A13/classification_problems/prepared_data/B_CNN_test_y.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_train_X.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_train_aug_X.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_train_aug_filenames.npy +1 -1
- A13/classification_problems/prepared_data/B_CNN_train_aug_y.npy +2 -2
- A13/classification_problems/prepared_data/B_CNN_train_y.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_test_X.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_test_filenames.npy +1 -1
- A13/classification_problems/prepared_data/B_Dense_test_y.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_train_X.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_train_aug_X.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_train_aug_filenames.npy +1 -1
- A13/classification_problems/prepared_data/B_Dense_train_aug_y.npy +2 -2
- A13/classification_problems/prepared_data/B_Dense_train_y.npy +2 -2
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_aug_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_aug_filenames.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_aug_y.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_filenames.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_test_y.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_aug_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_aug_filenames.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_aug_y.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_filenames.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_CNN_train_y.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_Dense_test_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_Dense_test_aug_X.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_Dense_test_aug_filenames.npy +3 -0
- A13/classification_problems/prepared_data_broken_backup/A_Dense_test_aug_y.npy +3 -0
A13/A13_DeepLearning_Report.ipynb
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version https://git-lfs.github.com/spec/v1
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size
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version https://git-lfs.github.com/spec/v1
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size 105227
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A13/classification_problems/prepare_classification_data_v2.py
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#!/usr/bin/env python3
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"""Rebuild the prepared classification arrays from clean raw Kinect data.
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Replaces the broken ``prepare_classification_problems.py`` whose
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"first 39 features per frame" slice silently captured 3 metadata columns
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(FrameNo, timestamp, padding-zero) from the 102-feature processed format,
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producing 1.27e9-magnitude garbage in "joint 0" and shifting all later
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joints by one axis. That made the BatchNorm-first-layer model learn on
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fantasy features and always predict "good" when the app fed real
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coordinate-scale inputs.
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This v2 reads the original 40-column raw Kinect CSVs directly
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(``A13/kinect_good_vs_bad_not_preprocessed/``) and builds clean
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(10, 13, 3) sequences with real meter-scale joint coordinates.
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Outputs to ``A13/classification_problems/prepared_data/`` the exact
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file set expected by ``A13/dl_models/data_loader.py``:
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{A,B}_{Dense,CNN}_{train,train_aug,test}_{X,y}.npy
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{A,B}_{Dense,CNN}_{train_aug,test}_filenames.npy
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Problem A = 3D (Kinect, 13 joints x 3 dims).
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Problem B = 2D (x,y projection of the same Kinect data; the repo
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does not contain PoseNet recordings for the Good-vs-Bad clips, so we
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project rather than guess. The architecture and CV protocol are
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unchanged; only the input channel count differs).
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Augmentations applied to the training set only (test never augmented):
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_mirror : negate x coordinates
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_rotate_pos : +10 deg around vertical (Y) axis
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_rotate_neg : -10 deg around vertical (Y) axis
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_stretch : isotropic scale by 1.05
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Run::
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python -m A13.classification_problems.prepare_classification_data_v2
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"""
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from __future__ import annotations
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from pathlib import Path
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import sys
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import numpy as np
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import pandas as pd
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from sklearn.model_selection import train_test_split
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# --------------------------------------------------------------------- paths
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THIS_DIR = Path(__file__).resolve().parent
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RAW_DIR = THIS_DIR.parent / "kinect_good_vs_bad_not_preprocessed"
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OUT_DIR = THIS_DIR / "prepared_data"
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# --------------------------------------------------------------------- consts
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FRAMES = 10
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JOINTS = 13 # head + 6 upper-body + 6 lower-body, matches the CSV schema
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DIMS = 3
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RANDOM_STATE = 42
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TEST_SIZE = 0.2
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ROT_DEG = 10.0
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STRETCH = 1.05
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| 62 |
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| 63 |
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def log(msg: str) -> None:
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print(msg, flush=True)
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| 66 |
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| 67 |
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# ------------------------------------------------------------------ labeling
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| 68 |
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def label_from_filename(stem: str) -> int:
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"""G* or A1 -> 1 (good); W* -> 0 (bad). Matches the original spec."""
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| 70 |
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if stem == "A1" or stem.startswith("G"):
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return 1
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| 72 |
+
if stem.startswith("W"):
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return 0
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| 74 |
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raise ValueError(f"Unknown label for {stem!r}")
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| 75 |
+
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| 76 |
+
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| 77 |
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# ----------------------------------------------------------------- load clip
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| 78 |
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def load_clip(csv_path: Path) -> np.ndarray:
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"""Return (FRAMES, JOINTS, DIMS) float32 array of joint coords."""
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| 80 |
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df = pd.read_csv(csv_path)
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df.columns = [c.strip() for c in df.columns]
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| 82 |
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# Drop FrameNo; the remaining 39 cols are 13 joints x (x, y, z).
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if "FrameNo" not in df.columns:
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raise ValueError(f"{csv_path.name}: expected a FrameNo column")
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| 85 |
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coords = df.drop(columns=["FrameNo"]).values.astype("float32")
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| 86 |
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n_rows, n_cols = coords.shape
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| 87 |
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if n_cols != JOINTS * DIMS:
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| 88 |
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raise ValueError(
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f"{csv_path.name}: expected {JOINTS * DIMS} coord cols, got {n_cols}"
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)
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| 91 |
+
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| 92 |
+
# Equidistant subsample to FRAMES; if shorter, pad with last frame.
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| 93 |
+
if n_rows >= FRAMES:
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| 94 |
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idx = np.linspace(0, n_rows - 1, FRAMES, dtype=int)
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| 95 |
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seq = coords[idx]
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| 96 |
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else:
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| 97 |
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seq = np.zeros((FRAMES, n_cols), dtype="float32")
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| 98 |
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seq[:n_rows] = coords
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| 99 |
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if n_rows > 0:
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seq[n_rows:] = coords[-1]
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+
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| 102 |
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return seq.reshape(FRAMES, JOINTS, DIMS)
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| 103 |
+
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| 104 |
+
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| 105 |
+
# ------------------------------------------------------------- augmentations
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| 106 |
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def aug_mirror(seq: np.ndarray) -> np.ndarray:
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| 107 |
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out = seq.copy()
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| 108 |
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out[..., 0] = -out[..., 0]
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| 109 |
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return out
|
| 110 |
+
|
| 111 |
+
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| 112 |
+
def _rotate_y(seq: np.ndarray, deg: float) -> np.ndarray:
|
| 113 |
+
r = np.deg2rad(deg)
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| 114 |
+
c, s = np.cos(r), np.sin(r)
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| 115 |
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out = seq.copy()
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| 116 |
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x = seq[..., 0]
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| 117 |
+
z = seq[..., 2]
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| 118 |
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out[..., 0] = c * x + s * z
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| 119 |
+
out[..., 2] = -s * x + c * z
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| 120 |
+
return out
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| 121 |
+
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| 122 |
+
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| 123 |
+
def aug_rotate_pos(seq: np.ndarray) -> np.ndarray:
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| 124 |
+
return _rotate_y(seq, +ROT_DEG)
|
| 125 |
+
|
| 126 |
+
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| 127 |
+
def aug_rotate_neg(seq: np.ndarray) -> np.ndarray:
|
| 128 |
+
return _rotate_y(seq, -ROT_DEG)
|
| 129 |
+
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| 130 |
+
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| 131 |
+
def aug_stretch(seq: np.ndarray) -> np.ndarray:
|
| 132 |
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return seq * STRETCH
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| 133 |
+
|
| 134 |
+
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| 135 |
+
AUGS = [
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| 136 |
+
("_mirror", aug_mirror),
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| 137 |
+
("_rotate_pos", aug_rotate_pos),
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| 138 |
+
("_rotate_neg", aug_rotate_neg),
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| 139 |
+
("_stretch", aug_stretch),
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| 140 |
+
]
|
| 141 |
+
|
| 142 |
+
|
| 143 |
+
# ----------------------------------------------------------------- pipeline
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| 144 |
+
def collect_clips() -> tuple[np.ndarray, np.ndarray, np.ndarray]:
|
| 145 |
+
files = sorted(p for p in RAW_DIR.glob("*.csv"))
|
| 146 |
+
if not files:
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| 147 |
+
raise FileNotFoundError(f"No CSVs in {RAW_DIR}")
|
| 148 |
+
log(f"[1] reading {len(files)} clips from {RAW_DIR}")
|
| 149 |
+
seqs, labels, names = [], [], []
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| 150 |
+
for i, p in enumerate(files):
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| 151 |
+
stem = p.stem
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| 152 |
+
try:
|
| 153 |
+
y = label_from_filename(stem)
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| 154 |
+
except ValueError as e:
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| 155 |
+
log(f" skip {stem}: {e}")
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| 156 |
+
continue
|
| 157 |
+
seq = load_clip(p)
|
| 158 |
+
seqs.append(seq)
|
| 159 |
+
labels.append(y)
|
| 160 |
+
names.append(stem)
|
| 161 |
+
if (i + 1) % 25 == 0:
|
| 162 |
+
log(f" loaded {i + 1}/{len(files)}")
|
| 163 |
+
X = np.stack(seqs).astype("float32") # (N, 10, 13, 3)
|
| 164 |
+
y = np.asarray(labels, dtype="int32") # (N,)
|
| 165 |
+
fn = np.asarray(names, dtype=object) # (N,)
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| 166 |
+
log(f" -> X {X.shape} y {y.shape} good={int(y.sum())} bad={int((y == 0).sum())}")
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| 167 |
+
log(f" coord scale: min={X.min():.3g} max={X.max():.3g} mean={X.mean():.3g}")
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| 168 |
+
return X, y, fn
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| 169 |
+
|
| 170 |
+
|
| 171 |
+
def split(X, y, fn):
|
| 172 |
+
log(f"[2] stratified split test_size={TEST_SIZE} random_state={RANDOM_STATE}")
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| 173 |
+
Xtr, Xte, ytr, yte, ftr, fte = train_test_split(
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| 174 |
+
X, y, fn, test_size=TEST_SIZE, random_state=RANDOM_STATE, stratify=y
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| 175 |
+
)
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| 176 |
+
log(f" train: {Xtr.shape} good={int(ytr.sum())}/{len(ytr)}")
|
| 177 |
+
log(f" test: {Xte.shape} good={int(yte.sum())}/{len(yte)}")
|
| 178 |
+
return Xtr, ytr, ftr, Xte, yte, fte
|
| 179 |
+
|
| 180 |
+
|
| 181 |
+
def augment(Xtr, ytr, ftr):
|
| 182 |
+
log(f"[3] augmenting train (originals + {len(AUGS)} variants each)")
|
| 183 |
+
X_all = [Xtr]
|
| 184 |
+
y_all = [ytr]
|
| 185 |
+
f_all = [ftr]
|
| 186 |
+
for suf, fn in AUGS:
|
| 187 |
+
X_all.append(np.stack([fn(s) for s in Xtr]))
|
| 188 |
+
y_all.append(ytr.copy())
|
| 189 |
+
f_all.append(np.asarray([f"{n}{suf}" for n in ftr], dtype=object))
|
| 190 |
+
X = np.concatenate(X_all, axis=0).astype("float32")
|
| 191 |
+
y = np.concatenate(y_all, axis=0).astype("int32")
|
| 192 |
+
f = np.concatenate(f_all, axis=0)
|
| 193 |
+
log(f" -> aug train: {X.shape} good={int(y.sum())}/{len(y)}")
|
| 194 |
+
return X, y, f
|
| 195 |
+
|
| 196 |
+
|
| 197 |
+
def save_problem(problem: str, dims_keep: int,
|
| 198 |
+
Xtr, ytr, ftr,
|
| 199 |
+
Xtr_aug, ytr_aug, ftr_aug,
|
| 200 |
+
Xte, yte, fte):
|
| 201 |
+
"""Slice last axis to ``dims_keep`` and write Dense+CNN variants."""
|
| 202 |
+
def proj(X):
|
| 203 |
+
return X[..., :dims_keep]
|
| 204 |
+
|
| 205 |
+
Xtr_p = proj(Xtr)
|
| 206 |
+
Xtr_aug_p = proj(Xtr_aug)
|
| 207 |
+
Xte_p = proj(Xte)
|
| 208 |
+
|
| 209 |
+
# Dense = flatten
|
| 210 |
+
n_feat = FRAMES * JOINTS * dims_keep
|
| 211 |
+
pairs_dense = {
|
| 212 |
+
f"{problem}_Dense_train_X": Xtr_p.reshape(len(Xtr_p), n_feat),
|
| 213 |
+
f"{problem}_Dense_train_y": ytr,
|
| 214 |
+
f"{problem}_Dense_train_aug_X": Xtr_aug_p.reshape(len(Xtr_aug_p), n_feat),
|
| 215 |
+
f"{problem}_Dense_train_aug_y": ytr_aug,
|
| 216 |
+
f"{problem}_Dense_train_aug_filenames": ftr_aug,
|
| 217 |
+
f"{problem}_Dense_test_X": Xte_p.reshape(len(Xte_p), n_feat),
|
| 218 |
+
f"{problem}_Dense_test_y": yte,
|
| 219 |
+
f"{problem}_Dense_test_filenames": fte,
|
| 220 |
+
}
|
| 221 |
+
# CNN = keep (frames, joints, dims)
|
| 222 |
+
pairs_cnn = {
|
| 223 |
+
f"{problem}_CNN_train_X": Xtr_p,
|
| 224 |
+
f"{problem}_CNN_train_y": ytr,
|
| 225 |
+
f"{problem}_CNN_train_aug_X": Xtr_aug_p,
|
| 226 |
+
f"{problem}_CNN_train_aug_y": ytr_aug,
|
| 227 |
+
f"{problem}_CNN_train_aug_filenames": ftr_aug,
|
| 228 |
+
f"{problem}_CNN_test_X": Xte_p,
|
| 229 |
+
f"{problem}_CNN_test_y": yte,
|
| 230 |
+
f"{problem}_CNN_test_filenames": fte,
|
| 231 |
+
}
|
| 232 |
+
OUT_DIR.mkdir(parents=True, exist_ok=True)
|
| 233 |
+
for name, arr in {**pairs_dense, **pairs_cnn}.items():
|
| 234 |
+
np.save(OUT_DIR / f"{name}.npy", arr)
|
| 235 |
+
log(
|
| 236 |
+
f" wrote 16 files for problem {problem} "
|
| 237 |
+
f"(Dense {n_feat}-feat, CNN {(FRAMES, JOINTS, dims_keep)})"
|
| 238 |
+
)
|
| 239 |
+
|
| 240 |
+
|
| 241 |
+
def main():
|
| 242 |
+
log("=" * 70)
|
| 243 |
+
log("prepare_classification_data_v2: clean rebuild from raw Kinect CSVs")
|
| 244 |
+
log("=" * 70)
|
| 245 |
+
X, y, fn = collect_clips()
|
| 246 |
+
Xtr, ytr, ftr, Xte, yte, fte = split(X, y, fn)
|
| 247 |
+
Xtr_aug, ytr_aug, ftr_aug = augment(Xtr, ytr, ftr)
|
| 248 |
+
|
| 249 |
+
log("[4] writing Problem A (3D Kinect, 13x3)")
|
| 250 |
+
save_problem("A", 3, Xtr, ytr, ftr, Xtr_aug, ytr_aug, ftr_aug, Xte, yte, fte)
|
| 251 |
+
log("[5] writing Problem B (2D x,y projection of Kinect, 13x2)")
|
| 252 |
+
save_problem("B", 2, Xtr, ytr, ftr, Xtr_aug, ytr_aug, ftr_aug, Xte, yte, fte)
|
| 253 |
+
log(f"[6] done. output dir: {OUT_DIR}")
|
| 254 |
+
|
| 255 |
+
|
| 256 |
+
if __name__ == "__main__":
|
| 257 |
+
sys.exit(main() or 0)
|
A13/classification_problems/prepared_data/A_CNN_test_X.npy
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