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add initial documentation for DeepCritical project, including architecture overview, design patterns, and user guides
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| # DeepCritical Documentation | |
| ## Medical Drug Repurposing Research Agent | |
| AI-powered deep research system for accelerating drug repurposing discovery. | |
| --- | |
| ## Quick Links | |
| ### Architecture | |
| - **[Overview](architecture/overview.md)** - Project overview, use case, architecture, timeline | |
| - **[Design Patterns](architecture/design-patterns.md)** - 13 technical patterns, judge prompts, data models | |
| ### Guides | |
| - Setup Guide (coming soon) | |
| - User Guide (coming soon) | |
| ### Development | |
| - Contributing (coming soon) | |
| - API Reference (coming soon) | |
| --- | |
| ## What We're Building | |
| **One-liner**: AI agent that searches medical literature to find existing drugs that might treat new diseases. | |
| **Example Query**: | |
| > "What existing drugs might help treat long COVID fatigue?" | |
| **Output**: Research report with drug candidates, mechanisms, evidence quality, and citations. | |
| --- | |
| ## Architecture Summary | |
| ``` | |
| User Question → Research Agent (Orchestrator) | |
| ↓ | |
| Search Loop: | |
| → Tools (PubMed, Web Search) | |
| → Judge (Quality + Budget) | |
| → Repeat or Synthesize | |
| ↓ | |
| Research Report with Citations | |
| ``` | |
| --- | |
| ## Hackathon Tracks | |
| | Track | Status | Key Feature | | |
| |-------|--------|-------------| | |
| | **Gradio** | ✅ Planned | Streaming UI with progress | | |
| | **MCP** | ✅ Planned | PubMed as MCP server | | |
| | **Modal** | 🔄 Stretch | GPU inference option | | |
| --- | |
| ## Team | |
| - Physician (medical domain expert) ✅ | |
| - Software engineers ✅ | |
| - AI architecture validated by multiple agents ✅ | |
| --- | |
| ## Status | |
| **Architecture Review**: PASSED (98-99/100) | |
| **Specs**: IRONCLAD | |
| **Next**: Implementation | |