fix(config): increase max iterations to 10

feat(search): implement ClinicalTrials.gov filtering (Phase 03)

feat(search): implement PubMed query preprocessing (Phase 02)

refactor(tools): replace BioRxiv with Europe PMC (Phase 01)

fix: exclude reference_repos from mypy and cleanup

refactor: enhance Gradio UI for improved user experience

fix: simplify Gradio UI to fit single viewport

Merge branch 'main' into dev

feat: HFInferenceJudgeHandler - Free AI analysis for hackathon judges (#36)

chore: remove resolved bug documentation

fix: pin agent-framework-core and remove resolved bug doc

fix: address CodeRabbit feedback and P0 blockers

docs: add P0 blockers documentation for Magentic mode implementation

feat: implement Magentic ChatAgent pattern with semantic state management

feat: add documentation for Magentic mode bug and implementation spec

feat: implement HFInferenceJudgeHandler for free-tier AI analysis

fix: wire EmbeddingService to simple orchestrator + improve search quality

fix: disable ssr_mode to resolve intermittent gradio hydration issues

docs: add bug report for intermittent gradio loading issues

chore: trigger HF rebuild

fix: remove header: mini from README to resolve desktop overlay issues

Merge pull request #35 from The-Obstacle-Is-The-Way/fix/gradio-ui-final

chore: update .env.example and config.py for LLM and agent settings

fix: resolve Gradio UI cutoff by removing fill_height=True and restructuring layout

Merge pull request #34 from The-Obstacle-Is-The-Way/dev

fix: require Gradio 6.0+ for css in launch() API

fix: correct UI layout ordering - title at top

fix: move title/description into ChatInterface for proper HF Spaces layout

Merge pull request #33 from The-Obstacle-Is-The-Way/fix/gradio-ui-scrolling

fix: upgrade Gradio SDK to 6.0.1 and add fill_height for HF Spaces UI fix

Merge pull request #30 from The-Obstacle-Is-The-Way/chore/env-cleanup-model-upgrade

Merge pull request #29 from The-Obstacle-Is-The-Way/claude/debug-gradio-mock-data-01MDfoUPcbfZ7FLootfhe8zs

fix: address CodeRabbit review feedback

chore: clean up env config and upgrade model defaults

fix: use config settings for model names instead of hardcoded values

feat: add demo mode warnings and BYOK (Bring Your Own Key) support

Merge pull request #28 from The-Obstacle-Is-The-Way/fix/gradio-upgrade-cleanup

fix: upgrade Gradio to 5.32.0+ for MCP server support

fix: remove duplicate typer dependency per CodeRabbit review

feat: add smoke tests and fix Gradio 6.x compatibility

fix: Gradio examples format for additional_inputs

chore: update README to specify Python version as 3.11 (#26)

fix: update requirements.txt for HuggingFace Spaces build

chore: include coverage in make check for better DevEx

chore: improve DevEx and clean up obsolete docs (#25)

Merge pull request #24 from The-Obstacle-Is-The-Way/fix/research-report-references-default

style: add pytest.mark.unit to test_models (CodeRabbit)

fix: make ResearchReport.references optional with default

Merge pull request #22 from The-Obstacle-Is-The-Way/feat/phase14-demo-submission

docs: add Josephrp to team contributors