Spaces:
Sleeping
Sleeping
APPDOTPY(Updated)
#1
by ElMETRICO - opened
- README.md +7 -8
- app.py +90 -168
- find_threshold_recall.py +0 -79
- nhanes_sleep_extended_v2.csv +0 -0
- requirements.txt +6 -7
README.md
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---
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title: SleepGuardAI
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emoji:
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colorFrom:
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sdk:
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sdk_version:
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app_file: app.py
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pinned: false
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---
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AI-powered sleep risk screening system.
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---
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title: SleepGuardAI
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emoji: 👁
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colorFrom: gray
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colorTo: yellow
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sdk: gradio
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sdk_version: 6.4.0
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app_file: app.py
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pinned: false
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short_description: 'AI-based sleep risk screening system '
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---
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Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
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app.py
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import joblib
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import numpy as np
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import pandas as pd
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import
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#
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# These thresholds decide the UI label.
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# You can change them anytime.
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TH_LOW = 0.20 # below this => Low Risk
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TH_HIGH = 0.40 # above this => High Risk
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# between TH_LOW and TH_HIGH => Moderate Risk
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MODEL_PATH = "best_model_v2_calibrated.joblib"
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FEATURE_ORDER = [
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"Age",
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"Gender",
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"BMI",
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"BP_SYS",
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"BP_DIA",
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"Phys_Activity_Days",
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"DPQ_Score",
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"Smoking_Indicator",
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"Alcohol_Feature",
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"Diabetes_Indicator",
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"Cycle",
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]
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# =========================
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# HELPERS
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# =========================
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def label_from_probability(prob: float) -> str:
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"""3-level risk label based on thresholds."""
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if prob < TH_LOW:
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return "Low Risk"
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elif prob < TH_HIGH:
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return "Moderate Risk"
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else:
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return "High Risk"
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if lang == "বাংলা":
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"
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"
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"
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"
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"warning": "⚠️ এটি একটি স্ক্রিনিং টুল, মেডিকেল ডায়াগনসিস নয়। লক্ষণ থাকলে ডাক্তার দেখান।",
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"low": "কম ঝুঁকি",
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"mod": "মাঝারি ঝুঁকি",
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"high": "উচ্চ ঝুঁকি",
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}
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else:
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return
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"Age": float(age),
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"Gender":
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"BMI": float(bmi),
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"BP_SYS": float(bp_sys),
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"BP_DIA": float(bp_dia),
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"Phys_Activity_Days": float(phys_days),
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"DPQ_Score": float(dpq),
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"Smoking_Indicator":
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"Alcohol_Feature": float(alcohol),
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"Diabetes_Indicator":
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"Cycle":
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}
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df = pd.DataFrame([row])[FEATURE_ORDER]
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return df
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# =========================
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# UI
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# =========================
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st.set_page_config(page_title="SleepGuardAI", layout="wide")
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lang = st.radio("Language / ভাষা", ["English", "বাংলা"], horizontal=True)
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T = get_texts(lang)
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st.title(T["title"])
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st.caption(T["subtitle"])
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# Load model
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try:
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bundle = load_model()
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except FileNotFoundError:
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st.error(
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f"Model file not found: '{MODEL_PATH}'. Put it in the same folder as app.py."
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)
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st.stop()
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# We support two possible save formats:
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# 1) bundle is a dict with {"model":..., "calibrator":..., ...}
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# 2) bundle is directly a sklearn Pipeline/Calibrated model with predict_proba
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model = bundle.get("model") if isinstance(bundle, dict) and "model" in bundle else bundle
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calibrator = bundle.get("calibrator") if isinstance(bundle, dict) and "calibrator" in bundle else None
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colA, colB = st.columns(2)
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with colA:
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age = st.slider("Age / বয়স", 10, 90, 30)
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gender = st.selectbox("Gender", ["Male", "Female"])
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bmi = st.slider("BMI", 10.0, 50.0, 25.0, 0.1)
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bp_sys = st.slider("Systolic BP", 80, 220, 120)
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bp_dia = st.slider("Diastolic BP", 40, 140, 80)
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phys_days = st.slider("Physical Activity Days/Week", 0, 7, 3)
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with colB:
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st.markdown("### Optional (improves accuracy if known)")
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dpq = st.slider("DPQ Depression Score (0–27)", 0, 27, 5)
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smoking = st.selectbox("Smoking (1=Yes, 2=No)", [2, 1], index=0)
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diabetes = st.selectbox("Diabetes (1=Yes, 2=No)", [2, 1], index=0)
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alcohol = st.slider("Alcohol feature (proxy)", 0.0, 30.0, 2.0, 0.5)
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cycle = st.selectbox("NHANES Cycle", ["G", "H", "I", "J"])
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st.divider()
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if st.button(T["predict_btn"], use_container_width=True):
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X = build_feature_row(age, gender, bmi, bp_sys, bp_dia, phys_days, dpq, smoking, alcohol, diabetes, cycle)
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# Get probability
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# If you saved a separate calibrator, run model -> probs -> calibrator
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# Otherwise assume model already outputs calibrated proba.
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try:
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raw_proba = model.predict_proba(X)[:, 1]
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except Exception as e:
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st.error(f"Model could not compute predict_proba. Error: {e}")
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st.stop()
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if calibrator is not None:
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# calibrator usually expects 2D array
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prob = float(calibrator.predict(raw_proba.reshape(-1, 1))[0])
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else:
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prob = float(raw_proba[0])
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with st.expander("Show input feature row (for debugging/paper)"):
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st.dataframe(X)
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import joblib
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import pandas as pd
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import gradio as gr
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# ---------------- Load model bundle ----------------
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bundle = joblib.load("best_model_v2_calibrated.joblib")
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model = bundle["model"]
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threshold = float(bundle["threshold"])
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# ---------------- Output formatting ----------------
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def format_output(lang, label, proba):
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if lang == "বাংলা":
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risk_text = "উচ্চ ঝুঁকি" if label == "High Risk" else "কম ঝুঁকি"
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return (
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f"### ফলাফল: **{risk_text}**\n"
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f"- ঝুঁকির সম্ভাবনা (Probability): **{proba:.3f}**\n"
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f"- Threshold: **{threshold:.2f}**\n\n"
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"⚠️ এটি একটি **স্ক্রিনিং টুল**, চিকিৎসা নির্ণয় নয়। সমস্যা থাকলে ডাক্তারের পরামর্শ নিন।"
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)
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else:
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return (
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f"### Result: **{label}**\n"
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f"- Risk probability: **{proba:.3f}**\n"
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f"- Threshold: **{threshold:.2f}**\n\n"
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"⚠️ This is a **screening tool**, not a medical diagnosis. If you have symptoms, consult a clinician."
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)
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def web_speak_html(text, lang):
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voice_lang = "bn-BD" if lang == "বাংলা" else "en-US"
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safe = text.replace("`", "").replace("\\", "\\\\").replace("'", "\\'")
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return f"""
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<div style="display:flex;gap:10px;align-items:center;">
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<button onclick="(function(){{
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const msg = new SpeechSynthesisUtterance('{safe}');
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msg.lang = '{voice_lang}';
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window.speechSynthesis.cancel();
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window.speechSynthesis.speak(msg);
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}})()" style="padding:10px 14px;border-radius:10px;border:1px solid #ccc;cursor:pointer;">
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🔊 Speak / শোনান
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</button>
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<span style="opacity:0.7;">(Voice depends on browser installed voices)</span>
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</div>
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"""
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# ---------------- Prediction ----------------
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def predict(lang, age, gender, bmi, bp_sys, bp_dia, phys_days, dpq, smoking, alcohol, diabetes, cycle):
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sample = pd.DataFrame([{
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"Age": float(age),
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"Gender": gender,
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"BMI": float(bmi),
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"BP_SYS": float(bp_sys),
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"BP_DIA": float(bp_dia),
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"Phys_Activity_Days": float(phys_days),
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"DPQ_Score": float(dpq),
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"Smoking_Indicator": float(smoking),
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"Alcohol_Feature": float(alcohol),
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"Diabetes_Indicator": float(diabetes),
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"Cycle": cycle
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}])
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proba = float(model.predict_proba(sample)[:, 1][0])
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pred = int(proba >= threshold)
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label = "High Risk" if pred == 1 else "Low Risk"
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md = format_output(lang, label, proba)
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speak = web_speak_html(md, lang)
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return md, speak
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# ---------------- UI ----------------
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with gr.Blocks(title="SleepGuardAI – Sleep Risk Screening") as demo:
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gr.Markdown("# SleepGuardAI – Sleep Risk Screening (NHANES-based)")
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gr.Markdown("Fill the form → get risk score. Bilingual output + Speak button included.")
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lang = gr.Radio(["English", "বাংলা"], value="English", label="Language / ভাষা")
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with gr.Row():
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age = gr.Slider(10, 90, value=30, label="Age / বয়স")
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gender = gr.Dropdown(["Male", "Female"], value="Male", label="Gender")
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with gr.Row():
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bmi = gr.Slider(10, 50, value=25, label="BMI")
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bp_sys = gr.Slider(80, 220, value=120, label="Systolic BP")
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bp_dia = gr.Slider(40, 140, value=80, label="Diastolic BP")
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phys = gr.Slider(0, 7, value=3, step=1, label="Physical Activity Days/Week")
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gr.Markdown("### Optional (improves accuracy if known)")
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with gr.Row():
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dpq = gr.Slider(0, 27, value=0, step=1, label="DPQ Depression Score (0–27)")
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smoking = gr.Dropdown([1, 2], value=2, label="Smoking (1=Yes, 2=No)")
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diabetes = gr.Dropdown([1, 2], value=2, label="Diabetes (1=Yes, 2=No)")
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alcohol = gr.Slider(0, 30, value=0, step=1, label="Alcohol feature (proxy)")
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cycle = gr.Dropdown(["G", "H", "I", "J"], value="J", label="NHANES Cycle")
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btn = gr.Button("Predict / ফলাফল দেখুন")
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out_md = gr.Markdown()
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out_speak = gr.HTML()
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btn.click(
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predict,
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inputs=[lang, age, gender, bmi, bp_sys, bp_dia, phys, dpq, smoking, alcohol, diabetes, cycle],
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outputs=[out_md, out_speak]
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)
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demo.launch()
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find_threshold_recall.py
DELETED
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@@ -1,79 +0,0 @@
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-
import joblib
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import numpy as np
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-
import pandas as pd
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| 4 |
-
from sklearn.model_selection import train_test_split
|
| 5 |
-
from sklearn.metrics import recall_score, fbeta_score, roc_auc_score
|
| 6 |
-
|
| 7 |
-
MODEL_PATH = "best_model_v2_calibrated.joblib"
|
| 8 |
-
CSV_PATH = "nhanes_sleep_extended_v2.csv"
|
| 9 |
-
|
| 10 |
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TARGET = "Sleep_Risk"
|
| 11 |
-
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| 12 |
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FEATURES = [
|
| 13 |
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"Age",
|
| 14 |
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"Gender",
|
| 15 |
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"BMI",
|
| 16 |
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"BP_SYS",
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| 17 |
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"BP_DIA",
|
| 18 |
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"Phys_Activity_Days",
|
| 19 |
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"DPQ_Score",
|
| 20 |
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"Smoking_Indicator",
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| 21 |
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"Alcohol_Feature",
|
| 22 |
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"Diabetes_Indicator",
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| 23 |
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"Cycle",
|
| 24 |
-
]
|
| 25 |
-
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| 26 |
-
def main():
|
| 27 |
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df = pd.read_csv(CSV_PATH)
|
| 28 |
-
|
| 29 |
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# drop rows with missing values in required columns
|
| 30 |
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df = df.dropna(subset=FEATURES + [TARGET]).copy()
|
| 31 |
-
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| 32 |
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X = df[FEATURES]
|
| 33 |
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y = df[TARGET].astype(int)
|
| 34 |
-
|
| 35 |
-
# Train/test split (keep same logic as training if possible)
|
| 36 |
-
X_train, X_test, y_train, y_test = train_test_split(
|
| 37 |
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X, y, test_size=0.20, random_state=42, stratify=y
|
| 38 |
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)
|
| 39 |
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| 40 |
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bundle = joblib.load(MODEL_PATH)
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| 41 |
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model = bundle.get("model") if isinstance(bundle, dict) and "model" in bundle else bundle
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| 42 |
-
calibrator = bundle.get("calibrator") if isinstance(bundle, dict) and "calibrator" in bundle else None
|
| 43 |
-
|
| 44 |
-
# Get probabilities
|
| 45 |
-
p_test_raw = model.predict_proba(X_test)[:, 1]
|
| 46 |
-
if calibrator is not None:
|
| 47 |
-
p_test = calibrator.predict(p_test_raw.reshape(-1, 1))
|
| 48 |
-
else:
|
| 49 |
-
p_test = p_test_raw
|
| 50 |
-
|
| 51 |
-
# AUC (threshold-free)
|
| 52 |
-
auc = roc_auc_score(y_test, p_test)
|
| 53 |
-
print(f"TEST AUC: {auc:.4f}")
|
| 54 |
-
|
| 55 |
-
# Sweep thresholds
|
| 56 |
-
thresholds = np.round(np.arange(0.05, 0.90, 0.01), 2)
|
| 57 |
-
|
| 58 |
-
best_f2 = (-1, None)
|
| 59 |
-
th_recall_085 = None
|
| 60 |
-
|
| 61 |
-
for th in thresholds:
|
| 62 |
-
pred = (p_test >= th).astype(int)
|
| 63 |
-
rec = recall_score(y_test, pred)
|
| 64 |
-
f2 = fbeta_score(y_test, pred, beta=2)
|
| 65 |
-
|
| 66 |
-
if f2 > best_f2[0]:
|
| 67 |
-
best_f2 = (f2, th)
|
| 68 |
-
|
| 69 |
-
if th_recall_085 is None and rec >= 0.85:
|
| 70 |
-
th_recall_085 = th
|
| 71 |
-
|
| 72 |
-
print(f"Best threshold by F2: {best_f2[1]} (F2={best_f2[0]:.4f})")
|
| 73 |
-
if th_recall_085 is not None:
|
| 74 |
-
print(f"Threshold achieving recall ≥ 0.85 : {th_recall_085}")
|
| 75 |
-
else:
|
| 76 |
-
print("No threshold achieved recall ≥ 0.85 in tested range.")
|
| 77 |
-
|
| 78 |
-
if __name__ == "__main__":
|
| 79 |
-
main()
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|
nhanes_sleep_extended_v2.csv
DELETED
|
The diff for this file is too large to render.
See raw diff
|
|
|
requirements.txt
CHANGED
|
@@ -1,7 +1,6 @@
|
|
| 1 |
-
|
| 2 |
-
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
protobuf<4
|
|
|
|
| 1 |
+
gradio
|
| 2 |
+
pandas
|
| 3 |
+
numpy
|
| 4 |
+
scikit-learn
|
| 5 |
+
joblib
|
| 6 |
+
xgboost
|
|
|