Update rag/rag_generator.py

Update requirements.txt

Update requirements.txt

Update rag/rag_generator.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update app.py

Update rag/rag_retriever.py

Update rag/rag_generator.py

train: update extended schema, aliases, signals from gold tests

Update training/rag_index_builder.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update rag/rag_generator.py

Update app.py

train: update extended schema, aliases, signals from gold tests

Update data/rag/knowledge_base/Streptococcus/pneumoniae.json

Update data/rag/knowledge_base/Streptococcus/agalactiae.json

Update data/rag/knowledge_base/Streptococcus/mutans.json

Update data/rag/knowledge_base/Streptococcus/pyogenes.json

Update data/rag/knowledge_base/Streptococcus/genus.json

Update data/rag/knowledge_base/Streptomyces/somaliensis.json

Update data/rag/knowledge_base/Streptomyces/coelicolor.json

Update data/rag/knowledge_base/Streptomyces/griseus.json

Update data/rag/knowledge_base/Streptomyces/genus.json

Update data/rag/knowledge_base/Stenotrophomonas/maltophilia.json

Update data/rag/knowledge_base/Stenotrophomonas/acidaminiphila.json

Update data/rag/knowledge_base/Stenotrophomonas/genus.json

Update data/rag/knowledge_base/Stenotrophomonas/rhizophila.json

Update data/rag/knowledge_base/Staphylococcus/saprophyticus.json

Update data/rag/knowledge_base/Staphylococcus/lugdunensis.json

Update data/rag/knowledge_base/Staphylococcus/epidermidis.json

Update data/rag/knowledge_base/Staphylococcus/genus.json

Update data/rag/knowledge_base/Staphylococcus/aureus.json

Update data/rag/knowledge_base/Staphylococcus/aureus.json

Update data/rag/knowledge_base/Sporolactobacillus/laevolacticus.json

Update data/rag/knowledge_base/Sporolactobacillus/inulinus.json

Update data/rag/knowledge_base/Sporolactobacillus/genus.json

Update data/rag/knowledge_base/Spiroplasma/melliferum.json

Update data/rag/knowledge_base/Spiroplasma/citri.json

Update data/rag/knowledge_base/Spiroplasma/genus.json

Update data/rag/knowledge_base/Spirillum/winogradskyi.json

Update data/rag/knowledge_base/Spirillum/serpens.json

Update data/rag/knowledge_base/Spirillum/volutans.json

Update data/rag/knowledge_base/Spirillum/genus.json

Update data/rag/knowledge_base/Sphingomonas/wittichii.json

Update data/rag/knowledge_base/Sphingomonas/paucimobilis.json